Csor.00g072080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g072080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	Csor_Chr02: 3047399 .. 3048070 (+)
RNA-Seq Expression	Csor.00g072080
Synteny	Csor.00g072080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATAGCACCGGCACCCTGGCTTCCCACGAGCAACCCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATGGGCGATGCTCTGTTTCCTTTTATTCTGCGCGACCTGCTCGACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATCGCCGTCTGCAATATCATCTTTGCGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCGACGTGGATCTCGACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTGCGATGAACAGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGGAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGGTTCAGATGAGCAATTCGTGTCCTCTCTGCAGAACCAAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATAGCACCGGCACCCTGGCTTCCCACGAGCAACCCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATGGGCGATGCTCTGTTTCCTTTTATTCTGCGCGACCTGCTCGACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATCGCCGTCTGCAATATCATCTTTGCGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCGACGTGGATCTCGACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTGCGATGAACAGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGGAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGGTTCAGATGAGCAATTCGTGTCCTCTCTGCAGAACCAAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATAGCACCGGCACCCTGGCTTCCCACGAGCAACCCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATGGGCGATGCTCTGTTTCCTTTTATTCTGCGCGACCTGCTCGACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATCGCCGTCTGCAATATCATCTTTGCGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCGACGTGGATCTCGACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTGCGATGAACAGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGGAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGGTTCAGATGAGCAATTCGTGTCCTCTCTGCAGAACCAAATTAGAACAATAA

Protein sequence

MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDFHIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ

Homology

[Close]

BLAST of Csor.00g072080 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-10
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 142 EEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     NR P    E L R       +++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCR------CKKQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWVQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of Csor.00g072080 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-09
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 142 EEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           EE  PPA      ++I+ +   E DG      EG+C +C E  K EE V  +PC H +H 
Sbjct: 87  EEGRPPASK----ASIDAMPIVEIDGC-----EGECVICLEEWKSEETVKEMPCKHRFHG 146

Query: 202 CCILKWVQMSNSCPLCRTKL 222
            CI KW+    SCP+CR ++
Sbjct: 147 GCIEKWLGFHGSCPVCRYEM 157

[Close]

BLAST of Csor.00g072080 vs. ExPASy Swiss-Prot
Match: Q6ZSG1 (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-09
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 167 GLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLE 223
           G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +W+ MS  CP+CR  +E
Sbjct: 280 GKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIE 339

[Close]

BLAST of Csor.00g072080 vs. ExPASy Swiss-Prot
Match: E9QAU8 (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-09
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 163 EEFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCR 222
           ++  G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +W+ MS  CP+CR
Sbjct: 277 QDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336

[Close]

BLAST of Csor.00g072080 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 145 SPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCI 204
           +PPA      SAIE L R E         E +C+VC E  + E E   +PC H++H  CI
Sbjct: 172 NPPASK----SAIESLPRVEISDC-HIGSEANCAVCTEIFETETEAREMPCKHLFHDDCI 231

Query: 205 LKWVQMSNSCPLCRTKL 222
           + W+ + NSCP+CR +L
Sbjct: 232 VPWLSIRNSCPVCRFEL 243

[Close]

BLAST of Csor.00g072080 vs. NCBI nr
Match: KAG6605223.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449 bits (1156), Expect = 2.29e-159
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM
Sbjct: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF
Sbjct: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g072080 vs. NCBI nr
Match: XP_022947840.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 426 bits (1096), Expect = 3.11e-150
Identity = 212/223 (95.07%), Postives = 219/223 (98.21%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM
Sbjct: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPFILRDLL PPFLSKSHVLRF+SSFSIPIAVCNIIF EISSFALHLAAG+VDL+F
Sbjct: 61  GDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDVDAIEMIWVDLDPFLIEEYSPPAMN APASAIERLQR+EFDGLREEEE G+CSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGLREEEE-GECSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHKCCIL+W+QMSNSCPLCRTKLEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTKLEQ 222

[Close]

BLAST of Csor.00g072080 vs. NCBI nr
Match: XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426 bits (1096), Expect = 3.23e-150
Identity = 209/223 (93.72%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQCSFRTN+TG LASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM
Sbjct: 1   MSLTFGDSLSFQCSFRTNTTGNLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPFILRDLLDPPFLSKSHVLRF+SSF+IPIAVCNIIFAEISSFALHLAAG+VDL+F
Sbjct: 61  GDALFPFILRDLLDPPFLSKSHVLRFLSSFTIPIAVCNIIFAEISSFALHLAAGNVDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDVDAIEMIWVDLDPFLIEEYSP AMN APASAIERLQR++FDGLREEE+EGDCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPAAMNGAPASAIERLQRQKFDGLREEEKEGDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHKCCILKW++MSNSCPLCRT+LEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 223

[Close]

BLAST of Csor.00g072080 vs. NCBI nr
Match: KAG6605225.1 (E3 ubiquitin-protein ligase RDUF2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405 bits (1040), Expect = 1.07e-141
Identity = 201/223 (90.13%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQCSFRTN+T T+ASHEQPMQ VELRLGHSSHLISRSSRQILQQTPSTPM
Sbjct: 1   MSLTFGDSLSFQCSFRTNTTATVASHEQPMQLVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPF LRDLL PPFLSKSHVLRFMSSFSIPIA CNIIFAEISSFALHLAAG+V  + 
Sbjct: 61  GDALFPFFLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFAEISSFALHLAAGNVHRNL 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDV+ IEMIWVDLD FL+EEYSPPAMN APASAIERLQR+EFDGLREEEE GDCSVC
Sbjct: 121 HIVVDVNVIEMIWVDLDTFLVEEYSPPAMNGAPASAIERLQRQEFDGLREEEE-GDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHKCCILKW+QM+NSCPLCRT+LEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ 222

[Close]

BLAST of Csor.00g072080 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 392 bits (1007), Expect = 1.19e-136
Identity = 191/223 (85.65%), Postives = 208/223 (93.27%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQ S RTN+TGTLASHE PMQFVELRLGHSSHLISRSSRQILQQ+PSTP+
Sbjct: 1   MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           G++LFPFILRDL  PPFL   HVL F+SSFSIP+A C+II+ EISSFAL L A +VDL+F
Sbjct: 61  GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDVDAIEMIWVDLDPFL+EEYSPPAMN APASAIERLQR++FDGLREEEEEGDCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEAL+GEEEVSRIPCGHVYHKCCILKW+Q+SNSCPLCRTKLEQ
Sbjct: 181 CEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g072080 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 426 bits (1096), Expect = 1.51e-150
Identity = 212/223 (95.07%), Postives = 219/223 (98.21%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM
Sbjct: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPFILRDLL PPFLSKSHVLRF+SSFSIPIAVCNIIF EISSFALHLAAG+VDL+F
Sbjct: 61  GDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDVDAIEMIWVDLDPFLIEEYSPPAMN APASAIERLQR+EFDGLREEEE G+CSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGLREEEE-GECSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHKCCIL+W+QMSNSCPLCRTKLEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTKLEQ 222

[Close]

BLAST of Csor.00g072080 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 392 bits (1007), Expect = 5.76e-137
Identity = 191/223 (85.65%), Postives = 208/223 (93.27%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTFGDSLSFQ S RTN+TGTLASHE PMQFVELRLGHSSHLISRSSRQILQQ+PSTP+
Sbjct: 1   MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           G++LFPFILRDL  PPFL   HVL F+SSFSIP+A C+II+ EISSFAL L A +VDL+F
Sbjct: 61  GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVVDVDAIEMIWVDLDPFL+EEYSPPAMN APASAIERLQR++FDGLREEEEEGDCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEAL+GEEEVSRIPCGHVYHKCCILKW+Q+SNSCPLCRTKLEQ
Sbjct: 181 CEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g072080 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 377 bits (968), Expect = 5.05e-131
Identity = 184/223 (82.51%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTF D LSFQCS ++   GT+AS +QPMQ +ELRLG+S+HLISRSSRQILQQTP+TPM
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPM 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPF+LRDL  PPFLS  +VL+F+SSFSIPIA C+II+ EISSFAL LAAG+VDL+F
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVV+VD IEMIWVDLDPFL+EEYSP  MN APASAIERLQR+EFDGLREEEEEGDCSVC
Sbjct: 121 HIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHKCCILKW+QMSNSCPLCRTKLEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g072080 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 368 bits (944), Expect = 2.29e-127
Identity = 180/223 (80.72%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSLTF D LSFQCS ++   GT+AS +QP+Q +ELRLGHS+HLISRSSRQILQQTPSTP+
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPI 60

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALFPF+LRDL  PPFLS  +VL+F+SSFSIPIA C+II+ EISSFAL LAAG++DL+F
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNF 120

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           HIVV+VD  EMIWVDLDPFL+EEYSP  MN APASAIERLQR++FDGLREEEEEGDCSVC
Sbjct: 121 HIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEEVSRIPCGHVYHK CILKW+QMSNSCPLCRTKLEQ
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Csor.00g072080 vs. ExPASy TrEMBL
Match: A0A6J1G826 (E3 ubiquitin-protein ligase RNF38-like OS=Cucurbita moschata OX=3662 GN=LOC111451599 PE=4 SV=1)

HSP 1 Score: 332 bits (852), Expect = 1.20e-112
Identity = 163/223 (73.09%), Postives = 186/223 (83.41%), Query Frame = 0


Query: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
           MSL+  D LS+QCS R     +L S EQPMQ +ELR+GHS +LISRSS QILQ++PSTPM
Sbjct: 48  MSLSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 107

Query: 61  GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
           GDALF FILRD   PPFL  S VLRF+SSF IPI  CN+I+ +ISSFA H+ A DV L+F
Sbjct: 108 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNF 167

Query: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVC 180
           H+VVDV+  EM WVDLDPFL+EE SPP MN APASAIERLQR+EF GLREEEEEGDCSVC
Sbjct: 168 HMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVC 227

Query: 181 CEALKGEEEVSRIPCGHVYHKCCILKWVQMSNSCPLCRTKLEQ 223
           CEALKGEEE SRIPCGHVYHKCCILKW+Q+SNSCPLCRT+L++
Sbjct: 228 CEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQE 270

[Close]

BLAST of Csor.00g072080 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-11
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 142 EEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     NR P    E L R       +++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCR------CKKQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWVQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of Csor.00g072080 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-11
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 142 EEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     NR P    E L R       +++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCR------CKKQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWVQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of Csor.00g072080 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 159 RLQREEFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWVQMSNSCP 218
           R++ EEF  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+W++  N+CP
Sbjct: 141 RMKAEEFKSLKMETE--PCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTKL 222
           LCRT++
Sbjct: 201 LCRTEI 204

[Close]

BLAST of Csor.00g072080 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 7.0e-10
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 142 EEYSPPAMNRAPASAIERLQREEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           EE  PPA      ++I+ +   E DG      EG+C +C E  K EE V  +PC H +H 
Sbjct: 87  EEGRPPASK----ASIDAMPIVEIDGC-----EGECVICLEEWKSEETVKEMPCKHRFHG 146

Query: 202 CCILKWVQMSNSCPLCRTKL 222
            CI KW+    SCP+CR ++
Sbjct: 147 GCIEKWLGFHGSCPVCRYEM 157

[Close]

BLAST of Csor.00g072080 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-10
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 159 RLQREEFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWVQMSNSCP 218
           R++ EE   L+ E E   CS+C E+L       +++R+ C HV+H  C+L+W++  N+CP
Sbjct: 6   RIKTEELKSLKMETE--PCSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCP 65

Query: 219 LCRTKL 222
           LCRT+L
Sbjct: 66  LCRTEL 69

The following BLAST results are available for this feature:

BLAST of Csor.00g072080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	6.8e-10	37.04	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9LQX2	9.8e-09	38.75	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
Q6ZSG1	9.8e-09	40.00	E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1	[more]
E9QAU8	9.8e-09	37.50	E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1	[more]
Q940T5	1.7e-08	40.26	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]

BLAST of Csor.00g072080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605223.1	2.29e-159	100.00	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022947840.1	3.11e-150	95.07	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]
XP_023533113.1	3.23e-150	93.72	RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605225.1	1.07e-141	90.13	E3 ubiquitin-protein ligase RDUF2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006824.1	1.19e-136	85.65	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]

BLAST of Csor.00g072080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G809	1.51e-150	95.07	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1L387	5.76e-137	85.65	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE...	[more]
A0A6J1G7Z5	5.05e-131	82.51	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KYV1	2.29e-127	80.72	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A6J1G826	1.20e-112	73.09	E3 ubiquitin-protein ligase RNF38-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Csor.00g072080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	4.8e-11	37.04	RING/U-box superfamily protein	[more]
AT2G04240.2	4.8e-11	37.04	RING/U-box superfamily protein	[more]
AT4G05350.1	2.4e-10	42.42	RING/U-box superfamily protein	[more]
AT1G26800.1	7.0e-10	38.75	RING/U-box superfamily protein	[more]
AT4G12190.1	9.1e-10	40.91	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 e-value: 6.2E-6 score: 35.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 e-value: 1.7E-11 score: 44.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 177..218 score: 12.902362
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 142..223 e-value: 6.0E-19 score: 69.5
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 79..222
None	No IPR available	PANTHER	PTHR45931:SF9	E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE	coord: 79..222
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 171..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g072080.m01	Csor.00g072080.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity