Csor.00g067660 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g067660
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 27
LocationCsor_Chr15: 6427641 .. 6427946 (-)
RNA-Seq ExpressionCsor.00g067660
SyntenyCsor.00g067660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTTTTCCCGGCAATGAGCGGCGGAGGCGCCACTCCACCTCGACGGCGGCGGCGTTTTCTCTCTTCTTTCTTCCTACTGATTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGACCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGAAGGAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAG

mRNA sequence

ATGGTGGTTTTCCCGGCAATGAGCGGCGGAGGCGCCACTCCACCTCGACGGCGGCGGCGTTTTCTCTCTTCTTTCTTCCTACTGATTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGACCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGAAGGAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAG

Coding sequence (CDS)

ATGGTGGTTTTCCCGGCAATGAGCGGCGGAGGCGCCACTCCACCTCGACGGCGGCGGCGTTTTCTCTCTTCTTTCTTCCTACTGATTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGACCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGAAGGAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAG

Protein sequence

MVVFPAMSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Homology
BLAST of Csor.00g067660 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.4e-04
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0

Query: 27  LLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNG------RSF 86
           +L+ ++  +FC   +      R FP      ++ + G   +E L++ YF         SF
Sbjct: 19  ILLSYMLHLFC--VYSRVGAIRIFP------ETPASGKRQEEDLMKKYFGAGKFPPVDSF 78

Query: 87  GSRGFQEKKRTVPSCPDPLHN 102
             +G  E KR VPSCPDPLHN
Sbjct: 79  VGKGISESKRIVPSCPDPLHN 91

BLAST of Csor.00g067660 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (542), Expect = 1.00e-69
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MVVFPAMSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSV 60
           MVVFPAMSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSV
Sbjct: 1   MVVFPAMSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSV 60

Query: 61  SGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101
           SGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Sbjct: 61  SGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

BLAST of Csor.00g067660 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (512), Expect = 3.14e-65
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 7   MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 66
           MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS
Sbjct: 1   MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 60

Query: 67  KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101
           KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Sbjct: 61  KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

BLAST of Csor.00g067660 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (258), Expect = 1.35e-26
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 10  GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAV-ARPFPGNQKPEQS-VSGGAGSK 69
           GG TP R+RR FLS+  ++  FIWVVFCH   Q  AV AR FP N  PE++ V GG GSK
Sbjct: 3   GGVTPTRQRR-FLSTLLVMALFIWVVFCH---QPGAVSARLFPENLIPEETHVGGGGGSK 62

Query: 70  EKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101
           EKLLR YFNG     RGF++ KRTVPSCPDPLHN
Sbjct: 63  EKLLRKYFNGM----RGFEDNKRTVPSCPDPLHN 88

BLAST of Csor.00g067660 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 4.80e-24
Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 7   MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 66
           M   GATP RRRR  LS FF+++FFIWVV  +    A+A+ARP   ++ P+    G  GS
Sbjct: 1   MYDSGATPSRRRR-LLSYFFIILFFIWVVVGNQA--ASAMARPLEESENPDM---GAVGS 60

Query: 67  KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101
           KEK    YFNGRS GSR F+E KRTVPSCPDPLHN
Sbjct: 61  KEK----YFNGRSLGSREFEENKRTVPSCPDPLHN 85

BLAST of Csor.00g067660 vs. NCBI nr
Match: KAB1221059.1 (CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra])

HSP 1 Score: 70.5 bits (171), Expect = 2.45e-13
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 32  IWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS-----KEKLLRTYFNGRSFG----S 91
           IWV  C +  QA A+ R  PGN + + +  G  GS     KE+LLR YFNGR+FG    +
Sbjct: 16  IWVC-CEYSCQAGAI-RIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGFNRTA 75

Query: 92  RGFQEKKRTVPSCPDPLHN 101
            GF+E KR VPSCPDPLHN
Sbjct: 76  NGFEESKRRVPSCPDPLHN 92

BLAST of Csor.00g067660 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.32e-24
Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 7   MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 66
           M   GATP RRRR  LS FF+++FFIWVV  +    A+A+ARP   ++ P+    G  GS
Sbjct: 1   MYDSGATPSRRRR-LLSYFFIILFFIWVVVGNQA--ASAMARPLEESENPDM---GAVGS 60

Query: 67  KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101
           KEK    YFNGRS GSR F+E KRTVPSCPDPLHN
Sbjct: 61  KEK----YFNGRSLGSREFEENKRTVPSCPDPLHN 85

BLAST of Csor.00g067660 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.19e-13
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 32  IWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS-----KEKLLRTYFNGRSFG----S 91
           IWV  C +  QA A+ R  PGN + + +  G  GS     KE+LLR YFNGR+FG    +
Sbjct: 16  IWVC-CEYSCQAGAI-RIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGFNRTA 75

Query: 92  RGFQEKKRTVPSCPDPLHN 101
            GF+E KR VPSCPDPLHN
Sbjct: 76  NGFEESKRRVPSCPDPLHN 92

BLAST of Csor.00g067660 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.50e-11
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 23  SSFFLLIFFIWV----VFCHHRHQATAVARPFPGNQKP---EQSVSGGA--GSKEKLLRT 82
           S+F +LI  +WV    V CH + +A+ +  P P    P   ++S+SG     +K  LL+ 
Sbjct: 16  SAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQK 75

Query: 83  YFNGRSFG----SRGFQEKKRTVPSCPDPLHN 101
           YFNGR+F       GF++ KR +PSCPDPLHN
Sbjct: 76  YFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

BLAST of Csor.00g067660 vs. ExPASy TrEMBL
Match: A0A2N9G6I6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.03e-09
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 29  IFFIWVVFCHHRHQATAVARPFPGNQKP----EQSVSGGAGSKEKLLRTYFNGRSFG--- 88
           +F IW+  C +  QA A+ R FPGN       E+S+     SKE+L   YF+GR+F    
Sbjct: 13  VFQIWLC-CEYSCQARAI-RIFPGNGVAKFIKEKSIDKKI-SKEELFHKYFSGRTFSLNN 72

Query: 89  ---SRGFQEKKRTVPSCPDPLHN 101
                GF E KR VPSCPDPLHN
Sbjct: 73  KTDDNGFDESKRRVPSCPDPLHN 92

BLAST of Csor.00g067660 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.73e-09
Identity = 40/84 (47.62%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 27  LLIFF--IWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS---KEKLLRTYFNGRSFG 86
           L+IFF  IWV  C  R  A  +    PGN   + + S G      K  L + YFNGRSF 
Sbjct: 20  LIIFFLQIWVC-CDCRAGAIRI---LPGNGMRKMTESQGMKDNKGKGDLFQKYFNGRSFS 79

Query: 87  ----SRGFQEKKRTVPSCPDPLHN 101
                RGF+E KR VPSCPDPLHN
Sbjct: 80  FNKTDRGFEESKRRVPSCPDPLHN 99

BLAST of Csor.00g067660 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-05
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0

Query: 27  LLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNG------RSF 86
           +L+ ++  +FC   +      R FP      ++ + G   +E L++ YF         SF
Sbjct: 19  ILLSYMLHLFC--VYSRVGAIRIFP------ETPASGKRQEEDLMKKYFGAGKFPPVDSF 78

Query: 87  GSRGFQEKKRTVPSCPDPLHN 102
             +G  E KR VPSCPDPLHN
Sbjct: 79  VGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LUA17.4e-0433.33CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P... [more]
Match NameE-valueIdentityDescription
KAG6579278.11.00e-69100.00CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7016789.13.14e-65100.00hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601785.11.35e-2662.77CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAA0063931.14.80e-2457.89putative Clavata3/esr-related 43 [Cucumis melo var. makuwa][more]
KAB1221059.12.45e-1351.90CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra][more]
Match NameE-valueIdentityDescription
A0A5A7VDX32.32e-2457.89Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A6A1W7051.19e-1351.90CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01... [more]
A0A0A0KR664.50e-1141.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1[more]
A0A2N9G6I64.03e-0945.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1[more]
A0A061E6F86.73e-0947.62Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G25905.15.2e-0533.33CLAVATA3/ESR-RELATED 27 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..101
NoneNo IPR availablePANTHERPTHR37184:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 27coord: 15..101
IPR040274CLAVATA3/ESR (CLE)-related protein 27/43PANTHERPTHR37184CLAVATA3/ESR (CLE)-RELATED PROTEIN 27coord: 15..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g067660.m01Csor.00g067660.m01mRNA