Csor.00g065570 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g065570
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Nascent polypeptide-associated complex subunit beta
Location	Csor_Chr13: 10180005 .. 10182659 (-)
RNA-Seq Expression	Csor.00g065570
Synteny	Csor.00g065570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGTTGGTTGCCTTTTTATCTATTGAAAGTTCAAACTGTGTAAAAAGAGTCAGTTGTTTATTGCTTGATTTATTTAATAAGAAATCATAAATTAATTCAACCGGAAAATGGAACTCTTACAAATCTTACCTAGTTGTTCTTGATTATAGTTTATTTGTTGGTAGATAATTTAATTGAACCATAATATCATCCAAATAAGGTGGTTTGGTCTGAGAGGTTAAGTTAACGCAACATCTAGTACTCTGTTCCCACGTCCACTTCTGCTTTCCTCAGTTCTCTTATCCATCGTGCTATTAATTTTGATTGGCTTCTTTCTTATAATCAGAAGCGTTTTCTCTAGCTAGCAGTTAATTTTGAATTTCTGATTTGCAGTTCATGGTTTACGATTGATGAAAAGCGCTCGCACACGCACACATTATTATAATATTCAGTTGACTAATGGATGAATAAACAAACATAAATTCCATGCTTGTTTGAGTATTGCATCTTTCAGTTACGCAAGTTGTCATCTCTCGACATTTTCTCATGCTTCCTTAACAAAATGACGTTGATAATTTTCTTTATGTATTTTGTCAATTAAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAATTTGTTAATCCGAAAGGTAAAGCCACTTAACTATCCTTGACTTCTTACCATCGATATCTTGATACGTAACTCATATTTTGCTGTTTCTCGTTCTCTATTTCAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAGTACGTCTCTTACCACCTTTTGAATATAATGGAACATACAACTGACCTTGTGTTCTAATTTGTAGTTATCTGAAACTGAAATAATTTTTTTCATTCAAATTTGGTCGTATAATTTTTAAAACACAAAAGAATAGTCCTAAAAATGAAAACGACATAGTAGAGTTGTCTGCAGACTATGCTGTTTTTAAGGTAACTTTTAGTTTCCAATTGCGGGATCAATAGTGGTTTTTATTTCAATTACTACGTTGTGTTCAAACCGTTTTTAAATCAGTGATGAATATTTTTTTTTTTTATTGAAGTATTTTTAAGGTGCCGTTTGGAAATGCTATAAAAAAACCGCTCAATTTTTTATTACAAAATTTTATTCTTTAATGAGGAAAACCAATCTGTCCAGTGAAATATTTAGAACTGTTTTTAAAATGAGTTATTCTTACTTCTTGGAGTACCTGTTAATTGTGTACGAACCTTCAAGTGTTTTTAGGAATTAAATATGATGTGGATCACAAAAAAAGTGGCTATAAGTGCACACTGCAACTTACGTCCAACCGTTTGAAAGTAGTTTTTTCCGGCATAGTTCCATCTAACACTTCAAAAATTTCCAGATTGTTCTTCGTAGAAAAATTCAAACTACTCCCCGTTTTTTTTTTTTTTTTTTTTTTTAAGAAGTGCTGTTGCCCTGTTATAATGTGGCAAAATAAATTTTACCAAGGGTTCTCAGGGATTAGGATTACGTTTTCAAAGATTTAATGCAAAACAACATGCTGCCCTTGGCTTGGAATTTGAAATACGTCCAAATTCGAATGCTTCGTGTCATTGTGTCCAGCATAGGATTATCTCTGAGACTAGATCGACTTTTTTAATGCTAAAAAGTGTTTTTAAACGCCTAAAAGAGTCCAAATCCAAACAAGTTGGAGTTTCATAATATGTTATTAAATAAAGATTTTGGCTAAAAGCTATCGTTTTAAATCGGGGGCAAATAGTTTCGTTTGATACTGCAAAGTCTGGGATAATAGTTCACCTTTGCTAAATCGTGCCATTATTTTTTATATTTATACTTGGATTGGAATATTGACAATTGTGACTTCTGATCTGATGACTCTTACTTTAAATTATGCCATTACTTTTTATATTTACTTCAATGAGACCTTGTTTATTTCTGGAATAGATGTGTTCTTACCGCAAGCAAGTCTTGGGATAAAAAATTCTGTAGCATCTTGCTTATGCAAAAGATGTTACTCGAGGTCCCTCGCTTTCACTGGCACCTTTTGTTTATTTCTGATTGTGAAGCCTTTCTATTAACACTGCCCAGGATGCTTGTTGTGATCTTTAGCCATCTCTTGTTAATATCTATCACGGTTTAAACTCATCATGTATTACTAATGATGCCTCTCTAATATTTTGATTTCTTCTCAGAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGTAAGTACTACGCTAGGATTCTGGTGTTTCCTGCGGAGTTGCAATTTTAACTACGGCGCTAAGAATACGACTTGTTTGCATGTAAATATTTCCAGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCCAATGCAGAGGATGATGACGACGATGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAG

mRNA sequence

ATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAATTTGTTAATCCGAAAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCCAATGCAGAGGATGATGACGACGATGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAG

Coding sequence (CDS)

ATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAATTTGTTAATCCGAAAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCCAATGCAGAGGATGATGACGACGATGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAG

Protein sequence

MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS

Homology

[Close]

BLAST of Csor.00g065570 vs. ExPASy Swiss-Prot
Match: Q9CAT7 (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.6e-64
Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAP--GEAAAAANAEDDDDDVPDLVEGQTFEAAAEE 156
           KQAP  G+  A    EDDDDDVPDLV G+TFE  A E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Csor.00g065570 vs. ExPASy Swiss-Prot
Match: Q9SMW7 (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.8e-63
Identity = 131/157 (83.44%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGE--AAAAANAEDDDDDVPDLVEGQTFEAAAEE 156
           KQA GE  AA+A   E+DDDDVP+LV G+TFE AAEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Csor.00g065570 vs. ExPASy Swiss-Prot
Match: Q6PC91 (Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.7e-37
Identity = 84/147 (57.14%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QKQA-PGEAAAAANAEDDDDDVPDLVE 146
            +Q    +A  A + +++DDDVPDLVE
Sbjct: 121 PRQVLDNKAPKAEDIDEEDDDVPDLVE 147

[Close]

BLAST of Csor.00g065570 vs. ExPASy Swiss-Prot
Match: A2R091 (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=egd1 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-37
Identity = 82/155 (52.90%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD AKL +M  +VR GGKG+ RRK K VHK++  DDK+LQ+TLK++ V  I AIEEVN+F
Sbjct: 1   MDQAKLARMQQSVRIGGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMF 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           K+D  VI F  PKV AS+ +NT+ + G+ + K+L +++PGI+NQLGPD+L +LRKLAE +
Sbjct: 61  KEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESY 120

Query: 121 QKQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAE 155
           Q     +A A    +D++DD+PDLVEG+ FE+  E
Sbjct: 121 QNMQKNQAGADGKKDDEEDDIPDLVEGENFESNVE 155

[Close]

BLAST of Csor.00g065570 vs. ExPASy Swiss-Prot
Match: P20290 (Transcription factor BTF3 OS=Homo sapiens OX=9606 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-36
Identity = 83/146 (56.85%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct: 50  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 109

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
            +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct: 110 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 169

Query: 121 QKQAPGEAAAAANAEDDDDDVPDLVE 146
            KQ+    A  A  EDDDD+VPDLVE
Sbjct: 170 PKQSVDGKAPLATGEDDDDEVPDLVE 195

[Close]

BLAST of Csor.00g065570 vs. NCBI nr
Match: KAG6584296.1 (Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019889.1 Basic transcription factor 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (770), Expect = 1.26e-102
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159

[Close]

BLAST of Csor.00g065570 vs. NCBI nr
Match: XP_023001813.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima])

HSP 1 Score: 300 bits (769), Expect = 1.79e-102
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDD+VIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDIVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159

[Close]

BLAST of Csor.00g065570 vs. NCBI nr
Match: XP_022923905.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata])

HSP 1 Score: 296 bits (758), Expect = 8.82e-101
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAA-NAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPGEAAAAA NAEDDDDDVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEAAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 160

[Close]

BLAST of Csor.00g065570 vs. NCBI nr
Match: XP_038895154.1 (nascent polypeptide-associated complex subunit beta-like [Benincasa hispida])

HSP 1 Score: 290 bits (742), Expect = 2.60e-98
Identity = 156/162 (96.30%), Postives = 156/162 (96.30%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGE---AAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPG    AAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGAGAGAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 162

[Close]

BLAST of Csor.00g065570 vs. NCBI nr
Match: XP_023519330.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290 bits (742), Expect = 2.88e-98
Identity = 159/165 (96.36%), Postives = 159/165 (96.36%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAA-----NAEDDDDD-VPDLVEGQTFEAAAEESKAS 159
           KQAPGEAAAAA     NAEDDDDD VPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 165

[Close]

BLAST of Csor.00g065570 vs. ExPASy TrEMBL
Match: A0A6J1KRM9 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111495842 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 8.67e-103
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDD+VIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDIVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159

[Close]

BLAST of Csor.00g065570 vs. ExPASy TrEMBL
Match: A0A6J1ED99 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111431486 PE=3 SV=1)

HSP 1 Score: 296 bits (758), Expect = 4.27e-101
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAA-NAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPGEAAAAA NAEDDDDDVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEAAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 160

[Close]

BLAST of Csor.00g065570 vs. ExPASy TrEMBL
Match: A0A1S3CT31 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 284 bits (727), Expect = 2.70e-96
Identity = 153/165 (92.73%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGE------AAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPG       AAAAAN EDDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of Csor.00g065570 vs. ExPASy TrEMBL
Match: A0A1S4DVT8 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 284 bits (727), Expect = 2.99e-96
Identity = 153/165 (92.73%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 4   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 63

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 64  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 123

Query: 121 KQAPGE------AAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPG       AAAAAN EDDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 124 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 168

[Close]

BLAST of Csor.00g065570 vs. ExPASy TrEMBL
Match: A0A6J1C7T3 (Nascent polypeptide-associated complex subunit beta OS=Momordica charantia OX=3673 GN=LOC111009031 PE=3 SV=1)

HSP 1 Score: 284 bits (726), Expect = 3.12e-96
Identity = 148/159 (93.08%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KL+KMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS 159
           KQAPG  A AANA+DDDDDVP+LVEGQTFEAAAEE  AS
Sbjct: 121 KQAPGAGAGAANAQDDDDDVPELVEGQTFEAAAEEPHAS 159

[Close]

BLAST of Csor.00g065570 vs. TAIR 10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC )

HSP 1 Score: 244.6 bits (623), Expect = 5.4e-65
Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAP--GEAAAAANAEDDDDDVPDLVEGQTFEAAAEE 156
           KQAP  G+  A    EDDDDDVPDLV G+TFE  A E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Csor.00g065570 vs. TAIR 10
Match: AT1G17880.1 (basic transcription factor 3 )

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-64
Identity = 131/157 (83.44%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGE--AAAAANAEDDDDDVPDLVEGQTFEAAAEE 156
           KQA GE  AA+A   E+DDDDVP+LV G+TFE AAEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

The following BLAST results are available for this feature:

BLAST of Csor.00g065570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAT7	7.6e-64	82.17	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
Q9SMW7	3.8e-63	83.44	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
Q6PC91	4.7e-37	57.14	Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1	[more]
A2R091	6.1e-37	52.90	Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain...	[more]
P20290	1.0e-36	56.85	Transcription factor BTF3 OS=Homo sapiens OX=9606 GN=BTF3 PE=1 SV=1	[more]

BLAST of Csor.00g065570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584296.1	1.26e-102	100.00	Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023001813.1	1.79e-102	99.37	nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima]	[more]
XP_022923905.1	8.82e-101	99.38	nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata]	[more]
XP_038895154.1	2.60e-98	96.30	nascent polypeptide-associated complex subunit beta-like [Benincasa hispida]	[more]
XP_023519330.1	2.88e-98	96.36	nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. ...	[more]

BLAST of Csor.00g065570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRM9	8.67e-103	99.37	Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ED99	4.27e-101	99.38	Nascent polypeptide-associated complex subunit beta OS=Cucurbita moschata OX=366...	[more]
A0A1S3CT31	2.70e-96	92.73	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S4DVT8	2.99e-96	92.73	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1C7T3	3.12e-96	93.08	Nascent polypeptide-associated complex subunit beta OS=Momordica charantia OX=36...	[more]

BLAST of Csor.00g065570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73230.1	5.4e-65	82.17	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	2.7e-64	83.44	basic transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 1.1E-21 score: 88.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 3.1E-19 score: 68.7
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 15.863668
IPR038187	NAC A/B domain superfamily	GENE3D	2.20.70.30		coord: 48..104 e-value: 1.6E-25 score: 90.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..159
None	No IPR available	PANTHER	PTHR10351:SF60	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA	coord: 1..158
IPR039370	Transcription factor BTF3	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g065570.m01	Csor.00g065570.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005854	nascent polypeptide-associated complex
cellular_component	GO:0042788	polysomal ribosome