Csor.00g070560 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g070560
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 10859295 .. 10859597 (+)
RNA-Seq ExpressionCsor.00g070560
SyntenyCsor.00g070560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCGGCGATGGAGGACCAAGTCGACTGGGAGGAGATGCGGCGGCGGCTGCTACTCTGCAGGACCAAGAGCATGCCCGCCCAGTTTTAAGCCGCGTTTTCCGATGGATCTCATGCGAATGTTATCAGACGGCCACCCGGATCCAAACCTACAGTCGATGGAGTTCTTCACAAGTGGACCAATTCACGGGAAATGGGGGAGATCCCAGATGGTTTTCTTCTCCGTAATCGGCGTGTTGTCCTACGTCAAGATTCGCCGGCCTGAAGAATCTGAATCCTTCGTTGCTTCAAACAACGACTAA

mRNA sequence

ATGCGCCGGCGATGGAGGACCAAGTCGACTGGGAGGAGATGCGGCGGCGGCTGCTACTCTGCAGGACCAAGAGCATGCCCGCCCAGTTTTAAGCCGCGTTTTCCGATGGATCTCATGCGAATGTTATCAGACGGCCACCCGGATCCAAACCTACAGTCGATGGAGTTCTTCACAAGTGGACCAATTCACGGGAAATGGGGGAGATCCCAGATGGTTTTCTTCTCCGTAATCGGCGTGTTGTCCTACGTCAAGATTCGCCGGCCTGAAGAATCTGAATCCTTCGTTGCTTCAAACAACGACTAA

Coding sequence (CDS)

ATGCGCCGGCGATGGAGGACCAAGTCGACTGGGAGGAGATGCGGCGGCGGCTGCTACTCTGCAGGACCAAGAGCATGCCCGCCCAGTTTTAAGCCGCGTTTTCCGATGGATCTCATGCGAATGTTATCAGACGGCCACCCGGATCCAAACCTACAGTCGATGGAGTTCTTCACAAGTGGACCAATTCACGGGAAATGGGGGAGATCCCAGATGGTTTTCTTCTCCGTAATCGGCGTGTTGTCCTACGTCAAGATTCGCCGGCCTGAAGAATCTGAATCCTTCGTTGCTTCAAACAACGACTAA

Protein sequence

MRRRWRTKSTGRRCGGGCYSAGPRACPPSFKPRFPMDLMRMLSDGHPDPNLQSMEFFTSGPIHGKWGRSQMVFFSVIGVLSYVKIRRPEESESFVASNND
Homology
[Close]
BLAST of Csor.00g070560 vs. NCBI nr
Match: KAG6581719.1 (hypothetical protein SDJN03_21721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (538), Expect = 3.80e-69
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MRRRWRTKSTGRRCGGGCYSAGPRACPPSFKPRFPMDLMRMLSDGHPDPNLQSMEFFTSG 60
           MRRRWRTKSTGRRCGGGCYSAGPRACPPSFKPRFPMDLMRMLSDGHPDPNLQSMEFFTSG
Sbjct: 1   MRRRWRTKSTGRRCGGGCYSAGPRACPPSFKPRFPMDLMRMLSDGHPDPNLQSMEFFTSG 60

Query: 61  PIHGKWGRSQMVFFSVIGVLSYVKIRRPEESESFVASNND 100
           PIHGKWGRSQMVFFSVIGVLSYVKIRRPEESESFVASNND
Sbjct: 61  PIHGKWGRSQMVFFSVIGVLSYVKIRRPEESESFVASNND 100

[Close]
BLAST of Csor.00g070560 vs. NCBI nr
Match: KAG7036131.1 (Oxysterol-binding protein-related protein 2A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 50.8 bits (120), Expect = 1.07e-04
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 41  MLSDGHPDPNLQSMEFFTSGPIHGKWGRSQMVFFSVIGVLSYVKIRRPEESESFVASNND 100
           M ++GH DPN QS++    GPI GK G     FFSV+  LSY KIRRPE   + +ASNND
Sbjct: 44  MPANGHRDPNPQSLD----GPITGKGGDPDG-FFSVMACLSYAKIRRPENL-NLLASNND 97

The following BLAST results are available for this feature:
BLAST of Csor.00g070560 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g070560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581719.13.80e-69100.00hypothetical protein SDJN03_21721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7036131.11.07e-0453.33Oxysterol-binding protein-related protein 2A, partial [Cucurbita argyrosperma su... [more]
BLAST of Csor.00g070560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g070560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g070560.m01Csor.00g070560.m01mRNA