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Csor.00g066290 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATGTCCGTATGCTCCTATCTCTGCTATATGAAATCGAAATTTCTCTTTTCGTAACTATACCGAACGAAAAGATTATGCTTTACTTTCTGTTTAATTAATGAAGTATGCGTGGGAAACCTCTTAGGGCTGTTTCCCGAGCATGAACTTACGATTATCTCGAGAAAATTAGGATTTAAGATTGATTATTAGTGTTATCTGGATGGCCTTTATGAAGACGAATTTAAACACTAGCAGTAGCTAATGCTATGGCTAAATTTCCAGCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGTAGGTCTTGTGGGCATTCATTTTTTAATATCCTTAATACCAGGAGCTACAGCGGTAGGTTCTCACGTAGTATCTTTCTGGGCCTGTTTCATACCCTCTGCCTTTTCTTTATATTTATATATATATATCAACAGAAGTTGCATTCATGATGAACAGTTTCTGTGGTCATTTTGGCCCAATCTATTCTAAGCTTCGTATCTGAACAATGCTGTTTTTTATTTTCTATTATCTGTGAGGCATCTCAGCAGTGCATGTGTTGTCCATCCTGAAAAAAAGAAGCATATTCCATTATAATGGATTTCTGGTTGAAAGGTTGTGCTTTTGCAGAATTTTGTCTCACAAGGAACAATATACTTTCTTTGAATATGAACTTTGCTTGAAATTTGACTGCAGAAGTTTTTGTCTTACTGAAAAGCGTACTTTCTTCAGATCTGAACACAGATTTTATATTTGTGAACTTTTGTAGCTTTTCAGAGGAGAAAATAGAATTTACTTGGTTTGACTGAATAATAGTAAATGTATTAAAAGACACCATGTGCGCCTGATCCAAGAATTTAAGCTCAGTAAAAGATTCTAGGATTACGAGTTTTGATTGTATGATTTAAGTTTGTAAATAGAATAAACATTAAGAAGAACAACAGGCTGAGAGAGATGAATTTTAATTGCTTATTTACTATCCGTGGCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTTTATGATATCAGCTGATAAATGGGTGAAAGCATTCTAG ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTTTATGATATCAGCTGATAAATGGGTGAAAGCATTCTAG ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTTTATGATATCAGCTGATAAATGGGTGAAAGCATTCTAG MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMRSIIDHLRGSRDYPRWFFMISADKWVKAF Homology
BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q8GW64 (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2) HSP 1 Score: 75.5 bits (184), Expect = 3.5e-13 Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q5N9Q7 (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11 Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q10LI6 (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0347800 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09 Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q5ZCL8 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy Swiss-Prot
Match: Q9LF14 (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2B PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 2.4e-09 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of Csor.00g066290 vs. NCBI nr
Match: KAG6584368.1 (Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 196 bits (499), Expect = 1.76e-63 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_038893867.1 (peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida] >XP_038893868.1 peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida]) HSP 1 Score: 115 bits (289), Expect = 1.93e-29 Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_038893864.1 (peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida] >XP_038893865.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida] >XP_038893866.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida]) HSP 1 Score: 115 bits (289), Expect = 3.80e-29 Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_022136978.1 (peptidyl-tRNA hydrolase, chloroplastic [Momordica charantia]) HSP 1 Score: 115 bits (287), Expect = 4.48e-29 Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. NCBI nr
Match: XP_008457243.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]) HSP 1 Score: 114 bits (284), Expect = 1.34e-28 Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A6J1C906 (peptidyl-tRNA hydrolase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008552 PE=3 SV=1) HSP 1 Score: 115 bits (287), Expect = 2.17e-29 Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A1S3C5R3 (peptidyl-tRNA hydrolase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496915 PE=3 SV=1) HSP 1 Score: 114 bits (284), Expect = 6.47e-29 Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A6J1K5W5 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1) HSP 1 Score: 107 bits (267), Expect = 2.31e-28 Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A0A0LVQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042230 PE=3 SV=1) HSP 1 Score: 112 bits (280), Expect = 2.55e-28 Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Csor.00g066290 vs. ExPASy TrEMBL
Match: A0A6J1JZW9 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1) HSP 1 Score: 107 bits (267), Expect = 8.60e-28 Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0
BLAST of Csor.00g066290 vs. TAIR 10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein ) HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14 Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0
BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein ) HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G16140.2 (Peptidyl-tRNA hydrolase family protein ) HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein ) HSP 1 Score: 61.6 bits (148), Expect = 3.7e-10 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of Csor.00g066290 vs. TAIR 10
Match: AT5G38290.1 (Peptidyl-tRNA hydrolase family protein ) HSP 1 Score: 61.6 bits (148), Expect = 3.7e-10 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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