Csor.00g071060 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g071060
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	50S ribosomal protein L17
Location	Csor_Chr02: 2299155 .. 2306073 (-)
RNA-Seq Expression	Csor.00g071060
Synteny	Csor.00g071060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCCATTTCGCCTTCTTCTCCAACGAAAAACTCGCCTCCTCCCTTCGCTCTGGTTCAAGTGTTCCTTTTGATTTTGTAATGGATCTTCGTTCAAATTGTGGCTACAGATTGTTTTCAGTGGTTTCAATTTTATCAAAAACGTTGTATTGGATGATGATTTACAAATAACAAAATTAATTACCATTCTTCTTAGAGTATTAACAACATTATTAAAATTATTTCAAGCAAACTACGCTATTAAAATTATTTCAAGCAAACTACGCTTAATTTTGAAATTCATGTGATTGAGCTACGATAAAGAATAATGTGATTGAGCTACGATAAAGAATAATGCACGTTATTGATATAGACGGTAATTTCAATTTTTGAAGCATTTTTTAGTTATTTCATTTGTGAAGCATTTGAATCTCGGACAAGTTTTAATCCGTTTACTCTTCTTGAGTGATTCCTTGTTGTTTTGGATTCTTTAATATTTAAATAAGGTTTTTTTTTTAATAAGGTTGTTACGTCGTATTCTCAAAAGTTACAATGGTTTCGAGTGAAATTAATTTGATTTTGGGTTTTAGCATTTATAATCTAGAAATTTGTATATCGAGATTCACGACCCAATATTTTACTATGAGTCATGACTCAAAACGACAACGTGAATGCAAAGAAAACAGTTGAAAATGTATAAGGGCGGAATCATTTATTCCCATGAAAGAAAATTGCAATACAAAGGTTCAAACAAACAAAATTATGAAAATTTGAATGCAAAAGAAAAGACTCGACTAACGTCCCGGGACATGCATTTCTCTATATGACAATCCACCTCTCTAATCACACCCTACCTCGACCCAACGCACCTGAAAAAAATATAGATATAGCGACCCAACGCACCTAAAAAAAATATAGATATAACAGGGATGAGTATAAAATTATACAGTAAGTCATCTACTCGTAGGCTCTCATCTCGTTCTAAGCTTAACAGACAAGCGATATAAGGTCAGTGACTTGTCACTCTAATCATGGATCCCTGGGCCTTATCATTGTAACTCTTTCTATACATTATCAAGATGGTGCAAGCATTAAGAACTAGATACATTATACACAGTCAAAATAGTCATGCTCAACCGGGGCGATAACATCCATTAGCACCCTATCCATCAACACCCGGAACGCAGAATTCACAATTTTCTCATCCACCTTTCGGGATGCATAAGTAGCTAGCGCTACCAAGGGGTGTCCAAAACTGTTGATTTTCCTCAATTAGGTCCCTACTCATGTAAAAACATTGTTAGAATTGGAATCGGGACAAAAATTAGGCAAACAAAAGTCAAACGGGTAAAAAATGACCTTACACGCGTCGGGAAGGAGGCTAGTCGCAAGCGAACGCGCGAGTACCAAGCGTAGGTTGCTTTCGTGCAGTCATGGGTCAGCGCTCCGGTTCGGGTCACCGGTTCAGCTTGCTCGGATGGACCACAGGTTGGTTTGGTCGATGGGTTGTGGGTCGAGTCGAATCAACTCGTGGATCTGGAATCAGGTAGGGCACGCAAACGACACATTGGGGCCGCTTTGCTCCCCGTCCGACGCGTAGGCTTCAGCCGATGCCTGACACGTGTCACCGCCTTGCCAAGCCACACCTCACCAGTCGCCAGTCGACACGTGGCTGTCGGAAAAAATCTTCTCCCCTCCTATTCAAGAGAAAATTGGTAAGTTTTTTTTTTCCGAATCTTTACGTTTTGTTTTTGTATCTTTCGATCTACAACTCGAATCAACACGATCCCTTTTGCATGTTAGCATCCTTAGGAGAGCTCTCGGACCTTTAACAAGCTTCCGAATCAATAGAAAACCTTCTACAGATAACACATCTATTAGGTCTCGATCTGATCTGTAAAGTTACCTTATTTTCTATTTTAGTGTACACTAGTTCCACTTTCACCGTGCAATAGAAGGGACTGGGTCGATTTGGCTCGAATCTCTCAAAATTCTCACCTTTTTTCCATGATTTTGCTTTATCCTAATATTCTTATGTTCCAAAGCTAACAAACTCAATATTTTATAAAATTTTATTTTATATTTTGTGGTTGATTTTTAATTTTTTTTTTAATTTTGATATTTTAAGCAATTTTTAATACATAATATTTTGTTAAATTTTAATAAGGTATGAATTTTTTTTTAATATTTAATATATATATTTTTCTTAAATGTGATCGTTTGGTTTAAAAATTACTATAGTCATATTCTTATTTTTCAAAGCTAACAAACTCAATATTTTATTATATTTTATTTTATATTTTATATTTTATATTTTGTGATTGATTTTTTCAATTTTATTTTATTTTGATATTTTAAGCAATTTTTAATATATATATATTTTTAGCTTATATTTTTGTTAAACTTTAACACTAATTTTTTTTTTCAACGTATGGATTTTTTTAAATATTTAATAAATATATATATACATTCTTATTATTGATAAGAGGGAATGTGATCCTTAGTTTAAAATAGTTTGGCCCGAGCCTTTATTCATTTTTTATAATTTATTAATATAATCTTTTATTTTTTTTAAATTTATTTATTAATTAATTAATTATTTTAGATAAATTATCTGAGAATAATTTTGGTTTATAATTGCTAACAAATTTTTTATTTCATATTTTTATGGGTTGAATCAAAATATTTAAATCTAAAGAAAGTTTGTGTTAAAAATTAAACAAACTATATTGAAATATTAAAATAGTCACTTTAATATTTTAGTTTATAAATAAACCTAACTAAAAATAAATAATATATTTAAAATTATTTAACTCTAATAAATTTTTTAAGAAACTAATTTAGTACTAAATATTTTATAAGAATAAAATTATTTCTATTTTTTAGACAATAAATAAAAACTATGGTAACAAAAATGAATATAAACGATAGGATGTATATCACTTTATACAATAGATCACTGTTCGACGTCGGCTTAGAATAAACTGAAGTAACGATCATTGTTCTTCCTGATGCAGTTGTTGTCTTCAATCTAACAAAATCGGACAACATCTCAAAAGCCATAAAGGGCGAGAGAGTCGGGACGTTGATCGGAGGAACATGGAACTCAAACGTAACAAGTACGTGACAACGATTCTTGTATAGTAGGGATTTGACAGGAGATTTTGACATCAATAGCTTTTGGAACAATTTGCACGAGATTCGTTTATTTAAGGTATTGAAATCTTTTGTAAGATCTAAATCCCACCGCTAGTAGATATTGTCCGCTCTATCTCGTACATATCGCTGTCAGCTTTACGATTTTAACACGCTTCTACTAAAGAGAGATTTTCACACTCTTATAAGGAATGTTTCGTTTCTTTCCTTTTTTAACTAACGTGGGATCTCACAATCCACTCACCTCATTGACACATCGTTTGATGTCTGGCTCTTATACCATTTGTAACCGTTCAAGTCATTGTTAATAAATTAATTAATTTTTTAATATTTTAGAGACTTTGTATAAAATCTTATTAATATTTTTAAAGATTAGATACTTGTAAAAATAGACCAATTTTTTAATAACATTTTAATGTAATAATTAAAATTTGGTTGAAATTTTAATACGTGGTCGTTTCTGCTTGAGCTAAGGTGGAAGCCGAGAAGCTGCCTTTTCGGTTTCGTCCCTTTAAAACCCCCGAAACGAAACTGGAGGGTTTTTCATCTTCGAACTCAGTTTCAGCCATTAACAATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCACCGGGTGTCTATGCTGAGGTTGCTCACTCCTTTCAGCAACTATCAATTAAGTTTTATGTCCCAATTTTTGAACGTCTGTTCTCTTCTTTTGGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTACAAAGGTATCCCTATTGACTTTCTTCTTATCATTTATTGGAATCTCGATGTTTAACTTTTCTGAATTTTGCTTTTCCAAGTGATGCATTAGCTTCATGTTCACCCGAACCCCCCTTCGGTTTCGTTGTTAGATTATTTTATCTGAAGTTAATCGTAGGTTTGTTGCATTGTAAATGGAATTATCGGATGGTTGAAAATTTTGACGTCTTGTATTGTCTGAACTGAGCTTAGGTTTTGTTTTTTCTTAGAATCTGAATTTACAGATTTGGTTAGTTACATATTTGTCATCTCTTTCCCCTTGGGTTGATCTTTTCTGTTCCTTCAAATTTTAACCCCAAGCTTACTGTTGAAGGATATATTTCATTCCTTGAGATCAAGTATAGATTTTTTTTTTTTTTTTATTTAGAACATCAACACTATTATGAATTTATGACCATATTTTCAACTTATTTCTGCATTTGTCTTTCAACCTGTTTGCAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGTCCGTAGAACTTAACTTTTGTTTTCCCTTCTCAATGTTTTATTTATTTATTTTCTTCTTTTCCCCTCACTGGGGAGGGTGTGTTCTGCCTCCAAATTTTGATATAGGTTGTATGCTAAGAAGCACAGACAGTTTAGTCTGGCTCACATGTTCATGTTTGACAGACACTCCAACACTTATTGGACACTCGGTAACACTAGATTTGTATTAGATACTAGTTGTAGAAAGCCAATATTAATCCAATATTTGTAAACTTCTTTAGCATACTAAATAGACAAATAATACTATAGGACAAAAATAAATTTTTAGTGTAAAATACATCAAATTCATTGTATATAAATCCATTAAACTTGTTGAATTTAAAGTTTTCATACTGTATAAAAAGGATGTATATTTAAAAAAAAAAAATGCAAATTTTAACAAATGTGTCCTTACTGTGTGTGTCTGTGTCCTAGATTTGTAAAAAATGACATGTCATTGTGTTTGTATCGTATCCTTATCCATGCTTCATAGGTTGGATTCTTTATCAATTAGATTATATATGAAATTATATTTCAATTATTAGATGAAGGGCTATTTGGTAAAGGATAAATGCAAATGCCATGGTTCAAGATTTAGCTGATCTAAAATGAGTATGATGTAATAATTCGAGGGAGAGAAAAAGACAAGGCTCGGAGGTCAAGTTTTGCAATTCAATTCTAATGCAGGAAGCAAGAGATGGTATTGGGCATGGGCTTGATAAATATGTTTGCCGGTAACGGAGGAAAATTGGATTTGGTCTGCAACCAACATTGGAAGCTAAGCCAAATAAGAAAGAGGCATCTCCAATTAATGAGTTAGACCACTAAAATTTGGGCCCAGGATGATGCCTTTATTTCAAATCATTCTTATTTCAGTATTAGTAATCCTCAAAAGATGGAAACCAGAAATTAATTACGGGATATCAATATGGAGAAAGAAAGACCTTCGGAAGGAAGATTTGTTGTAACTATTTGAAAGTGAAGAGGAAGCCGTGGTTTGAAGTTTGTTGGATGTTGTTGAAATTAAAGTAGCAAAGCAGTTCCAGAGACATCATATAATGTTTGATTTTAAAATGTAATGACTCTGCGTTACATAAAGGTGTATATAGTTGGGTTGTCTTCTGCTTACTCTTATTTGCACCAAGGACACTGTCATTTACTTCAGACTCTAACTTGCTGTGATCGAGAAGAAAACCAATGAAATCAACCACAAACAGAGTTCTTGTAAAGGAATTATTAAATTATCTTTGAAGTTGATTAAACTGTCTTTGCTTCAAAGATAGTTTAATAATTATTTTACACCTTGAATTGCGTGCAAAGACACTCTTCCTGTGTTTTGTTCTCGAAAGGGTGCACTCTCTATAGGAGGCTTGAGAAGGGTTTGGATCTTCTGTTTGAGACTGCCAGTTTGCTCTTCATATTCGGAGTTGATGGCTTAGGGATTGATGGTAGAGCCCAGATTGGGGGTGTTTTTGCGCTCTCCTTTCAAGGAGCATGGTAGAGTTTTGTGGTAGGCCAATTTCTTTGTGTTTTGTGGGGATATCTGGTTTGGGAGGAATGATAGATTTTTAGAAAGGTCAAGAGATCAATTGATGATGTTGGTTAAGTGACTAGATTTAATGCCTCTTTCTGGACATCAATAACTAAATCTTTTTATAATTATGAGCTTTGTCTTGTTCTTGGGACTGTCCTTTTTTGTAGTTAGAGGCGTACTCTATTTTTTGTGTGTGTGTTAGGGCGGGTGTTTTATGTATGTCCTTGTATATTCTTTCATTTTTCTTAATGAAAGCATTGTTTATTATAAGAAAATCTTTATTTCACTATTTTCATTTTATTCATAAAAGATAAACATGTTGTGACTTTTTTTCCCCCCAATCTAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAGTGAGTCCCAAATTTGTTAACCCGTGGTTCATGCTTTTATTTATAAGTATTAAATTGGACGGATGTTATGTTCAACAGAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAGTAAGTGCTTACCATCGACAGCTGCTATGTTTCTTCAGTTATACAGCTGTATTAAATAATCGATAGATGATGTACGAAACGGTTATAAATAAATACTGCTGGTACAGTTTTTAATTGATTATTTGTGCTGTTGATACAAATTTATTGAAAGTTGAATCAATGTATGAATTCATAATTTCTCTATGCTATCGATACAGATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

mRNA sequence

ATGGCCATCCATTTCGCCTTCTTCTCCAACGAAAAACTCGCCTCCTCCCTTCGCTCTGTTGTTGTCTTCAATCTAACAAAATCGGACAACATCTCAAAAGCCATAAAGGGCGAGAGAGTCGGGACGTTGATCGGAGGAACATGGAACTCAAACGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

Coding sequence (CDS)

ATGGCCATCCATTTCGCCTTCTTCTCCAACGAAAAACTCGCCTCCTCCCTTCGCTCTGTTGTTGTCTTCAATCTAACAAAATCGGACAACATCTCAAAAGCCATAAAGGGCGAGAGAGTCGGGACGTTGATCGGAGGAACATGGAACTCAAACGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

Protein sequence

MAIHFAFFSNEKLASSLRSVVVFNLTKSDNISKAIKGERVGTLIGGTWNSNGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

Homology

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BLAST of Csor.00g071060 vs. ExPASy Swiss-Prot
Match: A0L5Z9 (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rplQ PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 47  TWNSNGSLCASRHAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMA 106
           T    G L A R A + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD APM+
Sbjct: 53  TLGKRGDLHARRQALSILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMS 112

Query: 107 YIEFIDRE 114
           +IE ++R+
Sbjct: 113 FIELVERD 120

[Close]

BLAST of Csor.00g071060 vs. ExPASy Swiss-Prot
Match: B6IRT1 (50S ribosomal protein L17 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplQ PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 6   AFFSNEKLASSLRSVVVFNLTKSDNISKAIKGERVGTLIGGTWNSNGSLCASRHAAAFVR 65
           A FSN   A      +   L K+ ++   +  ER+ TL        G L   R A A +R
Sbjct: 19  AMFSNMANALIKHEQIKTTLPKAKDLRPIV--ERLITL-----GKKGGLANKRLAYAELR 78

Query: 66  GDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 118
             D++ KLFT LA RYK R GGYTR+L+   R GDAAPM  IE +DR+ E +
Sbjct: 79  DHDMVEKLFTTLAERYKGRPGGYTRVLKAGFRYGDAAPMGVIELVDRDPEAK 123

[Close]

BLAST of Csor.00g071060 vs. ExPASy Swiss-Prot
Match: Q0AUL0 (50S ribosomal protein L17 OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) OX=335541 GN=rplQ PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-12
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 47  TWNSNGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAY 106
           T    G L A R AAA++  D+V+ KLF+++A RY++R GGYTRL++T  R GD APM  
Sbjct: 49  TLGKRGDLHARRQAAAYIMSDEVVQKLFSDIAARYEERNGGYTRLVKTGYRKGDGAPMVM 108

Query: 107 IEFID 112
           IE ++
Sbjct: 109 IELVE 113

[Close]

BLAST of Csor.00g071060 vs. ExPASy Swiss-Prot
Match: A1ALW8 (50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rplQ PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 47  TWNSNGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAY 106
           T    G L ++R AAAF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDAAPM+ 
Sbjct: 53  TLGKRGDLHSTRIAAAFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSI 112

Query: 107 IEFIDRE 114
           IE ++ E
Sbjct: 113 IELVEEE 119

[Close]

BLAST of Csor.00g071060 vs. ExPASy Swiss-Prot
Match: A5FZU0 (50S ribosomal protein L17 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplQ PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 47  TWNSNGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAY 106
           T    G L A R A A +R D ++ KLF  LA RYK+R GGYTR+L+  +R GDAA MA 
Sbjct: 53  TLGKRGGLHARRQAHALLRDDVIVAKLFDSLADRYKERQGGYTRVLKAGMRYGDAADMAV 112

Query: 107 IEFIDRENELR-QSKPPNPQ 126
           IE +DR+   + Q   P P+
Sbjct: 113 IELVDRDPAAKGQDSGPKPE 132

[Close]

BLAST of Csor.00g071060 vs. NCBI nr
Match: KAG6605121.1 (hypothetical protein SDJN03_02438, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (789), Expect = 1.27e-105
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAIHFAFFSNEKLASSLRSVVVFNLTKSDNISKAIKGERVGTLIGGTWNSNGSLCASRHA 60
           MAIHFAFFSNEKLASSLRSVVVFNLTKSDNISKAIKGERVGTLIGGTWNSNGSLCASRHA
Sbjct: 1   MAIHFAFFSNEKLASSLRSVVVFNLTKSDNISKAIKGERVGTLIGGTWNSNGSLCASRHA 60

Query: 61  AAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSK 120
           AAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSK
Sbjct: 61  AAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSK 120

Query: 121 PPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 156
           PPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 PPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 156

[Close]

BLAST of Csor.00g071060 vs. NCBI nr
Match: KAG6604277.1 (hypothetical protein SDJN03_04886, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272 bits (696), Expect = 1.37e-87
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 20  VVVFNLTKSDNISKAIKGERVGTLIGGTWNSNGSLCASRHAAAFVRGDDVLHKLFTELAY 79
           VVVFNLTK DNISKAIKGERVGTLIGGTWNSNGSLCASRHAAAFVRGDDVLHKLFTELAY
Sbjct: 296 VVVFNLTKPDNISKAIKGERVGTLIGGTWNSNGSLCASRHAAAFVRGDDVLHKLFTELAY 355

Query: 80  RYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSR 139
           RYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSR
Sbjct: 356 RYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSR 415

Query: 140 LSKQFAPPKEIKSDSEI 156
           LSKQFAPPKEIKSDSEI
Sbjct: 416 LSKQFAPPKEIKSDSEI 432

[Close]

BLAST of Csor.00g071060 vs. NCBI nr
Match: KAG7034436.1 (rplQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (543), Expect = 4.36e-68
Identity = 112/144 (77.78%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 16  SLRSVVVFNLTKSDNISKAI-KGERVGTLIGGT--WNSNGSLCASRHAAAFVRGDDVLHK 75
           S+   +V  L K + I   + K + +  L      +   GSLCASRHAAAFVRGDDVLHK
Sbjct: 16  SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHK 75

Query: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135
           LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM
Sbjct: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135

Query: 136 DPWTRSRLSKQFAPPKEIKSDSEI 156
           DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 136 DPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Csor.00g071060 vs. NCBI nr
Match: XP_023533917.1 (uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213 bits (543), Expect = 4.36e-68
Identity = 112/144 (77.78%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 16  SLRSVVVFNLTKSDNISKAI-KGERVGTLIGGT--WNSNGSLCASRHAAAFVRGDDVLHK 75
           S+   +V  L K + I   + K + +  L      +   GSLCASRHAAAFVRGDDVLHK
Sbjct: 16  SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHK 75

Query: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135
           LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM
Sbjct: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135

Query: 136 DPWTRSRLSKQFAPPKEIKSDSEI 156
           DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 136 DPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Csor.00g071060 vs. NCBI nr
Match: XP_022979157.1 (uncharacterized protein LOC111478877 [Cucurbita maxima])

HSP 1 Score: 213 bits (542), Expect = 1.19e-67
Identity = 109/138 (78.99%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 31  ISKAIKGERVGTLIGGT------------WNSNGSLCASRHAAAFVRGDDVLHKLFTELA 90
           +S+ +K ER+ T +               +   GSLCA+RHAAAFVRGDDVLHKLFTELA
Sbjct: 42  VSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAARHAAAFVRGDDVLHKLFTELA 101

Query: 91  YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS 150
           YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS
Sbjct: 102 YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS 161

Query: 151 RLSKQFAPPKEIKSDSEI 156
           RLSKQFAPPKEIKSDSEI
Sbjct: 162 RLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of Csor.00g071060 vs. ExPASy TrEMBL
Match: A0A6J1IN09 (uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 5.78e-68
Identity = 109/138 (78.99%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 31  ISKAIKGERVGTLIGGT------------WNSNGSLCASRHAAAFVRGDDVLHKLFTELA 90
           +S+ +K ER+ T +               +   GSLCA+RHAAAFVRGDDVLHKLFTELA
Sbjct: 42  VSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAARHAAAFVRGDDVLHKLFTELA 101

Query: 91  YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS 150
           YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS
Sbjct: 102 YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS 161

Query: 151 RLSKQFAPPKEIKSDSEI 156
           RLSKQFAPPKEIKSDSEI
Sbjct: 162 RLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of Csor.00g071060 vs. ExPASy TrEMBL
Match: A0A6J1GDM4 (uncharacterized protein LOC111453209 OS=Cucurbita moschata OX=3662 GN=LOC111453209 PE=3 SV=1)

HSP 1 Score: 210 bits (534), Expect = 4.95e-67
Identity = 111/144 (77.08%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 16  SLRSVVVFNLTKSDNISKAI-KGERVGTLIGGT--WNSNGSLCASRHAAAFVRGDDVLHK 75
           S+   +V  L K + I   + K + +  L      +   GSLCASRHAAAFVRGDDVLHK
Sbjct: 16  SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHK 75

Query: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135
           LFTELAYRYK RAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM
Sbjct: 76  LFTELAYRYKYRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135

Query: 136 DPWTRSRLSKQFAPPKEIKSDSEI 156
           DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 136 DPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Csor.00g071060 vs. ExPASy TrEMBL
Match: A0A6J1G6G2 (uncharacterized protein LOC111451296 OS=Cucurbita moschata OX=3662 GN=LOC111451296 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 4.40e-66
Identity = 109/142 (76.76%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 16  SLRSVVVFNLTKSDNISKAI-KGERVGTLIGGT--WNSNGSLCASRHAAAFVRGDDVLHK 75
           S+   +V  L K + I   + K + +  L      +   GSLCASRHAAAFVRGDDVLHK
Sbjct: 16  SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHK 75

Query: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135
           LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM
Sbjct: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135

Query: 136 DPWTRSRLSKQFAPPKEIKSDS 154
           DPWTRSRLSKQFAPPKEIKSD+
Sbjct: 136 DPWTRSRLSKQFAPPKEIKSDT 157

[Close]

BLAST of Csor.00g071060 vs. ExPASy TrEMBL
Match: A0A6J1BS83 (uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005280 PE=3 SV=1)

HSP 1 Score: 203 bits (516), Expect = 2.72e-64
Identity = 104/138 (75.36%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 31  ISKAIKGERVGTLIGGT------------WNSNGSLCASRHAAAFVRGDDVLHKLFTELA 90
           +S+ +K ER+ T +               +    SLCA+R AAAFVRGDDVLHKLFTELA
Sbjct: 22  VSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAARRAAAFVRGDDVLHKLFTELA 81

Query: 91  YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS 150
           YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQP QKAP+DPWTRS
Sbjct: 82  YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPQQKAPLDPWTRS 141

Query: 151 RLSKQFAPPKEIKSDSEI 156
           RLSKQFAPPKEIKSDSE+
Sbjct: 142 RLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of Csor.00g071060 vs. ExPASy TrEMBL
Match: A0A2N9GBE6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24662 PE=3 SV=1)

HSP 1 Score: 198 bits (504), Expect = 1.82e-62
Identity = 101/138 (73.19%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 31  ISKAIKGERVGTLIGGT------------WNSNGSLCASRHAAAFVRGDDVLHKLFTELA 90
           +S+ +K ER+ T +                   GSLCA+R AAAFVRGDDV+HKLFTELA
Sbjct: 22  VSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 81

Query: 91  YRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRS 150
           YRYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENELRQSKPP PQPPQKAP+DPWTRS
Sbjct: 82  YRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPPTPQPPQKAPLDPWTRS 141

Query: 151 RLSKQFAPPKEIKSDSEI 156
           RLSKQFAPPKE +S+SEI
Sbjct: 142 RLSKQFAPPKEDRSESEI 159

[Close]

BLAST of Csor.00g071060 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-45
Identity = 96/145 (66.21%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 16  SLRSVVVFNLTKSDNISKAI-KGERVGTLIGG--TWNSNGSLCASRHAAAFVRGDDVLHK 75
           S+   +V  L K + I   + K + V  L          GSL A+R AA FVRGDDVLHK
Sbjct: 16  SMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAGFVRGDDVLHK 75

Query: 76  LFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPM 135
           +FTELA+RYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKP  PQPPQ+ P+
Sbjct: 76  IFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPQRVPL 135

Query: 136 DPWTRSRLSKQFAPPKEIK-SDSEI 157
           DPW RSRL++QFAPPKE K  DSE+
Sbjct: 136 DPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of Csor.00g071060 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-44
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 52  GSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFID 111
           GSL A+R AA FVRGDDVLHK+FTELA+RYKDRAGGYTR+LRTRIRVGDAAPMAYIEFID
Sbjct: 55  GSLAAARRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFID 114

Query: 112 RENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI 157
           RENELRQSKP  PQPP + P+DPW RSRL++Q+APPKE K SDS++
Sbjct: 115 RENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Csor.00g071060 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-10
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 47  TWNSNGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAY 106
           T   +GSL   R A  ++    ++H LF E+  RY +R GGYTR++RT  R GD APMAY
Sbjct: 148 TLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAY 207

Query: 107 IEFI 111
           IE +
Sbjct: 208 IELV 211

[Close]

BLAST of Csor.00g071060 vs. TAIR 10
Match: AT3G18680.1 (Amino acid kinase family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-08
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 20  VVVFNLTKSDNISKAIKGERVGTLIGGTWNS 51
           VVVFNL++  NI+KAIKGERVGTLIGGTWNS
Sbjct: 303 VVVFNLSEPGNIAKAIKGERVGTLIGGTWNS 333

The following BLAST results are available for this feature:

BLAST of Csor.00g071060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0L5Z9	9.3e-14	54.41	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
B6IRT1	6.6e-12	41.07	50S ribosomal protein L17 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q0AUL0	8.7e-12	49.23	50S ribosomal protein L17 OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 224...	[more]
A1ALW8	1.1e-11	50.75	50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 1038...	[more]
A5FZU0	1.5e-11	47.50	50S ribosomal protein L17 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]

BLAST of Csor.00g071060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605121.1	1.27e-105	100.00	hypothetical protein SDJN03_02438, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604277.1	1.37e-87	99.27	hypothetical protein SDJN03_04886, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034436.1	4.36e-68	77.78	rplQ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533917.1	4.36e-68	77.78	uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo]	[more]
XP_022979157.1	1.19e-67	78.99	uncharacterized protein LOC111478877 [Cucurbita maxima]	[more]

BLAST of Csor.00g071060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IN09	5.78e-68	78.99	uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877...	[more]
A0A6J1GDM4	4.95e-67	77.08	uncharacterized protein LOC111453209 OS=Cucurbita moschata OX=3662 GN=LOC1114532...	[more]
A0A6J1G6G2	4.40e-66	76.76	uncharacterized protein LOC111451296 OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]
A0A6J1BS83	2.72e-64	75.36	uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A2N9GBE6	1.82e-62	73.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24662 PE=3 SV=1	[more]

BLAST of Csor.00g071060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09770.1	6.1e-45	66.21	Ribosomal protein L17 family protein	[more]
AT5G64650.1	4.0e-44	80.19	Ribosomal protein L17 family protein	[more]
AT3G54210.1	2.9e-10	46.88	Ribosomal protein L17 family protein	[more]
AT3G18680.1	3.5e-08	83.87	Amino acid kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 41..111 e-value: 2.7E-20 score: 70.7
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 51..110 e-value: 4.8E-15 score: 56.3
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 24..153
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 13..110 e-value: 1.4E-18 score: 69.1
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 51..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..156
None	No IPR available	PANTHER	PTHR14413:SF22	BNAA09G06940D PROTEIN	coord: 24..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g071060.m01	Csor.00g071060.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome