Csor.00g066290 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g066290
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Peptidyl-tRNA hydrolase
Location	Csor_Chr13: 10543228 .. 10544448 (+)
RNA-Seq Expression	Csor.00g066290
Synteny	Csor.00g066290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATGTCCGTATGCTCCTATCTCTGCTATATGAAATCGAAATTTCTCTTTTCGTAACTATACCGAACGAAAAGATTATGCTTTACTTTCTGTTTAATTAATGAAGTATGCGTGGGAAACCTCTTAGGGCTGTTTCCCGAGCATGAACTTACGATTATCTCGAGAAAATTAGGATTTAAGATTGATTATTAGTGTTATCTGGATGGCCTTTATGAAGACGAATTTAAACACTAGCAGTAGCTAATGCTATGGCTAAATTTCCAGCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGTAGGTCTTGTGGGCATTCATTTTTTAATATCCTTAATACCAGGAGCTACAGCGGTAGGTTCTCACGTAGTATCTTTCTGGGCCTGTTTCATACCCTCTGCCTTTTCTTTATATTTATATATATATATCAACAGAAGTTGCATTCATGATGAACAGTTTCTGTGGTCATTTTGGCCCAATCTATTCTAAGCTTCGTATCTGAACAATGCTGTTTTTTATTTTCTATTATCTGTGAGGCATCTCAGCAGTGCATGTGTTGTCCATCCTGAAAAAAAGAAGCATATTCCATTATAATGGATTTCTGGTTGAAAGGTTGTGCTTTTGCAGAATTTTGTCTCACAAGGAACAATATACTTTCTTTGAATATGAACTTTGCTTGAAATTTGACTGCAGAAGTTTTTGTCTTACTGAAAAGCGTACTTTCTTCAGATCTGAACACAGATTTTATATTTGTGAACTTTTGTAGCTTTTCAGAGGAGAAAATAGAATTTACTTGGTTTGACTGAATAATAGTAAATGTATTAAAAGACACCATGTGCGCCTGATCCAAGAATTTAAGCTCAGTAAAAGATTCTAGGATTACGAGTTTTGATTGTATGATTTAAGTTTGTAAATAGAATAAACATTAAGAAGAACAACAGGCTGAGAGAGATGAATTTTAATTGCTTATTTACTATCCGTGGCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTTTATGATATCAGCTGATAAATGGGTGAAAGCATTCTAG

mRNA sequence

ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTTTATGATATCAGCTGATAAATGGGTGAAAGCATTCTAG

Coding sequence (CDS)

ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTTTATGATATCAGCTGATAAATGGGTGAAAGCATTCTAG

Protein sequence

MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMRSIIDHLRGSRDYPRWFFMISADKWVKAF

Homology

[Close]

BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q8GW64 (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-13
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   STSSPPITDHL-AVDDKKPAPPP--KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEG 61
           S SS P ++ L A+   KP  PP   PWLIVGLGNPGKKY  TRHN+GFEMVD +A+AEG
Sbjct: 68  SFSSQPESELLQALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEG 127

[Close]

BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q5N9Q7 (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 24 KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 61
          KPWL VGLGNPGK Y  TRHN+GFEM+D +AEAEGIS
Sbjct: 54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGIS 90

[Close]

BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q10LI6 (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMR 64
          PWL VGLGNPG+KY  TRHN+GF+M+D  A+++GIS  R
Sbjct: 60 PWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTR 98

[Close]

BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q5ZCL8 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 61
          PWLI GLGNPG KY  TRHN+GFEMVD +A  EGI+
Sbjct: 64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGIT 99

[Close]

BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q9LF14 (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2B PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-09
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI 60
          PWLIVGLGNPG KY  TRHN+GFEM+D +A  EG+
Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGV 79

[Close]

BLAST of Csor.00g066290 vs. NCBI nr
Match: KAG6584368.1 (Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (499), Expect = 1.76e-63
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
          MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
Sbjct: 1  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60

Query: 61 RMRSIIDHLRGSRDYPRWFFMISADKWVKAF 91
          RMRSIIDHLRGSRDYPRWFFMISADKWVKAF
Sbjct: 61 RMRSIIDHLRGSRDYPRWFFMISADKWVKAF 91

[Close]

BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_038893867.1 (peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida] >XP_038893868.1 peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 1.93e-29
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSS P TD L VDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Sbjct: 57  MSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDTVAEAEGIS 116

[Close]

BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_038893864.1 (peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida] >XP_038893865.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida] >XP_038893866.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 3.80e-29
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSS P TD L VDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Sbjct: 57  MSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDTVAEAEGIS 116

[Close]

BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_022136978.1 (peptidyl-tRNA hydrolase, chloroplastic [Momordica charantia])

HSP 1 Score: 115 bits (287), Expect = 4.48e-29
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSSPP  D LAVDDKKP+PPPKPWLIVGLGNPGKKYD TRHN+GFEMVD VAEAEGIS
Sbjct: 43  MSTSSPPTADQLAVDDKKPSPPPKPWLIVGLGNPGKKYDGTRHNVGFEMVDTVAEAEGIS 102

[Close]

BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_008457243.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo])

HSP 1 Score: 114 bits (284), Expect = 1.34e-28
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSS P TD  A+DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Sbjct: 56  MSTSSSPTTDQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGIS 115

[Close]

BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A6J1C906 (peptidyl-tRNA hydrolase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008552 PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.17e-29
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSSPP  D LAVDDKKP+PPPKPWLIVGLGNPGKKYD TRHN+GFEMVD VAEAEGIS
Sbjct: 43  MSTSSPPTADQLAVDDKKPSPPPKPWLIVGLGNPGKKYDGTRHNVGFEMVDTVAEAEGIS 102

[Close]

BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A1S3C5R3 (peptidyl-tRNA hydrolase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496915 PE=3 SV=1)

HSP 1 Score: 114 bits (284), Expect = 6.47e-29
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSS P TD  A+DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Sbjct: 56  MSTSSSPTTDQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGIS 115

[Close]

BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A6J1K5W5 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 2.31e-28
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
          MSTSSP   D LAV++KKPAPPPKPWLIVGLGNPGKKY+RTRHN+GFEM+D VAE EGIS
Sbjct: 9  MSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGIS 68

[Close]

BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A0A0LVQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042230 PE=3 SV=1)

HSP 1 Score: 112 bits (280), Expect = 2.55e-28
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSS P T+  A+DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Sbjct: 56  MSTSSSPTTEQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGIS 115

[Close]

BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A6J1JZW9 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 8.60e-28
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 60
           MSTSSP   D LAV++KKPAPPPKPWLIVGLGNPGKKY+RTRHN+GFEM+D VAE EGIS
Sbjct: 55  MSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGIS 114

[Close]

BLAST of Csor.00g066290 vs. TAIR 10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   STSSPPITDHL-AVDDKKPAPPP--KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEG 61
           S SS P ++ L A+   KP  PP   PWLIVGLGNPGKKY  TRHN+GFEMVD +A+AEG
Sbjct: 68  SFSSQPESELLQALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEG 127

[Close]

BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI 60
          PWLIVGLGNPG KY  TRHN+GFEM+D +A  EG+
Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGV 79

[Close]

BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G16140.2 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI 60
          PWLIVGLGNPG KY  TRHN+GFEM+D +A  EG+
Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGV 79

[Close]

BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-10
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 61
          PWLIVGLGNPG KY  TRHN+GFEM+D +A A  IS
Sbjct: 55 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDIS 90

[Close]

BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G38290.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-10
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 25 PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS 61
          PWLIVGLGNPG KY  TRHN+GFEM+D +A A  IS
Sbjct: 51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDIS 86

The following BLAST results are available for this feature:

BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW64	3.5e-13	64.52	Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18...	[more]
Q5N9Q7	1.9e-11	78.38	Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q10LI6	1.8e-09	64.10	CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]
Q5ZCL8	1.8e-09	72.22	Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza...	[more]
Q9LF14	2.4e-09	71.43	Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Ara...	[more]

BLAST of Csor.00g066290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584368.1	1.76e-63	100.00	Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_038893867.1	1.93e-29	90.00	peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida] >XP_038893...	[more]
XP_038893864.1	3.80e-29	90.00	peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida] >XP_038893...	[more]
XP_022136978.1	4.48e-29	88.33	peptidyl-tRNA hydrolase, chloroplastic [Momordica charantia]	[more]
XP_008457243.1	1.34e-28	88.33	PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]	[more]

BLAST of Csor.00g066290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C906	2.17e-29	88.33	peptidyl-tRNA hydrolase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A1S3C5R3	6.47e-29	88.33	peptidyl-tRNA hydrolase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496915 P...	[more]
A0A6J1K5W5	2.31e-28	81.67	peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=36...	[more]
A0A0A0LVQ7	2.55e-28	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042230 PE=3 SV=1	[more]
A0A6J1JZW9	8.60e-28	81.67	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=36...	[more]

BLAST of Csor.00g066290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18440.1	2.5e-14	64.52	Peptidyl-tRNA hydrolase family protein	[more]
AT5G16140.1	1.7e-10	71.43	Peptidyl-tRNA hydrolase family protein	[more]
AT5G16140.2	1.7e-10	71.43	Peptidyl-tRNA hydrolase family protein	[more]
AT5G38290.2	3.7e-10	72.22	Peptidyl-tRNA hydrolase family protein	[more]
AT5G38290.1	3.7e-10	72.22	Peptidyl-tRNA hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001328	Peptidyl-tRNA hydrolase	PFAM	PF01195	Pept_tRNA_hydro	coord: 27..62 e-value: 1.1E-11 score: 44.9
IPR001328	Peptidyl-tRNA hydrolase	PANTHER	PTHR17224	PEPTIDYL-TRNA HYDROLASE	coord: 16..60
IPR036416	Peptidyl-tRNA hydrolase superfamily	GENE3D	3.40.50.1470		coord: 11..63 e-value: 1.5E-13 score: 52.5
IPR036416	Peptidyl-tRNA hydrolase superfamily	SUPERFAMILY	53178	Peptidyl-tRNA hydrolase-like	coord: 25..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR018171	Peptidyl-tRNA hydrolase, conserved site	PROSITE	PS01195	PEPT_TRNA_HYDROL_1	coord: 38..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g066290.m01	Csor.00g066290.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity