Csor.00g072400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g072400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 3275276 .. 3275704 (-)
RNA-Seq ExpressionCsor.00g072400
SyntenyCsor.00g072400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATATTAGAGTTCATCGCCCTGTTCTTAGATTTCATCTTCAAAGATATCAAGGTGATGATAATGGATATCAAAGGTGTAGAAAGTGCAAAGCTTTGTAACCAAAACAAATGGGCAGAAGCAGATGCAACGTTTCTGCAAAGACTAAGCTTAAACAAGAACATGACAGAGATATCATCTTATTCTTTGCATTGTTCATCCCTTTTAGGGTTTGAAACAAATAGGAATAATGAGATCTTTAAGTATTCGAGGCAAAGGTTCTTGAGAAGCTACACGTTTAGCGTGGAGGAGAAAAAAACAAAGCGATTTGGGAAGGCAAGGAAGTGGTTTAACTTGAAATCAAGACCAAAATCAACAAGTTCCAATAATGTTGGAAAGAGTTCATACAATGGGATTTTCAAGTTCATGTTGTGCTGCACGAGTTGA

mRNA sequence

ATGCAGATATTAGAGTTCATCGCCCTGTTCTTAGATTTCATCTTCAAAGATATCAAGGTGATGATAATGGATATCAAAGGTGTAGAAAGTGCAAAGCTTTGTAACCAAAACAAATGGGCAGAAGCAGATGCAACGTTTCTGCAAAGACTAAGCTTAAACAAGAACATGACAGAGATATCATCTTATTCTTTGCATTGTTCATCCCTTTTAGGGTTTGAAACAAATAGGAATAATGAGATCTTTAAGTATTCGAGGCAAAGGTTCTTGAGAAGCTACACGTTTAGCGTGGAGGAGAAAAAAACAAAGCGATTTGGGAAGGCAAGGAAGTGGTTTAACTTGAAATCAAGACCAAAATCAACAAGTTCCAATAATGTTGGAAAGAGTTCATACAATGGGATTTTCAAGTTCATGTTGTGCTGCACGAGTTGA

Coding sequence (CDS)

ATGCAGATATTAGAGTTCATCGCCCTGTTCTTAGATTTCATCTTCAAAGATATCAAGGTGATGATAATGGATATCAAAGGTGTAGAAAGTGCAAAGCTTTGTAACCAAAACAAATGGGCAGAAGCAGATGCAACGTTTCTGCAAAGACTAAGCTTAAACAAGAACATGACAGAGATATCATCTTATTCTTTGCATTGTTCATCCCTTTTAGGGTTTGAAACAAATAGGAATAATGAGATCTTTAAGTATTCGAGGCAAAGGTTCTTGAGAAGCTACACGTTTAGCGTGGAGGAGAAAAAAACAAAGCGATTTGGGAAGGCAAGGAAGTGGTTTAACTTGAAATCAAGACCAAAATCAACAAGTTCCAATAATGTTGGAAAGAGTTCATACAATGGGATTTTCAAGTTCATGTTGTGCTGCACGAGTTGA

Protein sequence

MQILEFIALFLDFIFKDIKVMIMDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKSTSSNNVGKSSYNGIFKFMLCCTS
Homology
BLAST of Csor.00g072400 vs. NCBI nr
Match: KAG6605255.1 (hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278 bits (710), Expect = 4.96e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MQILEFIALFLDFIFKDIKVMIMDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEIS 60
           MQILEFIALFLDFIFKDIKVMIMDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEIS
Sbjct: 1   MQILEFIALFLDFIFKDIKVMIMDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEIS 60

Query: 61  SYSLHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKST 120
           SYSLHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKST
Sbjct: 61  SYSLHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKST 120

Query: 121 SSNNVGKSSYNGIFKFMLCCTS 142
           SSNNVGKSSYNGIFKFMLCCTS
Sbjct: 121 SSNNVGKSSYNGIFKFMLCCTS 142

BLAST of Csor.00g072400 vs. NCBI nr
Match: XP_023006822.1 (uncharacterized protein LOC111499491 [Cucurbita maxima])

HSP 1 Score: 256 bits (653), Expect = 4.20e-82
Identity = 132/140 (94.29%), Postives = 134/140 (95.71%), Query Frame = 0

Query: 3   ILEFIALFLDFIFKDIKVMIMDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSY 62
           ILEFIALFLDFIFKD+KVMIMDIKGV SAKLCNQNKWAEADATFLQRLSLNKNMTEISS 
Sbjct: 233 ILEFIALFLDFIFKDMKVMIMDIKGVGSAKLCNQNKWAEADATFLQRLSLNKNMTEISSS 292

Query: 63  SLHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKSTSS 122
           S HCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSR KSTSS
Sbjct: 293 SSHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRTKSTSS 352

Query: 123 NNVGKSSYNGIFKFMLCCTS 142
           NNVGKSSYNGI  FMLCCT+
Sbjct: 353 NNVGKSSYNGILNFMLCCTN 372

BLAST of Csor.00g072400 vs. NCBI nr
Match: KGN62030.1 (hypothetical protein Csa_006081 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 4.78e-12
Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 36  QNKWAEADATFLQRLSLNKNMTEISSYSL------HCSSLLGFETNRNNEIFKYSRQRFL 95
           Q KWAEADA FL++LSLNKN  E            + SS+ GFE  R+N+I  YSRQR+L
Sbjct: 17  QQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQRYL 76

Query: 96  RSYTFSVEEK--------KTKRFGKARKWFNLKS 115
           RSY F+ + K        KT  F K   +F LKS
Sbjct: 77  RSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110

BLAST of Csor.00g072400 vs. NCBI nr
Match: KAA8531787.1 (hypothetical protein F0562_006496 [Nyssa sinensis])

HSP 1 Score: 48.9 bits (115), Expect = 4.08e-04
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 0

Query: 23  MDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFETNRNNEIFK 82
           +D +      L    +WA+AD  FL+ +S NK   E SS +    S +       +E + 
Sbjct: 13  LDAETPVKVNLVKLYQWAQADKEFLRMVSENKLERESSSSNSPIRSPVRRLPTNRHESYA 72

Query: 83  YSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKSTSSNN 124
            SRQR+LRSYTFS +E  ++R    +KW   K + K    NN
Sbjct: 73  CSRQRYLRSYTFSRKETVSQR---TKKWLKEKQKLKKLYYNN 111

BLAST of Csor.00g072400 vs. NCBI nr
Match: PNT26861.1 (hypothetical protein POPTR_007G032600 [Populus trichocarpa])

HSP 1 Score: 49.3 bits (116), Expect = 4.72e-04
Identity = 44/139 (31.65%), Postives = 63/139 (45.32%), Query Frame = 0

Query: 27  GVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFE-------TNRNNE 86
           G  S  L  + +W +  A F+Q LS  K     ++   H +S L F        T    E
Sbjct: 13  GNSSRILSAKPEWDKLQARFIQSLSFEKERERSTAIPTHIASSLSFHPFGYHKVTEVGGE 72

Query: 87  IFKYS------------RQRFLRSYTFSVEEK-------KTKRFGKARKWFNLKSRPKST 139
           IF +             RQR+LRSY F+ EE+       K KRF K +K    K++ KS 
Sbjct: 73  IFSFGSDIAGSPDNYVCRQRYLRSYVFTREEESNKSVVQKVKRFFKDKKKGEGKAKGKSG 132

BLAST of Csor.00g072400 vs. ExPASy TrEMBL
Match: A0A6J1KWW2 (uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 2.04e-82
Identity = 132/140 (94.29%), Postives = 134/140 (95.71%), Query Frame = 0

Query: 3   ILEFIALFLDFIFKDIKVMIMDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSY 62
           ILEFIALFLDFIFKD+KVMIMDIKGV SAKLCNQNKWAEADATFLQRLSLNKNMTEISS 
Sbjct: 233 ILEFIALFLDFIFKDMKVMIMDIKGVGSAKLCNQNKWAEADATFLQRLSLNKNMTEISSS 292

Query: 63  SLHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKSTSS 122
           S HCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSR KSTSS
Sbjct: 293 SSHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRTKSTSS 352

Query: 123 NNVGKSSYNGIFKFMLCCTS 142
           NNVGKSSYNGI  FMLCCT+
Sbjct: 353 NNVGKSSYNGILNFMLCCTN 372

BLAST of Csor.00g072400 vs. ExPASy TrEMBL
Match: A0A0A0LJK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.31e-12
Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 36  QNKWAEADATFLQRLSLNKNMTEISSYSL------HCSSLLGFETNRNNEIFKYSRQRFL 95
           Q KWAEADA FL++LSLNKN  E            + SS+ GFE  R+N+I  YSRQR+L
Sbjct: 17  QQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQRYL 76

Query: 96  RSYTFSVEEK--------KTKRFGKARKWFNLKS 115
           RSY F+ + K        KT  F K   +F LKS
Sbjct: 77  RSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110

BLAST of Csor.00g072400 vs. ExPASy TrEMBL
Match: A0A5B7C6D7 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_045856 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.35e-08
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 38  KWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFETNRNNEIFKY--SRQRFLRSYTFS 97
           +WAEAD  FL+ +S+NK   +ISS S   ++     TN ++    Y  SRQR+LRSYTFS
Sbjct: 30  EWAEADKEFLRMVSMNKERDQISSSSATATARGPTTTNCHDREISYACSRQRYLRSYTFS 89

Query: 98  VEEKKTKRFGKARKWFNLKSRPKSTSSNNVGKSSYNGIFKFMLCCTS 142
            ++  ++R   ++KW  LK +  ++  +    S  + +FKF+  C +
Sbjct: 90  RKQTVSQR---SKKW--LKDKHNNSKDSGGSCSFLDAVFKFLFSCVA 131

BLAST of Csor.00g072400 vs. ExPASy TrEMBL
Match: A0A2N9IEQ4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50526 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.06e-05
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 0

Query: 38  KWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFETNRNNEIFKY-----SRQRFLRSY 97
           +W E+DA FL+++S+ K   E          LL    + ++E + Y     SRQRFLRSY
Sbjct: 26  QWPESDAEFLRKVSMEKKREE---------GLLSSLIDNDSEKYSYHESYVSRQRFLRSY 85

Query: 98  TFSVEEKKTKRFGKARKWFNLKSRPKSTSSNNVGKSSYNGIFKFMLCCTS 142
           TFS  +KK     K +KW  LK +  ++ S+    S  + +FKF+  C +
Sbjct: 86  TFS--KKKETAAEKTKKW--LKEKQNNSGSSGSCNSFLHYVFKFLFLCVA 122

BLAST of Csor.00g072400 vs. ExPASy TrEMBL
Match: A0A5J5AQY7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_006496 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.97e-04
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 0

Query: 23  MDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFETNRNNEIFK 82
           +D +      L    +WA+AD  FL+ +S NK   E SS +    S +       +E + 
Sbjct: 13  LDAETPVKVNLVKLYQWAQADKEFLRMVSENKLERESSSSNSPIRSPVRRLPTNRHESYA 72

Query: 83  YSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKSTSSNN 124
            SRQR+LRSYTFS +E  ++R    +KW   K + K    NN
Sbjct: 73  CSRQRYLRSYTFSRKETVSQR---TKKWLKEKQKLKKLYYNN 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605255.14.96e-94100.00hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023006822.14.20e-8294.29uncharacterized protein LOC111499491 [Cucurbita maxima][more]
KGN62030.14.78e-1246.81hypothetical protein Csa_006081 [Cucumis sativus][more]
KAA8531787.14.08e-0434.31hypothetical protein F0562_006496 [Nyssa sinensis][more]
PNT26861.14.72e-0431.65hypothetical protein POPTR_007G032600 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
A0A6J1KWW22.04e-8294.29uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491... [more]
A0A0A0LJK12.31e-1246.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1[more]
A0A5B7C6D75.35e-0835.51Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_045856... [more]
A0A2N9IEQ41.06e-0534.55Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50526 PE=4 SV=1[more]
A0A5J5AQY71.97e-0434.31Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_006496 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g072400.m01Csor.00g072400.m01mRNA