Csor.00g067340 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g067340
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr02: 5477275 .. 5478426 (-)
RNA-Seq Expression	Csor.00g067340
Synteny	Csor.00g067340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATGTGGACCTGGGGATTGAGGGGCAGCCTATAGAAGGAACTGCTCCAGCAGTGGCGGTTTCGGAGCCTGCTTCTCAGTCGGCATCTAGAGATCAGCCGACTGTTGTTATTACTCTGGAGGCCTTGCAATCGCTGATTCAAAGTTAAGTGAATCAAGCGGTGCAGAGCCGAGTGGATTAGGTGGTACAGATAGCTTTTGCTGGTTTTGGAAGGTGGGCGGCTCCAACAGCACCCGTACCTAGCCATGTGACTCTAGTGTCTGAAGCACAAGTAGGTGTTCAGGTAGCGATACCTCCAACAATTTCGAAGGAGCTACCTGGTACAGCGATAGTGACAGAGGCACCACTGCGGGTAGTAACCTATGGGCGATGATGTATGACGAAGGAAAGTGAATACATATGAGATTTTATGAAACTTATCCCGCCAACTCTTGGAGGAAGGGGGACTGATCCTTAGGCAGCTGAATGGTGGCTGGAATATACTGAAACAAAATTACATTCTTCAACTGCCCAGGGAGTCATAAGATGCTGTGCGCCATGTATATGTTGGAGGGACCAGCCCATTTTTGGTGAAACCAAAGAAGCCAAAGATGGAGGTCAGTGGAGTCCCAATTTCATGGGCGGCATTTAAACATGAATTTTGTGAGAAATACTATCTTGCTCTAGTAAAATTATGAAACTGAAAGGTCTTTATGCAGCTGGAGCAGGGTAATATGTCAATAGAGGAGTATGAAGTGGAGTTCACACGATTATCCAGGTTTGTTCCTCATATGGATGCTACTGAGAAAGAAAAGACAGATCTCTTTATCCTTGGTTTGAGGACAGAGATGCAGGGATTAGTGTCTGCCCATGCTTTTTAAAATTTGTTACTGCTTATAATGCTACTGTGGAATTAGATGCTGCCACCTTGGAGAGTAATCAGGGTTCCAACGGCCAGGAACGACCAAGTAGTAAGCAAAAATTCACTTAGATATTCTCAAGTTTGCGATAGCAGGCAGTACTACGACAAGTAGATCATCGGTCTTCTTTAGGTGATAGGAAGGCAATATGTGAAAAATGTGGATTGATGTATGAGGGACCCTGTACTGCTGTAAACAAGACATGTTATAATTGTGGTAAGAGCGACCATCTTGCCAGAGTGTCGTAA

mRNA sequence

ATGTCCAATGTGGACCTGGGGATTGAGGGGCAGCCTATAGAAGGAACTGCTCCAGCAGTGGCGGTTTCGGAGCCTGCTTCTCAGTCGGCATCTAGAGATCAGCCGACTGTTGTTATTACTCTGGAGGCCTTGCAATCGCTGATTCAAACACCCGTACCTAGCCATGTGACTCTAGTGTCTGAAGCACAAGTAGGTGTTCAGGTAGCGATACCTCCAACAATTTCGAAGGAGCTACCTGGTACAGCGATAGTGACAGAGGCACCACTGCGGGCAGTACTACGACAAGTAGATCATCGGTCTTCTTTAGGTGATAGGAAGGCAATATGTGAAAAATGTGGATTGATGTATGAGGGACCCTGTACTGCTGTAAACAAGACATGTTATAATTGTGGTAAGAGCGACCATCTTGCCAGAGTGTCGTAA

Coding sequence (CDS)

ATGTCCAATGTGGACCTGGGGATTGAGGGGCAGCCTATAGAAGGAACTGCTCCAGCAGTGGCGGTTTCGGAGCCTGCTTCTCAGTCGGCATCTAGAGATCAGCCGACTGTTGTTATTACTCTGGAGGCCTTGCAATCGCTGATTCAAACACCCGTACCTAGCCATGTGACTCTAGTGTCTGAAGCACAAGTAGGTGTTCAGGTAGCGATACCTCCAACAATTTCGAAGGAGCTACCTGGTACAGCGATAGTGACAGAGGCACCACTGCGGGCAGTACTACGACAAGTAGATCATCGGTCTTCTTTAGGTGATAGGAAGGCAATATGTGAAAAATGTGGATTGATGTATGAGGGACCCTGTACTGCTGTAAACAAGACATGTTATAATTGTGGTAAGAGCGACCATCTTGCCAGAGTGTCGTAA

Protein sequence

MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVSEAQVGVQVAIPPTISKELPGTAIVTEAPLRAVLRQVDHRSSLGDRKAICEKCGLMYEGPCTAVNKTCYNCGKSDHLARVS

Homology

[Close]

BLAST of Csor.00g067340 vs. NCBI nr
Match: KAG6605535.1 (hypothetical protein SDJN03_02852, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270 bits (690), Expect = 4.80e-91
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60
           MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS
Sbjct: 1   MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60

Query: 61  EAQVGVQVAIPPTISKELPGTAIVTEAPLRAVLRQVDHRSSLGDRKAICEKCGLMYEGPC 120
           EAQVGVQVAIPPTISKELPGTAIVTEAPLRAVLRQVDHRSSLGDRKAICEKCGLMYEGPC
Sbjct: 61  EAQVGVQVAIPPTISKELPGTAIVTEAPLRAVLRQVDHRSSLGDRKAICEKCGLMYEGPC 120

Query: 121 TAVNKTCYNCGKSDHLARVS 140
           TAVNKTCYNCGKSDHLARVS
Sbjct: 121 TAVNKTCYNCGKSDHLARVS 140

[Close]

BLAST of Csor.00g067340 vs. NCBI nr
Match: KAG6596973.1 (hypothetical protein SDJN03_10153, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (624), Expect = 1.63e-80
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60
           MSNVDLGIEGQPIEGTAPAVAV EP SQSASRDQPTVVITLEALQSLIQTP+PSHVTLV 
Sbjct: 1   MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVVITLEALQSLIQTPIPSHVTLVP 60

Query: 61  EAQVGVQVAIPPTISKELPGTAIVTEAPLRAVLRQVDHRSSLGDRKAICEKCGLMYEGPC 120
           EAQVGVQVAIPPTISKELP TA+VTEAPLRAV RQVD RSSLGDRKA+C KCGLM  GPC
Sbjct: 61  EAQVGVQVAIPPTISKELPSTAVVTEAPLRAVQRQVDRRSSLGDRKAVCGKCGLMQGGPC 120

Query: 121 TAVNKTCYNCGKSDHLARV 139
           TAVNKTCYNCGKSDHLA+V
Sbjct: 121 TAVNKTCYNCGKSDHLAKV 139

[Close]

BLAST of Csor.00g067340 vs. NCBI nr
Match: KAG6605534.1 (hypothetical protein SDJN03_02851, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (403), Expect = 5.37e-48
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60
          MSNVDLGIEG+PIEGTAPAVAV EPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS
Sbjct: 1  MSNVDLGIEGRPIEGTAPAVAVPEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60

Query: 61 EAQVGVQVAIPPTISKELPGTAIVTEAPLR 90
          EAQVGVQVA PPTISKELPGTA+VTEAPLR
Sbjct: 61 EAQVGVQVATPPTISKELPGTAVVTEAPLR 90

[Close]

BLAST of Csor.00g067340 vs. NCBI nr
Match: KAG6588680.1 (hypothetical protein SDJN03_17245, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (402), Expect = 9.16e-48
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60
          MSNVDLGIEGQPIEGTAPAVAV EP SQSASRDQPTV+ITLEALQSLIQTPVPSHVTLV 
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP 60

Query: 61 EAQVGVQVAIPPTISKELPGTAIVTEAPLRAV 92
          EAQVGVQVAIPPTISKELPGT +VTEAPLR V
Sbjct: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVV 92

[Close]

BLAST of Csor.00g067340 vs. NCBI nr
Match: KAG6573685.1 (hypothetical protein SDJN03_27572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (385), Expect = 3.55e-45
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPTVVITLEALQSLIQTPVPSHVTLVS 60
          MSNVDLGIEGQPIEGTAPAVA+ E  SQSASRDQPTVVITLEALQSLIQT VPSHVTLV 
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAIPETISQSASRDQPTVVITLEALQSLIQTSVPSHVTLVP 60

Query: 61 EAQVGVQVAIPPTISKELPGTAIVTEAPLRAV 92
          EAQVGVQVAIPPTISKELPGT +VTEAPLR V
Sbjct: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVV 92

[Close]

BLAST of Csor.00g067340 vs. ExPASy TrEMBL
Match: A0A6J1EMJ0 (uncharacterized protein LOC111434816 OS=Cucurbita moschata OX=3662 GN=LOC111434816 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.16e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MSNVDLGIEGQPIEGTAPAVAVSEPASQSASRDQPT 36
          MSNVDLGIEGQPIEGTAPAVA+ E  SQSASRDQPT
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAIPETTSQSASRDQPT 36

[Close]

BLAST of Csor.00g067340 vs. ExPASy TrEMBL
Match: A0A6J1HHR1 (uncharacterized protein LOC111463090 OS=Cucurbita moschata OX=3662 GN=LOC111463090 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.96e-08
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 83  IVTEAPLRAVLRQVDHRSSLGDRKAICEKCGLMYEGPCTAVNKTCYNCGKSDHLARV 139
           I T +  + V ++VD R   G+ +A C KCGL + G C A +K CYNCGK+ HLARV
Sbjct: 128 ISTGSQQQTVPQRVDRRLYSGEGRAGCSKCGLTHAGSCNATDKICYNCGKTGHLARV 184

[Close]

BLAST of Csor.00g067340 vs. ExPASy TrEMBL
Match: A0A6J1EZK0 (uncharacterized protein LOC111440728 OS=Cucurbita moschata OX=3662 GN=LOC111440728 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.27e-07
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 90  RAVLRQVDHRSSLGDRKAICEKCGLMYEGPCTAVNKTCYNCGKSDHLARV 139
           + V ++VD R   G+ +A C KCGL + G C A +K CYNCGK+ HLARV
Sbjct: 212 QTVPQRVDRRPYSGEGRAGCSKCGLTHAGSCNAADKICYNCGKTGHLARV 261

The following BLAST results are available for this feature:

BLAST of Csor.00g067340 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g067340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605535.1	4.80e-91	100.00	hypothetical protein SDJN03_02852, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596973.1	1.63e-80	90.65	hypothetical protein SDJN03_10153, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605534.1	5.37e-48	95.56	hypothetical protein SDJN03_02851, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588680.1	9.16e-48	92.39	hypothetical protein SDJN03_17245, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6573685.1	3.55e-45	90.22	hypothetical protein SDJN03_27572, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g067340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMJ0	4.16e-09	88.89	uncharacterized protein LOC111434816 OS=Cucurbita moschata OX=3662 GN=LOC1114348...	[more]
A0A6J1HHR1	8.96e-08	49.12	uncharacterized protein LOC111463090 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A6J1EZK0	1.27e-07	52.00	uncharacterized protein LOC111440728 OS=Cucurbita moschata OX=3662 GN=LOC1114407...	[more]

BLAST of Csor.00g067340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 125..138 e-value: 2.8E-4 score: 20.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g067340.m01	Csor.00g067340.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding