Csor.00g072110 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g072110
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr02: 3058221 .. 3058475 (-)
RNA-Seq Expression	Csor.00g072110
Synteny	Csor.00g072110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTCCACGTCACAGCTTCCGGAGAGGCCGAGGAAACAGAGCATCCGCCATTGGAGTCGAGGGAGTTTCTTCCAGGATGTCGTAGGGAAGGCCCGCGGACGGCGATCGAGAGATCAGACGGCTGGAATAGCCCAGGCGGAGTTGGAGGAGTTGATCGGCGCCGTGGTTGCGGCGGAGAGAGTAGCGGAGGGTGGAGGCATTTGCGAAAGGCATGTTGGATTGAAACAGAGATTGATGGAGTTTTGTTTTGA

mRNA sequence

ATGGGGTTCCACGTCACAGCTTCCGGAGAGGCCGAGGAAACAGAGCATCCGCCATTGGAGTCGAGGGAGTTTCTTCCAGGATGTCGTAGGGAAGGCCCGCGGACGGCGATCGAGAGATCAGACGGCTGGAATAGCCCAGGCGGAGTTGGAGGAGTTGATCGGCGCCGTGGTTGCGGCGGAGAGAGTAGCGGAGGGTGGAGGCATTTGCGAAAGGCATGTTGGATTGAAACAGAGATTGATGGAGTTTTGTTTTGA

Coding sequence (CDS)

ATGGGGTTCCACGTCACAGCTTCCGGAGAGGCCGAGGAAACAGAGCATCCGCCATTGGAGTCGAGGGAGTTTCTTCCAGGATGTCGTAGGGAAGGCCCGCGGACGGCGATCGAGAGATCAGACGGCTGGAATAGCCCAGGCGGAGTTGGAGGAGTTGATCGGCGCCGTGGTTGCGGCGGAGAGAGTAGCGGAGGGTGGAGGCATTTGCGAAAGGCATGTTGGATTGAAACAGAGATTGATGGAGTTTTGTTTTGA

Protein sequence

MGFHVTASGEAEETEHPPLESREFLPGCRREGPRTAIERSDGWNSPGGVGGVDRRRGCGGESSGGWRHLRKACWIETEIDGVLF

Homology

[Close]

BLAST of Csor.00g072110 vs. NCBI nr
Match: KAG6605226.1 (hypothetical protein SDJN03_02543, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (467), Expect = 8.10e-59
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MGFHVTASGEAEETEHPPLESREFLPGCRREGPRTAIERSDGWNSPGGVGGVDRRRGCGG 60
          MGFHVTASGEAEETEHPPLESREFLPGCRREGPRTAIERSDGWNSPGGVGGVDRRRGCGG
Sbjct: 1  MGFHVTASGEAEETEHPPLESREFLPGCRREGPRTAIERSDGWNSPGGVGGVDRRRGCGG 60

Query: 61 ESSGGWRHLRKACWIETEIDGVLF 84
          ESSGGWRHLRKACWIETEIDGVLF
Sbjct: 61 ESSGGWRHLRKACWIETEIDGVLF 84

The following BLAST results are available for this feature:

BLAST of Csor.00g072110 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g072110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605226.1	8.10e-59	100.00	hypothetical protein SDJN03_02543, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g072110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g072110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g072110.m01	Csor.00g072110.m01	mRNA