Csor.00g067820 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g067820
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 6244086 .. 6245412 (+)
RNA-Seq Expression	Csor.00g067820
Synteny	Csor.00g067820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTAAGAAGGAAGGGAAGGTTAATAAATATCAGGTAAATTGGTTGGTTCGTTCAGGTCAAGAAATATCGTCAAAGGTTACGGAGTAGTACTTCTTTGTTTTCGCTTTATTTACGTACTTTCTTTTGTTCAGGTTCAGGAGAAAGAAGGAAAAGGTGAAGACAGGGACGAAGCAGTGAGACCGACAGGTGATTGAGTTCTGGATCATTAATAGGAGTAAGTAAGTAGCTCGACATTAAAGGATTTCTTTCATTAATTTACTCGACAGGAAAGAAGAATTCTTCTTCTTTAGCTTTACCTCGTTCAAGAGTGAAATCAGGAGAAGGTGAATGAGTAAGTAAGGAGAAGAGGTTAATGAGTTTACTGTTCTAGAATAAAGAACTCTAACGGAACAAGTAGTTCAGGATAATGAGCCCTTCGGTGAGTCTTTCAAGCGAGAGGAAAGAAAAGATAGATTCTTGGCCGTAAGTAAAGGGATAGGCCAGGCAGGACAGAAGATAAGATGCTTTAACCTATTTACCGAGTTCAAGAAAAGAGATAGTTCAACCCGAGTAAAAGAAGGAATCGGATCATTCATCCTTCTTACAGGAGGGAGAGAAAGAAAGAATCAGAGAATATGTGAGACCTAGAAGTTCAGGAGGTAAGATCAGCTGTGAGACAAGGGGGTTTCTTATCTTAGGTTAGAGTGAAGGGGAAGAGAAAGAAAAGAAAGAAAAGAGACCGGAAAGTCCAGTCTTTGAAGGGAGAGTCCAAATCAGAAGACAGTGAAAGAAGGTGATTGAGTTTACCGAGTGAAAGAAGGAAAAGGTTGGTTTTCGGGTTCTTCTTCTCATACAGCCAACCGCTTGACTTACCTTCCTTGTGAAAGAGTGAAATCAGGAGAAGGAATCTTTCTTTCGTCTCTCTCCCTTCTTTCTCTATCGGTTACGGTTCATCAGGTGAATGAGCAAATCCTTCTTTTGAAGTGAAATCAGGTTCAGGAGAAAGAATCTTGTCTGTCTTGCTTGAGTCCGGAAATTCTCTTTTCTTTACTATCCTGTAAAGGTGATTGAGCTTAGCTTCTCTTTCTTTCTCGGCAGGTTCCGGTTCAGGGCAAGGAGTTCAAGAAGGGTCATCAGTAATAGTACAGGAGTTTACTGTAATAACAAAGAAGAAAGGGAATCTCGATTCAATAGCTCAGGTCATATTGGTTCAGCGGAGTTTAGTTCGTAAACAACTCTTGAGTTTGACATTGAAGGGAAAGAAAAGAGAAGAGAAGAGACCGAGCCGTTGTTTGAGTTCAATCTGGTGGAGGAGGAGAAAGAATCAATCAATCAATAGGTGA

mRNA sequence

ATGAGAGTTCAGGAGAAAGAAGGAAAAGGTGAAGACAGGGACGAAGCAGTGAGACCGACAGGAAAGAAGAATTCTTCTTCTTTAGCTTTACCTCGTTCAAGAGTGAAATCAGGAGAAGGTTCCGGTTCAGGGCAAGGAGTTCAAGAAGGGTCATCAGTAATAGTACAGGAGTTTACTGTAATAACAAAGAAGAAAGGGAATCTCGATTCAATAGCTCAGGTCATATTGGTTCAGCGGAGTTTAGTTCGTAAACAACTCTTGAGTTTGACATTGAAGGGAAAGAAAAGAGAAGAGAAGAGACCGAGCCGTTGTTTGAGTTCAATCTGGTGGAGGAGGAGAAAGAATCAATCAATCAATAGGTGA

Coding sequence (CDS)

ATGAGAGTTCAGGAGAAAGAAGGAAAAGGTGAAGACAGGGACGAAGCAGTGAGACCGACAGGAAAGAAGAATTCTTCTTCTTTAGCTTTACCTCGTTCAAGAGTGAAATCAGGAGAAGGTTCCGGTTCAGGGCAAGGAGTTCAAGAAGGGTCATCAGTAATAGTACAGGAGTTTACTGTAATAACAAAGAAGAAAGGGAATCTCGATTCAATAGCTCAGGTCATATTGGTTCAGCGGAGTTTAGTTCGTAAACAACTCTTGAGTTTGACATTGAAGGGAAAGAAAAGAGAAGAGAAGAGACCGAGCCGTTGTTTGAGTTCAATCTGGTGGAGGAGGAGAAAGAATCAATCAATCAATAGGTGA

Protein sequence

MRVQEKEGKGEDRDEAVRPTGKKNSSSLALPRSRVKSGEGSGSGQGVQEGSSVIVQEFTVITKKKGNLDSIAQVILVQRSLVRKQLLSLTLKGKKREEKRPSRCLSSIWWRRRKNQSINR

Homology

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BLAST of Csor.00g067820 vs. NCBI nr
Match: KAG6585895.1 (hypothetical protein SDJN03_18628, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (562), Expect = 3.61e-72
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MRVQEKEGKGEDRDEAVRPTGKKNSSSLALPRSRVKSGEGSGSGQGVQEGSSVIVQEFTV 60
           MRVQEKEGKGEDRDEAVRPTGKKNSSSLALPRSRVKSGEGSGSGQGVQEGSSVIVQEFTV
Sbjct: 1   MRVQEKEGKGEDRDEAVRPTGKKNSSSLALPRSRVKSGEGSGSGQGVQEGSSVIVQEFTV 60

Query: 61  ITKKKGNLDSIAQVILVQRSLVRKQLLSLTLKGKKREEKRPSRCLSSIWWRRRKNQSINR 120
           ITKKKGNLDSIAQVILVQRSLVRKQLLSLTLKGKKREEKRPSRCLSSIWWRRRKNQSINR
Sbjct: 61  ITKKKGNLDSIAQVILVQRSLVRKQLLSLTLKGKKREEKRPSRCLSSIWWRRRKNQSINR 120

The following BLAST results are available for this feature:

BLAST of Csor.00g067820 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g067820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585895.1	3.61e-72	100.00	hypothetical protein SDJN03_18628, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g067820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g067820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g067820.m01	Csor.00g067820.m01	mRNA