Csor.00g063480 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g063480
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr13: 9104841 .. 9105661 (+)
RNA-Seq Expression	Csor.00g063480
Synteny	Csor.00g063480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCATCAGAACTCGACGGAGATCGACGTCGCATGATGAACGATGTCGGCGAAGTGGCGATTGATTTACAAGATACTGGAAGGACGACAGGGGAGAATTGTCGCCGAGAAATATTTCATGTGAACGAACGTGCCCGATCGGAGAAAGATTCTGAGGACGGTGTCGATGTTGTACCACCGAAACCTAGTTCTGTTAATCTCGATATGGTATAAGGATAATATAAACCGAGTCTAATGTTCTTAGCGAGTTCAAATCGTGTTTCCAAGTTAACATCTAAGGATGAATTCAAGTATAACATCTTCAAAAAGAAACTTAGAACTTCATGACACCTCCAAAATCTGACAGTAGAATCATATCAACTGAAAGAAATTTCGCAAGCCTATGATACTGAAAAAGAACGGTAGATTTATCACGTAAAAAAAGAAGTCTTTCGTTTGAATAAACGGTATCAATATAGGTGCTTTGTTGGTCTGAACTAGAAGGAAAAATCAATAGTACGATGGTAAATTAAGAAAAACGAGAAGAAAAAAGAATCAATAATGACACACAACACCGAGAAAGTTGTCATTAAATGGATCAAATATTTACAGAAACAAATTACAACATTCATAGAAAAACGGTATTAGCCTTGCTGAGAAACGATGTCCGCGTTGAAGAGTTGTTGAAACCTAAATAATCTGCAGAAGAAAATATTACACGATCTCAAATTACAATCCTGTGAAAGAAATCAAAGCAACCAGTTATAGAAGTGGCCAACTTCGTCTGTGAGGTGAGAAGAGCTCGGAACCTCGTAGTACCTGAAGGAACTGACAGCTGA

mRNA sequence

ATGCAGTCATCAGAACTCGACGGAGATCGACGTCGCATGATGAACGATGTCGGCGAAGTGGCGATTGATTTACAAGATACTGGAAGGACGACAGGGGAGAATTGTCGCCGAGAAATATTTCATGTGAACGAACGTGCCCGATCGGAGAAAGATTCTGAGGACGGTGTCGATGTTGTACCACCGAAACCTAGTTCTGTTAATCTCGATATGAAATCAAAGCAACCAGTTATAGAAGTGGCCAACTTCGTCTGTGAGGTGAGAAGAGCTCGGAACCTCGTAGTACCTGAAGGAACTGACAGCTGA

Coding sequence (CDS)

ATGCAGTCATCAGAACTCGACGGAGATCGACGTCGCATGATGAACGATGTCGGCGAAGTGGCGATTGATTTACAAGATACTGGAAGGACGACAGGGGAGAATTGTCGCCGAGAAATATTTCATGTGAACGAACGTGCCCGATCGGAGAAAGATTCTGAGGACGGTGTCGATGTTGTACCACCGAAACCTAGTTCTGTTAATCTCGATATGAAATCAAAGCAACCAGTTATAGAAGTGGCCAACTTCGTCTGTGAGGTGAGAAGAGCTCGGAACCTCGTAGTACCTGAAGGAACTGACAGCTGA

Protein sequence

MQSSELDGDRRRMMNDVGEVAIDLQDTGRTTGENCRREIFHVNERARSEKDSEDGVDVVPPKPSSVNLDMKSKQPVIEVANFVCEVRRARNLVVPEGTDS

Homology

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BLAST of Csor.00g063480 vs. NCBI nr
Match: KAG6584087.1 (hypothetical protein SDJN03_20019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (505), Expect = 4.12e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MQSSELDGDRRRMMNDVGEVAIDLQDTGRTTGENCRREIFHVNERARSEKDSEDGVDVVP 60
           MQSSELDGDRRRMMNDVGEVAIDLQDTGRTTGENCRREIFHVNERARSEKDSEDGVDVVP
Sbjct: 1   MQSSELDGDRRRMMNDVGEVAIDLQDTGRTTGENCRREIFHVNERARSEKDSEDGVDVVP 60

Query: 61  PKPSSVNLDMKSKQPVIEVANFVCEVRRARNLVVPEGTDS 100
           PKPSSVNLDMKSKQPVIEVANFVCEVRRARNLVVPEGTDS
Sbjct: 61  PKPSSVNLDMKSKQPVIEVANFVCEVRRARNLVVPEGTDS 100

The following BLAST results are available for this feature:

BLAST of Csor.00g063480 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g063480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584087.1	4.12e-64	100.00	hypothetical protein SDJN03_20019, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g063480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g063480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g063480.m01	Csor.00g063480.m01	mRNA