Csor.00g066830 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g066830
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCsor_Chr13: 3960526 .. 3961241 (-)
RNA-Seq ExpressionCsor.00g066830
SyntenyCsor.00g066830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTGCACCCTCTTCGACGACTTATTCCTTAAACCTTCTGTTTTTCTTTACAACAAGTTCATTCAAACATTTTATCTTCCATTTGTCACCACACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTGCTCTCCCAATCACCATTCATCACCTTTCTCTTTCCGCATGCGCTTCCTTTTTAAAATGCTTACCCCCACGTCAGATGCTTCATTCACATTTATTTAAGTCCGGGATTTGCCTCTTCTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTCTTTTCGATGTATTTGCGTTGACGGCGTTGCTTAGACATGTATGGGAAATTGGGGATTTTTGAAGTCTGCACGCCAACCCTTGGGGGTTTTGGGGAAAAAATGAAAAATGGGGGCCCCCCCCCCCCCCCTTTCCGAGATTATACCCACTTGGAATTCGATGGATTGCAGGTTTTATGCGAGGGTCCGGCGTAAATGGGGGCAGCATTGGAATTGTTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTGGATATCTGGATATGCGCAGAATGGGAAGAGTATGGCGAAGGCCTTGGAGATGTTTTCTGAGGTTGGAAAACGAGAAAGGCACTTAAACCCGAATGAGGTGACCCTCGCCAGTGTTCTTCCTGCCTGTGCCCATATTGGGGCGTTGGATATGGGGAAGAGGATTTAA

mRNA sequence

ATGCGTTGCACCCTCTTCGACGACTTATTCCTTAAACCTTCTGTTTTTCTTTACAACAAGTTCATTCAAACATTTTATCTTCCATTTGTCACCACACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTTTATGCGAGGGTCCGGCGTAAATGGGGGCAGCATTGGAATTGTTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTGGATATCTGGATATGCGCAGAATGGGAAGAGTATGGCGAAGGCCTTGGAGATGTTTTCTGAGGTTGGAAAACGAGAAAGGCACTTAAACCCGAATGAGGTGACCCTCGCCAGTGTTCTTCCTGCCTGTGCCCATATTGGGGCGTTGGATATGGGGAAGAGGATTTAA

Coding sequence (CDS)

ATGCGTTGCACCCTCTTCGACGACTTATTCCTTAAACCTTCTGTTTTTCTTTACAACAAGTTCATTCAAACATTTTATCTTCCATTTGTCACCACACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTTTATGCGAGGGTCCGGCGTAAATGGGGGCAGCATTGGAATTGTTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTGGATATCTGGATATGCGCAGAATGGGAAGAGTATGGCGAAGGCCTTGGAGATGTTTTCTGAGGTTGGAAAACGAGAAAGGCACTTAAACCCGAATGAGGTGACCCTCGCCAGTGTTCTTCCTGCCTGTGCCCATATTGGGGCGTTGGATATGGGGAAGAGGATTTAA

Protein sequence

MRCTLFDDLFLKPSVFLYNKFIQTFYLPFVTTPMLVALLSNVPPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHIGALDMGKRI
Homology
BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9FNN7 (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 33/69 (47.83%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FD MP +NV SWT  ISG++QNG + ++AL+MF  + ++++ + PN +T+ SVLPACA++
Sbjct: 171 FDSMPRKNVTSWTTVISGFSQNG-NYSEALKMFLCM-EKDKSVKPNHITVVSVLPACANL 230

Query: 121 GALDMGKRI 130
           G L++G+R+
Sbjct: 231 GELEIGRRL 237

BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-12
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FD+MP+RNV++WTA I+GY Q+ +   K + +F E+ K +  + PNE TL+SVL ACAH+
Sbjct: 263 FDEMPSRNVVTWTALIAGYVQS-RCFDKGMLVFEEMLKSD--VAPNEKTLSSVLSACAHV 322

Query: 121 GALDMGKRI 130
           GAL  G+R+
Sbjct: 323 GALHRGRRV 328

BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           F  MP RNV+SW+A I+ YA+NGK+  +AL  F E+ +  +  +PN VT+ SVL ACA +
Sbjct: 240 FGGMPVRNVVSWSAMIACYAKNGKAF-EALRTFREMMRETKDSSPNSVTMVSVLQACASL 299

Query: 121 GALDMGKRI 130
            AL+ GK I
Sbjct: 300 AALEQGKLI 307

BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEV---GKRERHLNPNEVTLASVLPAC 120
           FD+MP RNVISW+  I+GY   GK   +AL++F E+      E  + PNE T+++VL AC
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGK-YKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSAC 210

Query: 121 AHIGALDMGK 128
             +GAL+ GK
Sbjct: 211 GRLGALEQGK 219

BLAST of Csor.00g066830 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 56  QHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLP 115
           Q  N FD+MP RN +SW + ISG+ +NG+    AL+MF E+  +E+ + P+  T+ S+L 
Sbjct: 210 QAQNLFDEMPQRNGVSWNSMISGFVRNGR-FKDALDMFREM--QEKDVKPDGFTMVSLLN 269

Query: 116 ACAHIGALDMGKRI 130
           ACA++GA + G+ I
Sbjct: 270 ACAYLGASEQGRWI 280

BLAST of Csor.00g066830 vs. NCBI nr
Match: KAG6583627.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271 bits (694), Expect = 5.16e-92
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MRCTLFDDLFLKPSVFLYNKFIQTFYLPFVTTPMLVALLSNVPPRFYARVRRKWGQHWNC 60
           MRCTLFDDLFLKPSVFLYNKFIQTFYLPFVTTPMLVALLSNVPPRFYARVRRKWGQHWNC
Sbjct: 1   MRCTLFDDLFLKPSVFLYNKFIQTFYLPFVTTPMLVALLSNVPPRFYARVRRKWGQHWNC 60

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI
Sbjct: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120

Query: 121 GALDMGKRI 129
           GALDMGKRI
Sbjct: 121 GALDMGKRI 129

BLAST of Csor.00g066830 vs. NCBI nr
Match: XP_022924285.1 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 [Cucurbita moschata])

HSP 1 Score: 119 bits (297), Expect = 1.25e-28
Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 0

Query: 3   CTLFDDLFLKPSVFLYNKFIQTF---------YLPFVTT----------------PMLVA 62
           CTLFD L  KPSVFLYNKFIQTF         +L +                   P   +
Sbjct: 36  CTLFD-LIPKPSVFLYNKFIQTFSSIGHHHRCWLLYYQMCLQGCSPNHHSFTFLFPACAS 95

Query: 63  LLSNVPPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVG 122
            L+  P   YAR     G     FDKMPTRNVISWTA ISGYAQNGK  AKALEMF  + 
Sbjct: 96  FLNAYPG--YARSGYM-GAALELFDKMPTRNVISWTALISGYAQNGK-YAKALEMFLRL- 155

Query: 123 KRERHLNPNEVTLASVLPACAHIGALDMGKRI 129
           + E+   PNEVT+ASVLPACAH+GALD+GKRI
Sbjct: 156 ENEKGTKPNEVTIASVLPACAHLGALDIGKRI 181

BLAST of Csor.00g066830 vs. NCBI nr
Match: XP_022979296.1 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 [Cucurbita maxima])

HSP 1 Score: 113 bits (283), Expect = 1.23e-26
Identity = 79/152 (51.97%), Postives = 89/152 (58.55%), Query Frame = 0

Query: 3   CTLFDDLFLKPSVFLYNKFIQTF---------YLPFVTT----------------PMLVA 62
           CTLFD L  KPSVFLYNKFIQTF         +L +                   P   +
Sbjct: 36  CTLFD-LIPKPSVFLYNKFIQTFSSIGHPHRCWLLYYQMCLQGCSPNHHSFTFLFPACAS 95

Query: 63  LLSNVPPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVG 122
            L+  P   YAR     G     FDKMP RNVISWTA ISGYAQNGK  AKALEMF  + 
Sbjct: 96  FLNAYPG--YARSGYM-GAALELFDKMPIRNVISWTALISGYAQNGK-YAKALEMFLRL- 155

Query: 123 KRERHLNPNEVTLASVLPACAHIGALDMGKRI 129
           + E+   PNEVT+ASVLPACA +GALD+GKRI
Sbjct: 156 ENEKGTKPNEVTIASVLPACAQLGALDIGKRI 181

BLAST of Csor.00g066830 vs. NCBI nr
Match: KAE8637264.1 (hypothetical protein CSA_017680 [Cucumis sativus])

HSP 1 Score: 107 bits (268), Expect = 1.69e-24
Identity = 74/154 (48.05%), Postives = 87/154 (56.49%), Query Frame = 0

Query: 3   CTLFDDLFLKPSVFLYNKFIQTF--------------------------YLPFVTTPMLV 62
           CTLFD +  KPSV+LYNKFIQTF                          + PF       
Sbjct: 36  CTLFDQI-PKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSRISIHSPF---SFAC 95

Query: 63  ALLSNV-PPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSE 122
           A L NV P +      R        F+KMP RNVISWTA ISGYAQNGK  AKALEMF  
Sbjct: 96  ASLFNVYPGQMLFSFVRHMEAALELFNKMPVRNVISWTALISGYAQNGK-YAKALEMFIG 155

Query: 123 VGKRERHLNPNEVTLASVLPACAHIGALDMGKRI 129
           + + E+   PNEV++ASVLPAC+ +GALD+GKRI
Sbjct: 156 L-ENEKGTKPNEVSIASVLPACSQLGALDIGKRI 183

BLAST of Csor.00g066830 vs. NCBI nr
Match: XP_031745381.1 (pentatricopeptide repeat-containing protein At5g08510-like [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 5.96e-24
Identity = 74/156 (47.44%), Postives = 89/156 (57.05%), Query Frame = 0

Query: 3   CTLFDDLFLKPSVFLYNKFIQTFYLPFVTTPMLVALLSNVPPRFYARVRRKWGQHWNC-- 62
           CTLFD +  KPSV+LYNKFIQTF    +  P    LL       Y ++  + G H NC  
Sbjct: 36  CTLFDQI-PKPSVYLYNKFIQTF--SSIGHPHRCWLL-------YCQMCSQ-GLHANCLM 95

Query: 63  ---------------------------FDKMPTRNVISWTAWISGYAQNGKSMAKALEMF 122
                                      F+KMP RNVISWTA ISGYAQNGK  AKALEMF
Sbjct: 96  KCVEIYHLEFVDCGLCKVRHMEAALELFNKMPVRNVISWTALISGYAQNGK-YAKALEMF 155

Query: 123 SEVGKRERHLNPNEVTLASVLPACAHIGALDMGKRI 129
             + + E+   PNEV++ASVLPAC+ +GALD+GKRI
Sbjct: 156 IGL-ENEKGTKPNEVSIASVLPACSQLGALDIGKRI 178

BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1EED6 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431814 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 6.04e-29
Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 0

Query: 3   CTLFDDLFLKPSVFLYNKFIQTF---------YLPFVTT----------------PMLVA 62
           CTLFD L  KPSVFLYNKFIQTF         +L +                   P   +
Sbjct: 36  CTLFD-LIPKPSVFLYNKFIQTFSSIGHHHRCWLLYYQMCLQGCSPNHHSFTFLFPACAS 95

Query: 63  LLSNVPPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVG 122
            L+  P   YAR     G     FDKMPTRNVISWTA ISGYAQNGK  AKALEMF  + 
Sbjct: 96  FLNAYPG--YARSGYM-GAALELFDKMPTRNVISWTALISGYAQNGK-YAKALEMFLRL- 155

Query: 123 KRERHLNPNEVTLASVLPACAHIGALDMGKRI 129
           + E+   PNEVT+ASVLPACAH+GALD+GKRI
Sbjct: 156 ENEKGTKPNEVTIASVLPACAHLGALDIGKRI 181

BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1IQD7 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479063 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 5.97e-27
Identity = 79/152 (51.97%), Postives = 89/152 (58.55%), Query Frame = 0

Query: 3   CTLFDDLFLKPSVFLYNKFIQTF---------YLPFVTT----------------PMLVA 62
           CTLFD L  KPSVFLYNKFIQTF         +L +                   P   +
Sbjct: 36  CTLFD-LIPKPSVFLYNKFIQTFSSIGHPHRCWLLYYQMCLQGCSPNHHSFTFLFPACAS 95

Query: 63  LLSNVPPRFYARVRRKWGQHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVG 122
            L+  P   YAR     G     FDKMP RNVISWTA ISGYAQNGK  AKALEMF  + 
Sbjct: 96  FLNAYPG--YARSGYM-GAALELFDKMPIRNVISWTALISGYAQNGK-YAKALEMFLRL- 155

Query: 123 KRERHLNPNEVTLASVLPACAHIGALDMGKRI 129
           + E+   PNEVT+ASVLPACA +GALD+GKRI
Sbjct: 156 ENEKGTKPNEVTIASVLPACAQLGALDIGKRI 181

BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1E8Q2 (pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431814 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 2.02e-23
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FDKMPTRNVISWTA ISGYAQNGK  AKALEMF  + + E+   PNEVT+ASVLPACAH+
Sbjct: 171 FDKMPTRNVISWTALISGYAQNGK-YAKALEMFLRL-ENEKGTKPNEVTIASVLPACAHL 230

Query: 121 GALDMGKRI 129
           GALD+GKRI
Sbjct: 231 GALDIGKRI 237

BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1ISU4 (pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479063 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.72e-21
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FDKMP RNVISWTA ISGYAQNGK  AKALEMF  + + E+   PNEVT+ASVLPACA +
Sbjct: 171 FDKMPIRNVISWTALISGYAQNGK-YAKALEMFLRL-ENEKGTKPNEVTIASVLPACAQL 230

Query: 121 GALDMGKRI 129
           GALD+GKRI
Sbjct: 231 GALDIGKRI 237

BLAST of Csor.00g066830 vs. ExPASy TrEMBL
Match: A0A6J1D160 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016399 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.09e-21
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FD+MP RNV+SWTA ISGY+QNGK  AKALEMF  + + ER + PNEVT+ASVLPACA +
Sbjct: 171 FDRMPVRNVVSWTALISGYSQNGK-YAKALEMFLRL-ENERGIKPNEVTVASVLPACAQL 230

Query: 121 GALDMGKRI 129
           GALD+G+RI
Sbjct: 231 GALDIGRRI 237

BLAST of Csor.00g066830 vs. TAIR 10
Match: AT5G08510.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13
Identity = 33/69 (47.83%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FD MP +NV SWT  ISG++QNG + ++AL+MF  + ++++ + PN +T+ SVLPACA++
Sbjct: 171 FDSMPRKNVTSWTTVISGFSQNG-NYSEALKMFLCM-EKDKSVKPNHITVVSVLPACANL 230

Query: 121 GALDMGKRI 130
           G L++G+R+
Sbjct: 231 GELEIGRRL 237

BLAST of Csor.00g066830 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           FD+MP+RNV++WTA I+GY Q+ +   K + +F E+ K +  + PNE TL+SVL ACAH+
Sbjct: 263 FDEMPSRNVVTWTALIAGYVQS-RCFDKGMLVFEEMLKSD--VAPNEKTLSSVLSACAHV 322

Query: 121 GALDMGKRI 130
           GAL  G+R+
Sbjct: 323 GALHRGRRV 328

BLAST of Csor.00g066830 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLPACAHI 120
           F  MP RNV+SW+A I+ YA+NGK+  +AL  F E+ +  +  +PN VT+ SVL ACA +
Sbjct: 240 FGGMPVRNVVSWSAMIACYAKNGKAF-EALRTFREMMRETKDSSPNSVTMVSVLQACASL 299

Query: 121 GALDMGKRI 130
            AL+ GK I
Sbjct: 300 AALEQGKLI 307

BLAST of Csor.00g066830 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 61  FDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEV---GKRERHLNPNEVTLASVLPAC 120
           FD+MP RNVISW+  I+GY   GK   +AL++F E+      E  + PNE T+++VL AC
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGK-YKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSAC 210

Query: 121 AHIGALDMGK 128
             +GAL+ GK
Sbjct: 211 GRLGALEQGK 219

BLAST of Csor.00g066830 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 56  QHWNCFDKMPTRNVISWTAWISGYAQNGKSMAKALEMFSEVGKRERHLNPNEVTLASVLP 115
           Q  N FD+MP RN +SW + ISG+ +NG+    AL+MF E+  +E+ + P+  T+ S+L 
Sbjct: 210 QAQNLFDEMPQRNGVSWNSMISGFVRNGR-FKDALDMFREM--QEKDVKPDGFTMVSLLN 269

Query: 116 ACAHIGALDMGKRI 130
           ACA++GA + G+ I
Sbjct: 270 ACAYLGASEQGRWI 280

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FNN71.4e-1247.83Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX... [more]
Q9SX452.5e-1250.72Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX... [more]
Q9STF31.6e-1149.28Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
Q683I92.3e-1047.14Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX... [more]
Q9SJG63.0e-1043.24Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
KAG6583627.15.16e-92100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022924285.11.25e-2853.29pentatricopeptide repeat-containing protein At5g08510 isoform X2 [Cucurbita mosc... [more]
XP_022979296.11.23e-2651.97pentatricopeptide repeat-containing protein At5g08510 isoform X2 [Cucurbita maxi... [more]
KAE8637264.11.69e-2448.05hypothetical protein CSA_017680 [Cucumis sativus][more]
XP_031745381.15.96e-2447.44pentatricopeptide repeat-containing protein At5g08510-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1EED66.04e-2953.29pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Cucurbita mo... [more]
A0A6J1IQD75.97e-2751.97pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Cucurbita ma... [more]
A0A6J1E8Q22.02e-2376.81pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita mo... [more]
A0A6J1ISU41.72e-2173.91pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita ma... [more]
A0A6J1D1606.09e-2169.57pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Momordica ch... [more]
Match NameE-valueIdentityDescription
AT5G08510.11.0e-1347.83Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G50270.11.8e-1350.72Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G46790.11.1e-1249.28Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G62890.11.6e-1147.14Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G42920.12.1e-1143.24Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..127
e-value: 1.1E-12
score: 49.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 70..96
e-value: 0.0017
score: 16.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 68..103
score: 8.70333
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 53..129
NoneNo IPR availablePANTHERPTHR47928:SF161OS06G0125600 PROTEINcoord: 53..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g066830.m01Csor.00g066830.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding