Csor.00g068090 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTTACCTTCTTCCCGAAATCTTCGGCTAATTTCCTTCAGAAACATCGGAGGGGGAAAACAGGGGTCACCAGCTTTCTTTGCTTCAACAAGATTCCATCCCCTCCTTGTAAGTTTCTTCCTCTTTTCTTTCCTTTCTTTATTGGTTTCCCTTTTGTTATATTCCTGTTTCCTGTTTTTGATTCTTTTGTGTTTCTTCTTACCTTTTCTGTTTTGGGTGTTTTTCTTTTTTCCCTTATCTCCTTTCTTCCATTCAACCCTTTTCTTGTTCTAAAGTTTTTCCGATGTTTCTTTCCTGGGTTTCTGTTAGGAAGGTTATTGGTGGATGGTGGGGTTTTCAACTAACATATACCTCTATCAACGACATGGGTATCCTCTGTAGTCTTTGTTTGTTGTAGCCGGTACTCTCATTTATCTACTTTTTTCATTGCCTCCACATCTTATTTAATCTTTACACTTGTAATCTACAACATAAACCCATTCACTGGAAACAACTAAGCCTTGATTTCTTGTATCTATATGCTATTTGGTCAGTTTAAAGATTGTAAAATATCTTTTTCCTGATATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGGAGACGACATTAGAAGCAGCGATTGAGAGCCGAAAGCGATTGACTGAAGCAACGTCCTCTGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGAGTTTGACAATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGGTTTGTTGATGAACTCATTGAATTAAATTGGCCAAATTTCCATATTAAGTCATTGCATGCCAAGTATAGCTGATCTTGTTCTTGTCTAGCATTTTATTACAAATATGGAGCCTAGTGATAAACTCCTTTGCACTTTTGGAAAGCTAGCACATTGATATCTGCCGTAGTTGTCATTCTAATGCAGTTCACACCTCAAACACAACCCATGTTGTCAAACTGAGCGGCTCTTGATTTCTGTATCAATTATATTTCTCCTTTCAACGTGTAGTGCCTCAAGAGTTTTATCATTTAGTATGCCAGCGCTTCTGATATGATAATGCAAGTTTTCTTGACATGTTCCGTTGAATTTTGCAGTATGCACATCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCACCAGGTGGAGTATGGTGTTTTTTATTTCTTTCCTCCTTAAAAAATCATAATAGTAAAACAAATTGAAGCAGTTCATTGACGTAAGATTACAATCTCTAGCACGATTGTCTTTTTCGGCCTGAGAAGATCAGTATGTTTAATGCAGTTTGTACAACGAAACTGAACCGTGTAACTATGATTTGCAGCAATTCAAACCAGGTTACACAGCTTCTCCTCCATTATTCGAAATGGGGCGTATTCCAATGAGCTTCAGGTAATGCTCGTGCAACAATTCATACAATGTATGTTTGTTCTGCTTCAACTTGAGAATGATTGACCCCTATTCCATTGCAGGGGGAACTGGGAGATTTCTCGAAGGAACTTGGATAGTTCTAGCTATATAGCAATGGTTTCTTCAAACCGTAATGTTGTTGATACCGACTATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTGCCATTCGTTTGCTATTGTTGTAAGTTTTCTTTCAGTTCTTTCCAAACGCACAATTTTTGTAATGGTGATCATAAGATGTTTTCGAAATAACCCGTGTTTAAATTCGTGTTAGGGGAATATCAAAATCTGAACCACATGTTTCTCTTTTTCTTTGTAGTTCATGGTTCTTCTGGTTTTGAGGCACTCTCTTCCCCTCATATTCAATGAAAGCGATGGTTACTCTTTCCCTCTGCTTCTGGTGAGAAATCTCTATTTTCAAACAAATGCAAAACCAAGATTTGTGCATGAAGTTAAACTATTCCCTTTTAATGACAGTCGATTTGCCTGCGAAGTTTACTGATCTTTCTACCAATATACGTTATGTTCAAAGTAGTCTCTGCAGTTCATCGCCGTCGACTTCTCGTAAGCGTTCGTATACAATTAACAGACATTTTCATGCCATCCTCTCAGTGATAACTCTATTGTATTAATGGTTTCTTGTGTTTGGATGACTATGATCAGCTGGCTACATCTTCTAGTTCATCCATTCATTCAACCAGCATAGTTAGGAGTTCGACATCCGTATCATCCCAACCTCAGCCTTACATTATCCGCGTTCGGTCAGTTTCATAG ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTTACCTTCTTCCCGAAATCTTCGGCTAATTTCCTTCAGAAACATCGGAGGGGGAAAACAGGGGTCACCAGCTTTCTTTGCTTCAACAAGATTCCATCCCCTCCTTTCTTTGTTTGTTGTAGCCGTTTAAAGATTGTAAAATATCTTTTTCCTGATATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGGAGACGACATTAGAAGCAGCGATTGAGAGCCGAAAGCGATTGACTGAAGCAACGTCCTCTGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGAGTTTGACAATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGTATGCACATCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCACCAGCAATTCAAACCAGGTTACACAGCTTCTCCTCCATTATTCGAAATGGGGCGTATTCCAATGAGCTTCAGGGGGAACTGGGAGATTTCTCGAAGGAACTTGGATAGTTCTAGCTATATAGCAATGGTTTCTTCAAACCGTAATGTTGTTGATACCGACTATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTGCCATTCGTTTGCTATTGTTTTCATGGTTCTTCTGGTTTTGAGGCACTCTCTTCCCCTCATATTCAATGAAAGCGATGGTTACTCTTTCCCTCTGCTTCTGTCGATTTGCCTGCGAAGTTTACTGATCTTTCTACCAATATACGTTATGTTCAAAGTAGTCTCTGCAGTTCATCGCCGTCGACTTCTCCTGGCTACATCTTCTAGTTCATCCATTCATTCAACCAGCATAGTTAGGAGTTCGACATCCGTATCATCCCAACCTCAGCCTTACATTATCCGCGTTCGGTCAGTTTCATAG ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTTACCTTCTTCCCGAAATCTTCGGCTAATTTCCTTCAGAAACATCGGAGGGGGAAAACAGGGGTCACCAGCTTTCTTTGCTTCAACAAGATTCCATCCCCTCCTTTCTTTGTTTGTTGTAGCCGTTTAAAGATTGTAAAATATCTTTTTCCTGATATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGGAGACGACATTAGAAGCAGCGATTGAGAGCCGAAAGCGATTGACTGAAGCAACGTCCTCTGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGAGTTTGACAATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGTATGCACATCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCACCAGCAATTCAAACCAGGTTACACAGCTTCTCCTCCATTATTCGAAATGGGGCGTATTCCAATGAGCTTCAGGGGGAACTGGGAGATTTCTCGAAGGAACTTGGATAGTTCTAGCTATATAGCAATGGTTTCTTCAAACCGTAATGTTGTTGATACCGACTATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTGCCATTCGTTTGCTATTGTTTTCATGGTTCTTCTGGTTTTGAGGCACTCTCTTCCCCTCATATTCAATGAAAGCGATGGTTACTCTTTCCCTCTGCTTCTGTCGATTTGCCTGCGAAGTTTACTGATCTTTCTACCAATATACGTTATGTTCAAAGTAGTCTCTGCAGTTCATCGCCGTCGACTTCTCCTGGCTACATCTTCTAGTTCATCCATTCATTCAACCAGCATAGTTAGGAGTTCGACATCCGTATCATCCCAACCTCAGCCTTACATTATCCGCGTTCGGTCAGTTTCATAG MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKTGVTSFLCFNKIPSPPFFVCCSRLKIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQQFKPGYTASPPLFEMGRIPMSFRGNWEISRRNLDSSSYIAMVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDGYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHSTSIVRSSTSVSSQPQPYIIRVRSVS Homology
BLAST of Csor.00g068090 vs. ExPASy Swiss-Prot
Match: Q99M02 (E3 ubiquitin-protein ligase MARCHF2 OS=Mus musculus OX=10090 GN=MARCHF2 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07 Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy Swiss-Prot
Match: Q5I0I2 (E3 ubiquitin-protein ligase MARCHF2 OS=Rattus norvegicus OX=10116 GN=Marchf2 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07 Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy Swiss-Prot
Match: Q9P2E8 (E3 ubiquitin-protein ligase MARCHF4 OS=Homo sapiens OX=9606 GN=MARCHF4 PE=2 SV=2) HSP 1 Score: 57.0 bits (136), Expect = 4.9e-07 Identity = 27/89 (30.34%), Postives = 41/89 (46.07%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy Swiss-Prot
Match: Q5T0T0 (E3 ubiquitin-protein ligase MARCHF8 OS=Homo sapiens OX=9606 GN=MARCHF8 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 8.3e-07 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy Swiss-Prot
Match: Q9DBD2 (E3 ubiquitin-protein ligase MARCHF8 OS=Mus musculus OX=10090 GN=Marchf8 PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 8.3e-07 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0
BLAST of Csor.00g068090 vs. NCBI nr
Match: KAG6579246.1 (putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 687 bits (1774), Expect = 1.42e-249 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0
BLAST of Csor.00g068090 vs. NCBI nr
Match: XP_022993989.1 (uncharacterized protein LOC111489819 isoform X1 [Cucurbita maxima] >XP_022993990.1 uncharacterized protein LOC111489819 isoform X1 [Cucurbita maxima]) HSP 1 Score: 496 bits (1276), Expect = 6.99e-175 Identity = 258/275 (93.82%), Postives = 261/275 (94.91%), Query Frame = 0
BLAST of Csor.00g068090 vs. NCBI nr
Match: XP_023551194.1 (uncharacterized protein LOC111809081 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 490 bits (1261), Expect = 9.68e-173 Identity = 251/259 (96.91%), Postives = 254/259 (98.07%), Query Frame = 0
BLAST of Csor.00g068090 vs. NCBI nr
Match: XP_008467135.1 (PREDICTED: uncharacterized protein LOC103504564 isoform X1 [Cucumis melo]) HSP 1 Score: 490 bits (1261), Expect = 7.70e-172 Identity = 258/326 (79.14%), Postives = 271/326 (83.13%), Query Frame = 0
BLAST of Csor.00g068090 vs. NCBI nr
Match: XP_008467137.1 (PREDICTED: uncharacterized protein LOC103504564 isoform X2 [Cucumis melo]) HSP 1 Score: 464 bits (1195), Expect = 1.68e-162 Identity = 236/271 (87.08%), Postives = 247/271 (91.14%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy TrEMBL
Match: A0A6J1K1N8 (uncharacterized protein LOC111489819 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489819 PE=4 SV=1) HSP 1 Score: 496 bits (1276), Expect = 3.38e-175 Identity = 258/275 (93.82%), Postives = 261/275 (94.91%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy TrEMBL
Match: A0A1S3CST7 (uncharacterized protein LOC103504564 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504564 PE=4 SV=1) HSP 1 Score: 490 bits (1261), Expect = 3.73e-172 Identity = 258/326 (79.14%), Postives = 271/326 (83.13%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy TrEMBL
Match: A0A1S3CST5 (uncharacterized protein LOC103504564 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504564 PE=4 SV=1) HSP 1 Score: 464 bits (1195), Expect = 8.12e-163 Identity = 236/271 (87.08%), Postives = 247/271 (91.14%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy TrEMBL
Match: A0A5A7TTY1 (DUF3675 domain-containing protein/RINGv domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00260 PE=4 SV=1) HSP 1 Score: 464 bits (1195), Expect = 1.74e-162 Identity = 236/271 (87.08%), Postives = 247/271 (91.14%), Query Frame = 0
BLAST of Csor.00g068090 vs. ExPASy TrEMBL
Match: A0A6J1K1P4 (uncharacterized protein LOC111489819 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489819 PE=4 SV=1) HSP 1 Score: 453 bits (1166), Expect = 6.85e-159 Identity = 232/240 (96.67%), Postives = 234/240 (97.50%), Query Frame = 0
BLAST of Csor.00g068090 vs. TAIR 10
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 242.7 bits (618), Expect = 4.4e-64 Identity = 135/271 (49.82%), Postives = 173/271 (63.84%), Query Frame = 0
BLAST of Csor.00g068090 vs. TAIR 10
Match: AT2G01275.2 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 242.7 bits (618), Expect = 4.4e-64 Identity = 135/271 (49.82%), Postives = 173/271 (63.84%), Query Frame = 0
BLAST of Csor.00g068090 vs. TAIR 10
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 179.9 bits (455), Expect = 3.5e-45 Identity = 108/269 (40.15%), Postives = 156/269 (57.99%), Query Frame = 0
BLAST of Csor.00g068090 vs. TAIR 10
Match: AT1G14260.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 166.8 bits (421), Expect = 3.1e-41 Identity = 92/235 (39.15%), Postives = 135/235 (57.45%), Query Frame = 0
BLAST of Csor.00g068090 vs. TAIR 10
Match: AT1G14260.2 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 166.8 bits (421), Expect = 3.1e-41 Identity = 92/235 (39.15%), Postives = 135/235 (57.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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