Csor.00g066010 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g066010
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosomal protein S24/S35, mitochondrial
Location	Csor_Chr13: 10410842 .. 10412017 (+)
RNA-Seq Expression	Csor.00g066010
Synteny	Csor.00g066010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGAGCTATATGGGGAGCTGTCTTCGCTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGCTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACATCGATTGAAAACAAGGATTCTCTCGTCGACGATGATATCAGTAACGAAGGTAAATGTAGTTGAATGTCGTTTGTCAAAGTTCTCTGTGTTTTCTTTCTAGGAAAAGATTTTTCAAATAGATTTAATTATATTCTCGTATTTCTAAGCATGAATCATCTTCTATCGTATTACATTTATATTTGCTTTCTGCGGTTTAATGGTTTGAGTTCTTGAGTAAGTATTAGTATAACGCAATGGTTACCTATGAAATTTTGAATGATATCCTCCTCTTATGTGTAAGTTGTTTAATACTGGAAATTTTAGATAAGATGTGTTCAGAATCGTTGTTAAAGAAACTACTTAACAACAAGTGCAATAAAATTTCATTTTGTTTTGTTGGTTCTAGTGTATGTTGAAAGTGCTCTTAATCAAATTAGCGATAAGTTTTGATAATCAATATTTTGAGAATGATGTGAAAATAATTACTACTACAAAACAATTAAGTGAAAGAAGAGTATAAATATCAGCGAGAGAAAGCGATTAGTGAAGTATTTTAACCATTTCATGATTAAGGGAGCCTTGATTGACCCCCAAAGTTGTGTAAAGAGCTTGATATTTCTGGATTGCTCATATTGACATGAAGTTCATTTGCAACTCTGTTCATTTTTTTTGTAGTATGATTTTCTTTTTAGAAGGCAATGAAAGCAATAGATACACTCAGGTTCGATCTTAGACAGTAAGTTTTTTGTGATTACAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTCGAGTCCTTACCAGCAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAATGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAA

mRNA sequence

ATGAAACGAGCTATATGGGGAGCTGTCTTCGCTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGCTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACATCGATTGAAAACAAGGATTCTCTCGTCGACGATGATATCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTCGAGTCCTTACCAGCAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAATGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAA

Coding sequence (CDS)

ATGAAACGAGCTATATGGGGAGCTGTCTTCGCTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGCTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACATCGATTGAAAACAAGGATTCTCTCGTCGACGATGATATCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTCGAGTCCTTACCAGCAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAATGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAA

Protein sequence

MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTSIENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIRQRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

Homology

[Close]

BLAST of Csor.00g066010 vs. NCBI nr
Match: KAG6584340.1 (hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300 bits (767), Expect = 4.53e-102
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]

BLAST of Csor.00g066010 vs. NCBI nr
Match: KAG7019929.1 (hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298 bits (763), Expect = 1.85e-101
Identity = 160/162 (98.77%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDDISNEELKRKIDRFYEGD+ESLPAIFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDIESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]

BLAST of Csor.00g066010 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 293 bits (751), Expect = 1.25e-99
Identity = 157/162 (96.91%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVF ACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDD+SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           QR+PGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]

BLAST of Csor.00g066010 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285 bits (728), Expect = 4.00e-96
Identity = 151/162 (93.21%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVF  CSRRVSISPLLQTLRSGPLLP FSVSI+SQSRCYS+GNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDD+SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           QRMPGEVEDFKDEEYDSDLSGELNE+DEEM+ED SEEEDRRV
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162

[Close]

BLAST of Csor.00g066010 vs. NCBI nr
Match: XP_023000953.1 (uncharacterized protein LOC111495236 [Cucurbita maxima])

HSP 1 Score: 279 bits (713), Expect = 7.23e-94
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVFAACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDD +SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR 160
           QRMPGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 160

[Close]

BLAST of Csor.00g066010 vs. ExPASy TrEMBL
Match: A0A6J1E804 (uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC111431572 PE=4 SV=1)

HSP 1 Score: 293 bits (751), Expect = 6.03e-100
Identity = 157/162 (96.91%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVF ACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDD+SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           QR+PGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]

BLAST of Csor.00g066010 vs. ExPASy TrEMBL
Match: A0A6J1KP40 (uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236 PE=4 SV=1)

HSP 1 Score: 279 bits (713), Expect = 3.50e-94
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRAIWGAVFAACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDD +SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR 160
           QRMPGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 160

[Close]

BLAST of Csor.00g066010 vs. ExPASy TrEMBL
Match: A0A5D3BIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002170 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 2.31e-60
Identity = 113/163 (69.33%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRA+WGAVF  CSR +S+SP L+T RS PLL  FSV      RCYSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTL---RCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEG-DVESLPAIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDD+S EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           RQRMPGE+EDFK EEYDS+L+ +            SEEED+R+
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDDAASD--------SEEEDKRI 150

[Close]

BLAST of Csor.00g066010 vs. ExPASy TrEMBL
Match: A0A1S3CEX3 (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 2.31e-60
Identity = 113/163 (69.33%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRA+WGAVF  CSR +S+SP L+T RS PLL  FSV      RCYSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTL---RCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEG-DVESLPAIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDD+S EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           RQRMPGE+EDFK EEYDS+L+ +            SEEED+R+
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDDAASD--------SEEEDKRI 150

[Close]

BLAST of Csor.00g066010 vs. ExPASy TrEMBL
Match: A0A0A0LT17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 2.99e-57
Identity = 115/164 (70.12%), Postives = 128/164 (78.05%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60
           MKRA+WGAVF   S  +S+SP L+T RS PLL  FSVS     R YSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTL---RRYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDISNEELKRKIDRFYEG-DVESLPAIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDD+S EELKRKID+FYEG D +SLPAIFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRMPGEVEDFK-DEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162
           RQ++PGEVEDFK +EEYDSDL     + D     D SEEEDRR+
Sbjct: 121 RQQLPGEVEDFKGEEEYDSDLM----DDDSSDASDDSEEEDRRI 155

[Close]

BLAST of Csor.00g066010 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 55/152 (36.18%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 13  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNST---------SI 72
           C+RR+ +SP +  Q   + P L   +   + + R +SS     +G NST         S 
Sbjct: 12  CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPTDSP 71

Query: 73  ENKDSLVDDDISNEELKRKIDRFY-EGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 132
           E KD LV +D+SN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I 
Sbjct: 72  EKKD-LVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI- 131

Query: 133 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKE 153
           + +P + +D KDE+++SD   E + +DEE+++
Sbjct: 132 ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]

BLAST of Csor.00g066010 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 55/152 (36.18%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 13  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNST---------SI 72
           C+RR+ +SP +  Q   + P L   +   + + R +SS     +G NST         S 
Sbjct: 12  CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPTDSP 71

Query: 73  ENKDSLVDDDISNEELKRKIDRFY-EGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 132
           E KD LV +D+SN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I 
Sbjct: 72  EKKD-LVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI- 131

Query: 133 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKE 153
           + +P + +D KDE+++SD   E + +DEE+++
Sbjct: 132 ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]

BLAST of Csor.00g066010 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 55/154 (35.71%), Postives = 94/154 (61.04%), Query Frame = 0


Query: 7   GAVF---AACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYS--SGNDKYNGLNS--T 66
           GA+F   + C+RR+ +S  +    + P L   +     + R +S  SG +      S  T
Sbjct: 3   GALFRNASLCARRIILSSRISP--NVPFLTPIAAPAPPKFRFFSSESGENSTTATESSPT 62

Query: 67  SIENKDSLVDDDISNEELKRKIDR-FYEGDVESLPAIFEAILKRKLSGKHGDADDELMKE 126
              +K  LV +D+SN+ELK +ID+ F EG+ ++LP + EA+L+R+L  KH + DDELM++
Sbjct: 63  DSSDKKDLVVEDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDELMEK 122

Query: 127 IRQRMPGEVEDFKDEEYDSDLSGELNESDEEMKE 153
           I + +P + +D KDE+++SD   E + +DEE+++
Sbjct: 123 I-ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 151

[Close]

BLAST of Csor.00g066010 vs. TAIR 10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-07
Identity = 34/104 (32.69%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 57  NSTSIENKDSLVDDDISNEELKRKIDRFY-EGDVESLPAIFEAILKRKLSGKHGDADDEL 116
           +S S  ++    ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+
Sbjct: 49  SSESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEV 108

Query: 117 MKEIRQRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEED 160
           M  +R+    +     D + D +  G  + SD +++ D   + D
Sbjct: 109 MDVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGD 152

[Close]

BLAST of Csor.00g066010 vs. TAIR 10
Match: AT1G73770.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-07
Identity = 34/104 (32.69%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 57  NSTSIENKDSLVDDDISNEELKRKIDRFY-EGDVESLPAIFEAILKRKLSGKHGDADDEL 116
           +S S  ++    ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+
Sbjct: 49  SSESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEV 108

Query: 117 MKEIRQRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEED 160
           M  +R+    +     D + D +  G  + SD +++ D   + D
Sbjct: 109 MDVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGD 152

The following BLAST results are available for this feature:

BLAST of Csor.00g066010 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g066010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584340.1	4.53e-102	100.00	hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019929.1	1.85e-101	98.77	hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022924024.1	1.25e-99	96.91	uncharacterized protein LOC111431572 [Cucurbita moschata]	[more]
XP_023519890.1	4.00e-96	93.21	uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]	[more]
XP_023000953.1	7.23e-94	93.75	uncharacterized protein LOC111495236 [Cucurbita maxima]	[more]

BLAST of Csor.00g066010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E804	6.03e-100	96.91	uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A6J1KP40	3.50e-94	93.75	uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236...	[more]
A0A5D3BIA4	2.31e-60	69.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEX3	2.31e-60	69.33	uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=...	[more]
A0A0A0LT17	2.99e-57	70.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1	[more]

BLAST of Csor.00g066010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18240.1	2.4e-12	36.18	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.2	2.4e-12	36.18	Ribosomal protein S24/S35, mitochondrial	[more]
AT4G21460.1	4.2e-12	35.71	Ribosomal protein S24/S35, mitochondrial	[more]
AT1G73770.1	6.9e-07	32.69	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G73770.2	6.9e-07	32.69	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g066010.m01	Csor.00g066010.m01	mRNA