Csor.00g071150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g071150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	polyadenylate-binding protein RBP47-like
Location	Csor_Chr02: 2345185 .. 2345586 (-)
RNA-Seq Expression	Csor.00g071150
Synteny	Csor.00g071150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAGCCTTCCAACGCTGCTGATCTCAATCCTCAAGCCCCTCACCCTCACCATCAATGGTATCAACAACAACGACAGTATCAGCAGCAATGGATGGCGGTGCAGTACCCTGCCGCCGCCATGGCCATGATGCAACAACAGCAGATGATGATGTATCCTCCTCAGCATTACGTGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCCACAGCAGCAGCCACCGCCGTCGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACCTCAGTCGCAGCGACCTCGCAGACAGGGGTCAACGGACGACGTTAAGACGCTTTGGATTGGTGACCTTCAGGCCTGGATGGACGAGACCTATCTCCATAACTGTTTCGCTCACACCGGCGAGGTCTAA

mRNA sequence

ATGGCCCAGCCTTCCAACGCTGCTGATCTCAATCCTCAAGCCCCTCACCCTCACCATCAATGGTATCAACAACAACGACAGTATCAGCAGCAATGGATGGCGGTGCAGTACCCTGCCGCCGCCATGGCCATGATGCAACAACAGCAGATGATGATGTATCCTCCTCAGCATTACGTGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCCACAGCAGCAGCCACCGCCGTCGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACCTCAGTCGCAGCGACCTCGCAGACAGGGGTCAACGGACGACGTTAAGACGCTTTGGATTGGTGACCTTCAGGCCTGGATGGACGAGACCTATCTCCATAACTGTTTCGCTCACACCGGCGAGGTCTAA

Coding sequence (CDS)

ATGGCCCAGCCTTCCAACGCTGCTGATCTCAATCCTCAAGCCCCTCACCCTCACCATCAATGGTATCAACAACAACGACAGTATCAGCAGCAATGGATGGCGGTGCAGTACCCTGCCGCCGCCATGGCCATGATGCAACAACAGCAGATGATGATGTATCCTCCTCAGCATTACGTGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCCACAGCAGCAGCCACCGCCGTCGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACCTCAGTCGCAGCGACCTCGCAGACAGGGGTCAACGGACGACGTTAAGACGCTTTGGATTGGTGACCTTCAGGCCTGGATGGACGAGACCTATCTCCATAACTGTTTCGCTCACACCGGCGAGGTCTAA

Protein sequence

MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVAYSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETYLHNCFAHTGEV

Homology

[Close]

BLAST of Csor.00g071150 vs. ExPASy Swiss-Prot
Match: F4I3B3 (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-21
Identity = 78/136 (57.35%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 4   PSNAADLNP----QAPHPHHQWYQQQRQYQQQWMAV--QYPAAAMAMMQQQQMMMYPPQH 63
           P++A    P    Q+  P  Q  QQQ Q QQQWMA   QYPAAAMAMMQQQQMMMYP   
Sbjct: 16  PTSAGTTPPPPLQQSTPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQ 75

Query: 64  YVAYSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAW 123
           Y  Y+   Y  QQ PQ Q    QQQQQQ  Q Q    Q+PR     DDVKTLW+GDL  W
Sbjct: 76  YAPYNQAAY--QQHPQFQYAAYQQQQQQHHQSQ----QQPRGGSGGDDVKTLWVGDLLHW 135

Query: 124 MDETYLHNCFAHTGEV 134
           MDETYLH CF+HT EV
Sbjct: 136 MDETYLHTCFSHTNEV 145

[Close]

BLAST of Csor.00g071150 vs. ExPASy Swiss-Prot
Match: Q0WW84 (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-21
Identity = 76/131 (58.02%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   SNAADLNPQAPHPHHQWYQQQRQYQQQWM-AVQY-PAAAMAMMQQQQMMMYPPQHYVAYS 64
           S A   N Q P P  QW QQQ+Q QQQWM A+QY PAAAM MMQQQQM+MYP Q YV Y+
Sbjct: 14  SGATPPNQQTPPPPQQW-QQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQ-YVPYN 73

Query: 65  HHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETY 124
             PYQQ           Q  Q    QQ Q Q  +   +GS DDVKTLW+GDL  WMDETY
Sbjct: 74  QGPYQQHH--------PQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETY 133

Query: 125 LHNCFAHTGEV 134
           LH+CF+HTGEV
Sbjct: 134 LHSCFSHTGEV 134

[Close]

BLAST of Csor.00g071150 vs. ExPASy Swiss-Prot
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.3e-15
Identity = 65/134 (48.51%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 6   NAADLNPQAPHPHHQWYQQQ------RQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYV 65
           N  D+N Q      Q  QQQ      +QYQQQWMA+QYPAAAMAM   QQ MMY      
Sbjct: 2   NGGDMNQQQQQQQQQHQQQQQQWLAMQQYQQQWMAMQYPAAAMAM---QQQMMY------ 61

Query: 66  AYSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMD 125
                        QQ  P  QQ QQQQ+ QQ P     + Q S++D KT+WIGDLQ WMD
Sbjct: 62  ------------GQQYMPYYQQHQQQQKMQQSP----TQIQSSSEDNKTIWIGDLQQWMD 110

Query: 126 ETYLHNCFAHTGEV 134
           E+YLH+CF+  GEV
Sbjct: 122 ESYLHSCFSQAGEV 110

[Close]

BLAST of Csor.00g071150 vs. ExPASy Swiss-Prot
Match: Q9LEB4 (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP45 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 55/130 (42.31%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 4   PSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVAYSH 63
           P +     P AP         Q QYQQQ         A    QQQQ MM PPQ       
Sbjct: 3   PQSGVAQPPMAP-----MSMDQHQYQQQ---------APPPTQQQQWMM-PPQ------- 62

Query: 64  HPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETYL 123
            P Q Q QPQ QP  +QQ  QQQ       +  P   G+ ++V++LWIGDLQ WMDE YL
Sbjct: 63  QPQQPQFQPQSQPAWAQQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYL 110

Query: 124 HNCFAHTGEV 134
             CF HTGE+
Sbjct: 123 STCFYHTGEL 110

[Close]

BLAST of Csor.00g071150 vs. NCBI nr
Match: KAG6605130.1 (Polyadenylate-binding protein RBP47B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 2.00e-82
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE
Sbjct: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 133

[Close]

BLAST of Csor.00g071150 vs. NCBI nr
Match: KAG7035127.1 (Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248 bits (632), Expect = 1.04e-78
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE
Sbjct: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 133

[Close]

BLAST of Csor.00g071150 vs. NCBI nr
Match: XP_023007482.1 (polyadenylate-binding protein RBP47-like [Cucurbita maxima])

HSP 1 Score: 236 bits (603), Expect = 9.18e-74
Identity = 128/133 (96.24%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSN ADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQ PQQQPPPSQQQQQQQQ   QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE
Sbjct: 61  YSHHPYQQQQHPQQQPPPSQQQQQQQQ---QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 130

[Close]

BLAST of Csor.00g071150 vs. NCBI nr
Match: XP_022947439.1 (polyadenylate-binding protein RBP47-like [Cucurbita moschata])

HSP 1 Score: 235 bits (599), Expect = 3.30e-73
Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSNAADLNPQ PHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNAADLNPQTPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQPQQQPPPSQQQQQ      QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE
Sbjct: 61  YSHHPYQQQQQPQQQPPPSQQQQQ------QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 127

[Close]

BLAST of Csor.00g071150 vs. NCBI nr
Match: XP_023533349.1 (polyadenylate-binding protein RBP47 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234 bits (596), Expect = 9.06e-73
Identity = 125/133 (93.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQPQQQPPPSQQQQ       QPQSQRPRRQGSTDDVKTLWIGDLQ WMDE
Sbjct: 61  YSHHPYQQQQQPQQQPPPSQQQQ-------QPQSQRPRRQGSTDDVKTLWIGDLQGWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 126

[Close]

BLAST of Csor.00g071150 vs. ExPASy TrEMBL
Match: A0A6J1KYU5 (polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC111499959 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 4.44e-74
Identity = 128/133 (96.24%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSN ADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQ PQQQPPPSQQQQQQQQ   QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE
Sbjct: 61  YSHHPYQQQQHPQQQPPPSQQQQQQQQ---QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 130

[Close]

BLAST of Csor.00g071150 vs. ExPASy TrEMBL
Match: A0A6J1G6T8 (polyadenylate-binding protein RBP47-like OS=Cucurbita moschata OX=3662 GN=LOC111451298 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 1.60e-73
Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSNAADLNPQ PHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA
Sbjct: 1   MAQPSNAADLNPQTPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQPQQQPPPSQQQQQ      QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE
Sbjct: 61  YSHHPYQQQQQPQQQPPPSQQQQQ------QPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAHTGEV
Sbjct: 121 TYLHNCFAHTGEV 127

[Close]

BLAST of Csor.00g071150 vs. ExPASy TrEMBL
Match: A0A5D3CNT4 (Polyadenylate-binding protein RBP47 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00410 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.16e-62
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSN ADLNPQAPHPHHQW+QQQ+QYQQQWMA+QYPAAAMAMM QQQMMMYPPQHY+A
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQ QQQP         QQQQQ  QSQRPRRQGSTD+VKTLWIGDLQ WMDE
Sbjct: 61  YSHHPYQQQQQQQQQPSS-------QQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYL+NCFAHTGEV
Sbjct: 121 TYLNNCFAHTGEV 126

[Close]

BLAST of Csor.00g071150 vs. ExPASy TrEMBL
Match: A0A1S3C9N4 (polyadenylate-binding protein RBP47 OS=Cucumis melo OX=3656 GN=LOC103498402 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 4.53e-62
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSN ADLNPQAPHPHHQW+QQQ+QYQQQWMA+QYPAAAMAMM QQQMMMYPPQHY+A
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMA 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSHHPYQQQQQ QQQP         QQQQQ  QSQRPRRQGSTD+VKTLWIGDLQ WMDE
Sbjct: 61  YSHHPYQQQQQQQQQPSS-------QQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYL+NCFAHTGEV
Sbjct: 121 TYLNNCFAHTGEV 126

[Close]

BLAST of Csor.00g071150 vs. ExPASy TrEMBL
Match: A0A6J1JGT7 (polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC111484248 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 1.44e-58
Identity = 108/133 (81.20%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MAQPSNAADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60
           MAQPSN ADLNPQAPHPH QW+QQQ+QYQQQWMA+QYPAAAMAMM QQQMMMYPPQHY+ 
Sbjct: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60

Query: 61  YSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDE 120
           YSH PYQQQ      PPP QQQQQQ     Q QSQRPRRQGSTD+VKTLWIGDLQ WMDE
Sbjct: 61  YSHLPYQQQ------PPPLQQQQQQ-----QAQSQRPRRQGSTDEVKTLWIGDLQPWMDE 120

Query: 121 TYLHNCFAHTGEV 133
           TYLHNCFAH GEV
Sbjct: 121 TYLHNCFAHIGEV 122

[Close]

BLAST of Csor.00g071150 vs. TAIR 10
Match: AT1G49600.1 (RNA-binding protein 47A )

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-22
Identity = 78/136 (57.35%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 4   PSNAADLNP----QAPHPHHQWYQQQRQYQQQWMAV--QYPAAAMAMMQQQQMMMYPPQH 63
           P++A    P    Q+  P  Q  QQQ Q QQQWMA   QYPAAAMAMMQQQQMMMYP   
Sbjct: 16  PTSAGTTPPPPLQQSTPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQ 75

Query: 64  YVAYSHHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAW 123
           Y  Y+   Y  QQ PQ Q    QQQQQQ  Q Q    Q+PR     DDVKTLW+GDL  W
Sbjct: 76  YAPYNQAAY--QQHPQFQYAAYQQQQQQHHQSQ----QQPRGGSGGDDVKTLWVGDLLHW 135

Query: 124 MDETYLHNCFAHTGEV 134
           MDETYLH CF+HT EV
Sbjct: 136 MDETYLHTCFSHTNEV 145

[Close]

BLAST of Csor.00g071150 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-22
Identity = 76/131 (58.02%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   SNAADLNPQAPHPHHQWYQQQRQYQQQWM-AVQY-PAAAMAMMQQQQMMMYPPQHYVAYS 64
           S A   N Q P P  QW QQQ+Q QQQWM A+QY PAAAM MMQQQQM+MYP Q YV Y+
Sbjct: 14  SGATPPNQQTPPPPQQW-QQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQ-YVPYN 73

Query: 65  HHPYQQQQQPQQQPPPSQQQQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETY 124
             PYQQ           Q  Q    QQ Q Q  +   +GS DDVKTLW+GDL  WMDETY
Sbjct: 74  QGPYQQHH--------PQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETY 133

Query: 125 LHNCFAHTGEV 134
           LH+CF+HTGEV
Sbjct: 134 LHSCFSHTGEV 134

The following BLAST results are available for this feature:

BLAST of Csor.00g071150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3B3	8.7e-21	57.35	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P...	[more]
Q0WW84	8.7e-21	58.02	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P...	[more]
Q9LEB3	9.3e-15	48.51	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q9LEB4	3.0e-05	42.31	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]

BLAST of Csor.00g071150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605130.1	2.00e-82	100.00	Polyadenylate-binding protein RBP47B, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7035127.1	1.04e-78	100.00	Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023007482.1	9.18e-74	96.24	polyadenylate-binding protein RBP47-like [Cucurbita maxima]	[more]
XP_022947439.1	3.30e-73	94.74	polyadenylate-binding protein RBP47-like [Cucurbita moschata]	[more]
XP_023533349.1	9.06e-73	93.98	polyadenylate-binding protein RBP47 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g071150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYU5	4.44e-74	96.24	polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1G6T8	1.60e-73	94.74	polyadenylate-binding protein RBP47-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3CNT4	1.16e-62	84.21	Polyadenylate-binding protein RBP47 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C9N4	4.53e-62	84.21	polyadenylate-binding protein RBP47 OS=Cucumis melo OX=3656 GN=LOC103498402 PE=4...	[more]
A0A6J1JGT7	1.44e-58	81.20	polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Csor.00g071150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49600.1	6.2e-22	57.35	RNA-binding protein 47A	[more]
AT3G19130.1	6.2e-22	58.02	RNA-binding protein 47B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..133 e-value: 1.2E-6 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..99
None	No IPR available	PANTHER	PTHR47640:SF9	POLYADENYLATE-BINDING PROTEIN RBP47B	coord: 19..133
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 19..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 70..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g071150.m01	Csor.00g071150.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding