Csor.00g070230 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g070230
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	NAC domain-containing protein
Location	Csor_Chr19: 1444667 .. 1445199 (-)
RNA-Seq Expression	Csor.00g070230
Synteny	Csor.00g070230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCTGGCTACGTTTTGGAGTCATCGACGCGAACATCTCTATTTCTTCATCAAACTCAAGTGTCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCGGCTATCGCAAGTGCTTCAGGTTCGTTCTATTATTTTGATTTCAATCTTCGTTAGAATCTTTAACCTTTTGTTTGTATTCTTTGAACATTTTAGGTACAAGAATGTCCAATTGTTGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGAAACACCAAATTGAAGATTCGAATTATGTTTTATGTCAACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGACCTGGATCGACCATTGAACAAGACACTATGTCTGACGTGACCATCGATGAAGATATGAGTTCATAA

mRNA sequence

ATGGAAAATCTGGCTACGTTTTGGAGTCATCGACGCGAACATCTCTATTTCTTCATCAAACTCAAGTGTCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCGGCTATCGCAAGTGCTTCAGGTACAAGAATGTCCAATTGTTGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGAAACACCAAATTGAAGATTCGAATTATGTTTTATGTCAACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGACCTGGATCGACCATTGAACAAGACACTATGTCTGACGTGACCATCGATGAAGATATGAGTTCATAA

Coding sequence (CDS)

ATGGAAAATCTGGCTACGTTTTGGAGTCATCGACGCGAACATCTCTATTTCTTCATCAAACTCAAGTGTCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCGGCTATCGCAAGTGCTTCAGGTACAAGAATGTCCAATTGTTGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGAAACACCAAATTGAAGATTCGAATTATGTTTTATGTCAACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGACCTGGATCGACCATTGAACAAGACACTATGTCTGACGTGACCATCGATGAAGATATGAGTTCATAA

Protein sequence

MENLATFWSHRREHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFRYKNVQLLEHHGEWIMHEDSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKKRITGPGSTIEQDTMSDVTIDEDMSS

Homology

[Close]

BLAST of Csor.00g070230 vs. NCBI nr
Match: KAG6571618.1 (hypothetical protein SDJN03_28346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311 bits (797), Expect = 5.66e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MENLATFWSHRREHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKT 60
           MENLATFWSHRREHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKT
Sbjct: 1   MENLATFWSHRREHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKT 60

Query: 61  DKQIIGYRKCFRYKNVQLLEHHGEWIMHEDSKHQIEDSNYVLCQLSKNERLKRKLGKNLE 120
           DKQIIGYRKCFRYKNVQLLEHHGEWIMHEDSKHQIEDSNYVLCQLSKNERLKRKLGKNLE
Sbjct: 61  DKQIIGYRKCFRYKNVQLLEHHGEWIMHEDSKHQIEDSNYVLCQLSKNERLKRKLGKNLE 120

Query: 121 LQRHSKKRITGPGSTIEQDTMSDVTIDEDMSS 152
           LQRHSKKRITGPGSTIEQDTMSDVTIDEDMSS
Sbjct: 121 LQRHSKKRITGPGSTIEQDTMSDVTIDEDMSS 152

[Close]

BLAST of Csor.00g070230 vs. NCBI nr
Match: XP_023511529.1 (uncharacterized protein LOC111776332 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242 bits (618), Expect = 6.33e-79
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           E LYFFIKLK  TNNS  L AHIN K+GLANGTWSGENLVK IFATKTDKQIIGYRKCFR
Sbjct: 65  ERLYFFIKLKRSTNNSGRLSAHINRKVGLANGTWSGENLVKSIFATKTDKQIIGYRKCFR 124

Query: 73  YKNVQLLEHHGEWIMHEDSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKKRITGP 132
           Y+NVQL EHHGEWIMHEDS HQ+EDSNYVLC+LSKNERLKRKLGKNLELQRHSKKRIT P
Sbjct: 125 YENVQLSEHHGEWIMHEDSIHQVEDSNYVLCRLSKNERLKRKLGKNLELQRHSKKRITRP 184

Query: 133 GSTIEQDTMSDVTIDEDMSS 152
            STIEQDTMSDVT+DEDMSS
Sbjct: 185 ESTIEQDTMSDVTMDEDMSS 204

[Close]

BLAST of Csor.00g070230 vs. NCBI nr
Match: KAG6571619.1 (NAC domain-containing protein 30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227 bits (579), Expect = 6.20e-73
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           E LYFF KLK LTNNSEHLWAHIN KIGLANGTWSGENL  PIFATKTDKQIIGY KCFR
Sbjct: 64  EDLYFFTKLKRLTNNSEHLWAHINHKIGLANGTWSGENLASPIFATKTDKQIIGYCKCFR 123

Query: 73  YKNVQLLEHHGEWIMHE-----DSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKK 132
           Y+N+QL EHHGEW MHE     DS HQ+ DS+YVLC+LSKNERL+RKL KNLELQ+HSKK
Sbjct: 124 YENIQLPEHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKNERLERKLPKNLELQQHSKK 183

Query: 133 RITGPGSTIEQDTMSDVTIDEDM 150
           RI  PGSTIEQDTMSD TID+D+
Sbjct: 184 RIMAPGSTIEQDTMSDTTIDQDI 206

[Close]

BLAST of Csor.00g070230 vs. NCBI nr
Match: XP_023511533.1 (NAC domain-containing protein 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226 bits (576), Expect = 1.77e-72
Identity = 114/142 (80.28%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           ++LYFF KLK LTNNSEHLWAHIN KIGLANGTWSGEN   PIFATKTDKQIIGY KCFR
Sbjct: 64  QYLYFFTKLKRLTNNSEHLWAHINRKIGLANGTWSGENSASPIFATKTDKQIIGYCKCFR 123

Query: 73  YKNVQLLEHHGEWIMHE-----DSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKK 132
           Y+NVQL EHHGEW MHE     DS HQ+ DS+YVLC+LSKNER+KRKL KNLELQ+HSKK
Sbjct: 124 YENVQLPEHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKNERVKRKLLKNLELQQHSKK 183

Query: 133 RITGPGSTIEQDTMSDVTIDED 149
           RI  PGSTIEQDTMSDVTID+D
Sbjct: 184 RIMAPGSTIEQDTMSDVTIDQD 205

[Close]

BLAST of Csor.00g070230 vs. NCBI nr
Match: XP_022963930.1 (uncharacterized protein LOC111464082 [Cucurbita moschata])

HSP 1 Score: 223 bits (567), Expect = 8.53e-72
Identity = 113/142 (79.58%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           E LYFF KLK LTNNSEHLWA+IN KIGLANGTWSGEN   PIFATKTDKQIIGY KCFR
Sbjct: 16  EDLYFFTKLKRLTNNSEHLWAYINRKIGLANGTWSGENSASPIFATKTDKQIIGYFKCFR 75

Query: 73  YKNVQLLEHHGEWIMHE-----DSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKK 132
           Y+NVQL EHHGEW MHE     DS HQ+ DS+YVLC+LSKNER++RKL KNLELQ+HSKK
Sbjct: 76  YENVQLPEHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKNERVERKLPKNLELQQHSKK 135

Query: 133 RITGPGSTIEQDTMSDVTIDED 149
           RIT PGSTI QDTMSDVTID+D
Sbjct: 136 RITAPGSTIGQDTMSDVTIDQD 157

[Close]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL
Match: A0A6J1HJD2 (uncharacterized protein LOC111464082 OS=Cucurbita moschata OX=3662 GN=LOC111464082 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 4.13e-72
Identity = 113/142 (79.58%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           E LYFF KLK LTNNSEHLWA+IN KIGLANGTWSGEN   PIFATKTDKQIIGY KCFR
Sbjct: 16  EDLYFFTKLKRLTNNSEHLWAYINRKIGLANGTWSGENSASPIFATKTDKQIIGYFKCFR 75

Query: 73  YKNVQLLEHHGEWIMHE-----DSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKK 132
           Y+NVQL EHHGEW MHE     DS HQ+ DS+YVLC+LSKNER++RKL KNLELQ+HSKK
Sbjct: 76  YENVQLPEHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKNERVERKLPKNLELQQHSKK 135

Query: 133 RITGPGSTIEQDTMSDVTIDED 149
           RIT PGSTI QDTMSDVTID+D
Sbjct: 136 RITAPGSTIGQDTMSDVTIDQD 157

[Close]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL
Match: A0A6J1HXC3 (NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 4.58e-63
Identity = 104/142 (73.24%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           EHLYFF KLK  TNNS  L AHIN K+GLANGTWSGEN   PIFATKTDKQIIGY KCFR
Sbjct: 64  EHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSGSPIFATKTDKQIIGYCKCFR 123

Query: 73  YKNVQLLEHHGEWIMHE-----DSKHQIEDSNYVLCQLSKNERLKRKLGKNLELQRHSKK 132
           Y+N+QL +HHGEW MHE     DS HQ+ DS+YVLC+LSK+ RLKRKL KNLELQ+HSKK
Sbjct: 124 YENIQLPQHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKHGRLKRKLPKNLELQQHSKK 183

Query: 133 RITGPGSTIEQDTMSDVTIDED 149
           RIT P STI QD MS++TID+D
Sbjct: 184 RITAPRSTIGQDIMSNMTIDQD 205

[Close]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 5.85e-47
Identity = 85/123 (69.11%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           EHLYFF KLK  TNNS  L AHIN K+GLANGTWSGEN   PIFATKTD  IIGY K FR
Sbjct: 64  EHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFR 123

Query: 73  YKNVQLLEHHGEWIMHEDSKHQIE-----DSNYVLCQLSKNERLKRKLGKNLELQRHSKK 130
           Y+NVQL E HGEWIMHE S HQ       D +YVLC+  KNERLKRKL K+LE Q+HSK+
Sbjct: 124 YENVQLPERHGEWIMHEYSLHQDSIQQAVDLDYVLCRFKKNERLKRKLQKDLEEQQHSKR 183

[Close]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 1.31e-45
Identity = 85/123 (69.11%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           E LYFF KLK  TNNS  L AHIN K+GLANGTWSGEN    IFATKTDK IIGY K FR
Sbjct: 64  EDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCKRFR 123

Query: 73  YKNVQLLEHHGEWIMHEDSKHQIE-----DSNYVLCQLSKNERLKRKLGKNLELQRHSKK 130
           Y+N QL EHHGEWIMHE S HQ       DSNYVLC+  KNER KRKL K+LE Q+ SKK
Sbjct: 124 YENAQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERFKRKLQKDLEEQQLSKK 183

[Close]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL
Match: A0A5D3CNQ3 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00810 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 2.43e-38
Identity = 78/126 (61.90%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 13  EHLYFFIKLKCLTNNSEHLWAHINSKIGLANGTWSGENLVKPIFATKTDKQIIGYRKCFR 72
           E LYFF KLK  T N   L AHI+ KIGLANGTWSGEN   PIFA + D+QIIGYRK FR
Sbjct: 69  EDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFANEDDEQIIGYRKRFR 128

Query: 73  YKNVQLLEHHGEWIMHEDSKHQIE------DSNYVLCQLSKNERLKRKLGKNLELQRHSK 132
           Y+N Q+ EHHGEWIMHE   HQ        D NYVLC++ KNER KRKL +  ELQ+ +K
Sbjct: 129 YENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAKRKL-EIRELQQPNK 188

The following BLAST results are available for this feature:

BLAST of Csor.00g070230 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g070230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571618.1	5.66e-107	100.00	hypothetical protein SDJN03_28346, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023511529.1	6.33e-79	87.86	uncharacterized protein LOC111776332 [Cucurbita pepo subsp. pepo]	[more]
KAG6571619.1	6.20e-73	79.72	NAC domain-containing protein 30, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023511533.1	1.77e-72	80.28	NAC domain-containing protein 30-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963930.1	8.53e-72	79.58	uncharacterized protein LOC111464082 [Cucurbita moschata]	[more]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJD2	4.13e-72	79.58	uncharacterized protein LOC111464082 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1HXC3	4.58e-63	73.24	NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=...	[more]
A0A6J1HSR6	5.85e-47	69.11	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HH13	1.31e-45	69.11	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A5D3CNQ3	2.43e-38	61.90	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Csor.00g070230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 9..89 e-value: 3.3E-6 score: 28.0
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 1..108 score: 11.206313
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 2..112 e-value: 1.8E-9 score: 39.6
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 9..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..152
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 13..142
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 13..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g070230.m01	Csor.00g070230.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding