Csor.00g066830 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTTGCACCCTCTTCGACGACTTATTCCTTAAACCTTCTGTTTTTCTTTACAACAAGTTCATTCAAACATTTTATCTTCCATTTGTCACCACACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTGCTCTCCCAATCACCATTCATCACCTTTCTCTTTCCGCATGCGCTTCCTTTTTAAAATGCTTACCCCCACGTCAGATGCTTCATTCACATTTATTTAAGTCCGGGATTTGCCTCTTCTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTCTTTTCGATGTATTTGCGTTGACGGCGTTGCTTAGACATGTATGGGAAATTGGGGATTTTTGAAGTCTGCACGCCAACCCTTGGGGGTTTTGGGGAAAAAATGAAAAATGGGGGCCCCCCCCCCCCCCCTTTCCGAGATTATACCCACTTGGAATTCGATGGATTGCAGGTTTTATGCGAGGGTCCGGCGTAAATGGGGGCAGCATTGGAATTGTTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTGGATATCTGGATATGCGCAGAATGGGAAGAGTATGGCGAAGGCCTTGGAGATGTTTTCTGAGGTTGGAAAACGAGAAAGGCACTTAAACCCGAATGAGGTGACCCTCGCCAGTGTTCTTCCTGCCTGTGCCCATATTGGGGCGTTGGATATGGGGAAGAGGATTTAA ATGCGTTGCACCCTCTTCGACGACTTATTCCTTAAACCTTCTGTTTTTCTTTACAACAAGTTCATTCAAACATTTTATCTTCCATTTGTCACCACACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTTTATGCGAGGGTCCGGCGTAAATGGGGGCAGCATTGGAATTGTTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTGGATATCTGGATATGCGCAGAATGGGAAGAGTATGGCGAAGGCCTTGGAGATGTTTTCTGAGGTTGGAAAACGAGAAAGGCACTTAAACCCGAATGAGGTGACCCTCGCCAGTGTTCTTCCTGCCTGTGCCCATATTGGGGCGTTGGATATGGGGAAGAGGATTTAA ATGCGTTGCACCCTCTTCGACGACTTATTCCTTAAACCTTCTGTTTTTCTTTACAACAAGTTCATTCAAACATTTTATCTTCCATTTGTCACCACACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTTTATGCGAGGGTCCGGCGTAAATGGGGGCAGCATTGGAATTGTTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTGGATATCTGGATATGCGCAGAATGGGAAGAGTATGGCGAAGGCCTTGGAGATGTTTTCTGAGGTTGGAAAACGAGAAAGGCACTTAAACCCGAATGAGGTGACCCTCGCCAGTGTTCTTCCTGCCTGTGCCCATATTGGGGCGTTGGATATGGGGAAGAGGATTTAA MRCTLFDDLFLKPSVFLYNKFIQTFYLPFVTTPMLVALLSNVPPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHIGALDMGKRI Homology
BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9FNN7 (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E20 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12 Identity = 33/69 (47.83%), Postives = 54/69 (78.26%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.5e-12 Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11 Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10 Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of Csor.00g066830 vs. NCBI nr
Match: KAG6583627.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 271 bits (694), Expect = 5.16e-92 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
BLAST of Csor.00g066830 vs. NCBI nr
Match: XP_022924285.1 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 [Cucurbita moschata]) HSP 1 Score: 119 bits (297), Expect = 1.25e-28 Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 0
BLAST of Csor.00g066830 vs. NCBI nr
Match: XP_022979296.1 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 [Cucurbita maxima]) HSP 1 Score: 113 bits (283), Expect = 1.23e-26 Identity = 79/152 (51.97%), Postives = 89/152 (58.55%), Query Frame = 0
BLAST of Csor.00g066830 vs. NCBI nr
Match: KAE8637264.1 (hypothetical protein CSA_017680 [Cucumis sativus]) HSP 1 Score: 107 bits (268), Expect = 1.69e-24 Identity = 74/154 (48.05%), Postives = 87/154 (56.49%), Query Frame = 0
BLAST of Csor.00g066830 vs. NCBI nr
Match: XP_031745381.1 (pentatricopeptide repeat-containing protein At5g08510-like [Cucumis sativus]) HSP 1 Score: 106 bits (264), Expect = 5.96e-24 Identity = 74/156 (47.44%), Postives = 89/156 (57.05%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1EED6 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431814 PE=4 SV=1) HSP 1 Score: 119 bits (297), Expect = 6.04e-29 Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1IQD7 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479063 PE=4 SV=1) HSP 1 Score: 113 bits (283), Expect = 5.97e-27 Identity = 79/152 (51.97%), Postives = 89/152 (58.55%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1E8Q2 (pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431814 PE=4 SV=1) HSP 1 Score: 104 bits (259), Expect = 2.02e-23 Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1ISU4 (pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479063 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.72e-21 Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1D160 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016399 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 6.09e-21 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 0
BLAST of Csor.00g066830 vs. TAIR 10
Match: AT5G08510.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13 Identity = 33/69 (47.83%), Postives = 54/69 (78.26%), Query Frame = 0
BLAST of Csor.00g066830 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13 Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0
BLAST of Csor.00g066830 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12 Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0
BLAST of Csor.00g066830 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11 Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Csor.00g066830 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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