Csor.00g062230 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g062230
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGibberellin-regulated protein 6-like
LocationCsor_Chr14: 2984456 .. 2985562 (-)
RNA-Seq ExpressionCsor.00g062230
SyntenyCsor.00g062230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCATGAGACGGTCCAAATCGAAGCAATGGAGACCCGCAAGCATATGAGCGACAACACTCGATTATTTCCCACCTTCTTCTTCCTTCCGCCCATTCTATTTATACCCACTGAGAATGAGGCCACAAACTCAGCACCCCGCTTTCCCTTTTCTGCTTTCCCTGTCTCTTCCATTTCAAGCTTCTTCTCTTTTAACTTACAATGGCGATGGCTAAGTTCGCCGCTGTCCTGCTCTTGGCTCTCATTGCGTTTTCCATGCTTCAAACCACTGTGAGACCTTCTTCTCCGTTGTCTTACTACTCTTATGCTCAGTCCCTTTCCTTTCGTCTTGACAGAACTTAACTCACTCTGTTTTTGTTTTGTGCTTCGATCTGTTTCTGTAGGTCATGGCTGGCAATGGACGTGGTGGTCGAAGCAGGGTAAAACTCTTTTTCTAGTTCTATGTTTGGTTTTGACTGGAAATCGGGGGTTTTCCATTGTGGCATTTTGTCGAACACCTTGTATGGTTGTGCTCACGTTTCGATTTGGTCTGTTCTTAATTCACTAATTTGATGTAGATCAGGCTTTTAAACACGTAAATCACTTTTTTGGCATTGCAACATTTTGTCGAACACTCCTGCTTCTCTGCTAACTTAAATCAGGCTTTAGAAATCTAAGATCGACAATTTGTTTTTACGGCATTTTGGGAAATACGTTGTGTTATTGTACTCACATTTTGTCGTTGGCTTTTTTCAGAACCCATACGGACCAGGGAGCGTCAAGATCTTCCGTAAGTATCCTCCTAATTCGAAATCCAAACAGTTTATGAGTCATTTTTGCGGCTCCTTTGGGTTGGATTTGTCTGGATTTGTGTCTGAAATGGGTGGTTATGAATAATTTACAGAATGCCCAAATCGGTGCGCCACTCGGTGCGGGAGGACACAATACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCCCCTGGCTACTACGGAAACAAAGCCGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAAAAAAACCAATTCATTAATCTCCATATCCATATCCATTTGA

mRNA sequence

ATGTGCCATGAGACGGTCCAAATCGAAGCAATGGAGACCCGCAAGCATATGAGCGACAACACTCGATTATTTCCCACCTTCTTCTTCCTTCCGCCCATTCTATTTATACCCACTGAGAATGAGGCCACAAACTCAGCACCCCGCTTTCCCTTTTCTGCTTTCCCTGTCTCTTCCATTTCAAGCTTCTTCTCTTTTAACTTACAATGGCGATGGCTAAGTTCGCCGCTGTCCTGCTCTTGGCTCTCATTGCGTTTTCCATGCTTCAAACCACTGTCATGGCTGGCAATGGACGTGGTGGTCGAAGCAGGAACCCATACGGACCAGGGAGCGTCAAGATCTTCCAATGCCCAAATCGGTGCGCCACTCGGTGCGGGAGGACACAATACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCCCCTGGCTACTACGGAAACAAAGCCGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAAAAAAACCAATTCATTAATCTCCATATCCATATCCATTTGA

Coding sequence (CDS)

ATGTGCCATGAGACGGTCCAAATCGAAGCAATGGAGACCCGCAAGCATATGAGCGACAACACTCGATTATTTCCCACCTTCTTCTTCCTTCCGCCCATTCTATTTATACCCACTGAGAATGAGGCCACAAACTCAGCACCCCGCTTTCCCTTTTCTGCTTTCCCTGTCTCTTCCATTTCAAGCTTCTTCTCTTTTAACTTACAATGGCGATGGCTAAGTTCGCCGCTGTCCTGCTCTTGGCTCTCATTGCGTTTTCCATGCTTCAAACCACTGTCATGGCTGGCAATGGACGTGGTGGTCGAAGCAGGAACCCATACGGACCAGGGAGCGTCAAGATCTTCCAATGCCCAAATCGGTGCGCCACTCGGTGCGGGAGGACACAATACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCCCCTGGCTACTACGGAAACAAAGCCGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAAAAAAACCAATTCATTAATCTCCATATCCATATCCATTTGA

Protein sequence

MCHETVQIEAMETRKHMSDNTRLFPTFFFLPPILFIPTENEATNSAPRFPFSAFPVSSISSFFSFNLQWRWLSSPLSCSWLSLRFPCFKPLSWLAMDVVVEAGTHTDQGASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKTNSLISISISI
Homology
[Close]
BLAST of Csor.00g062230 vs. NCBI nr
Match: KAG6580964.1 (hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374 bits (959), Expect = 1.59e-130
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MCHETVQIEAMETRKHMSDNTRLFPTFFFLPPILFIPTENEATNSAPRFPFSAFPVSSIS 60
           MCHETVQIEAMETRKHMSDNTRLFPTFFFLPPILFIPTENEATNSAPRFPFSAFPVSSIS
Sbjct: 1   MCHETVQIEAMETRKHMSDNTRLFPTFFFLPPILFIPTENEATNSAPRFPFSAFPVSSIS 60

Query: 61  SFFSFNLQWRWLSSPLSCSWLSLRFPCFKPLSWLAMDVVVEAGTHTDQGASRSSNAQIGA 120
           SFFSFNLQWRWLSSPLSCSWLSLRFPCFKPLSWLAMDVVVEAGTHTDQGASRSSNAQIGA
Sbjct: 61  SFFSFNLQWRWLSSPLSCSWLSLRFPCFKPLSWLAMDVVVEAGTHTDQGASRSSNAQIGA 120

Query: 121 PLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKTNSL 180
           PLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKTNSL
Sbjct: 121 PLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKTNSL 180

Query: 181 ISISISI 187
           ISISISI
Sbjct: 181 ISISISI 187

[Close]
BLAST of Csor.00g062230 vs. NCBI nr
Match: KAG7017706.1 (hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (303), Expect = 1.84e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 115 NAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNAL 174
           NAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNAL
Sbjct: 74  NAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNAL 133

Query: 175 KK 176
           KK
Sbjct: 134 KK 135

[Close]
BLAST of Csor.00g062230 vs. NCBI nr
Match: XP_022933447.1 (uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 3.62e-19
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 84  RFPCFKPLSWLAMDVVVEAGTHTDQGASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGS 143
           +F     LS +A+ +        +    R+ NAQ+GAPL AGGH+TTNHACS AK+AA S
Sbjct: 7   KFAAILILSLIALSMFETTVMAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAES 66

Query: 144 ACVCPLATTETKPCALATTTGRPRKEDPNALKKTN 178
           AC C   T ETK  ALATTTGR RKE PNAL+K N
Sbjct: 67  ACACRRVTMETKAFALATTTGRQRKEGPNALRKHN 101

[Close]
BLAST of Csor.00g062230 vs. NCBI nr
Match: KAG7022220.1 (hypothetical protein SDJN02_15950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.8 bits (216), Expect = 4.99e-19
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 112 RSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDP 171
           R+ NAQ+GAPL AGGH+TTNHACS AK+AA SAC C   T ETK  ALATTTGR RKE P
Sbjct: 9   RNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGP 68

Query: 172 NALKKTN 178
           NAL+K N
Sbjct: 69  NALRKHN 75

[Close]
BLAST of Csor.00g062230 vs. NCBI nr
Match: KAB5516379.1 (hypothetical protein DKX38_027027 [Salix brachista])

HSP 1 Score: 88.6 bits (218), Expect = 2.59e-18
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 0 

Query: 71  WLSSPLSCSWLSLRFPCFKPLSWLAMDV---VVEAGTHTDQGASRSSNAQIGAPLGAGGH 130
           WLS   S SWLSL FPC +P  W  M V    +   T+ D G SR+SN    A  GAG  
Sbjct: 42  WLSLLPSSSWLSLPFPCSRPWLWHPMGVEVTTITTRTNMDLGVSRASNVHHNARGGAGRP 101

Query: 131 NTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKTN 178
           +TT+HACSS +SAA SA   P      K CALAT TGRPRKED +AL++ +
Sbjct: 102 STTSHACSSVRSAARSASAFPQGIMGIKLCALATITGRPRKEDQSALEQAS 152

[Close]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match: A0A6J1EZT1 (uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.75e-19
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 84  RFPCFKPLSWLAMDVVVEAGTHTDQGASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGS 143
           +F     LS +A+ +        +    R+ NAQ+GAPL AGGH+TTNHACS AK+AA S
Sbjct: 7   KFAAILILSLIALSMFETTVMAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAES 66

Query: 144 ACVCPLATTETKPCALATTTGRPRKEDPNALKKTN 178
           AC C   T ETK  ALATTTGR RKE PNAL+K N
Sbjct: 67  ACACRRVTMETKAFALATTTGRQRKEGPNALRKHN 101

[Close]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match: A0A5N5JAZ8 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027027 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.25e-18
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 0 

Query: 71  WLSSPLSCSWLSLRFPCFKPLSWLAMDV---VVEAGTHTDQGASRSSNAQIGAPLGAGGH 130
           WLS   S SWLSL FPC +P  W  M V    +   T+ D G SR+SN    A  GAG  
Sbjct: 42  WLSLLPSSSWLSLPFPCSRPWLWHPMGVEVTTITTRTNMDLGVSRASNVHHNARGGAGRP 101

Query: 131 NTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKTN 178
           +TT+HACSS +SAA SA   P      K CALAT TGRPRKED +AL++ +
Sbjct: 102 STTSHACSSVRSAARSASAFPQGIMGIKLCALATITGRPRKEDQSALEQAS 152

[Close]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match: A0A2P2NHI3 (Gibberellin-regulated protein 6-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.93e-15
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 106 TDQGASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGR 165
           +DQG SR++NA   A  GA   +TT+ ACSSAKSAA S C CP      +PCALATT GR
Sbjct: 14  SDQGVSRATNAHHNARGGAARPSTTSPACSSAKSAAQSVCACPQGIMGIRPCALATTIGR 73

Query: 166 PRKEDPNALKKTNSLISIS 184
           PRKEDPNAL + ++L S S
Sbjct: 74  PRKEDPNALDQLHNLPSKS 92

[Close]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match: A0A4Y1R8Z0 (GAST1 protein homolog 4 OS=Prunus dulcis OX=3755 GN=Prudu_010274 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.44e-14
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 96  MDVVVEAGTHTDQGASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETK 155
           M+V+  A  H D GASR++NA   A   A   NTT+ ACSS ++AA S CVCP     TK
Sbjct: 10  MEVIRVAIMHMDLGASRATNAHHNARGDAARPNTTSPACSSVRNAAKSVCVCPQGIMGTK 69

Query: 156 PCALATTTGRPRKEDPNAL 174
            CALATTTGRP KEDP+AL
Sbjct: 70  LCALATTTGRPSKEDPSAL 88

[Close]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match: A0A2P5F726 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105740 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.92e-13
Identity = 47/75 (62.67%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 101 EAGTHTDQGASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALA 160
           EA  H D      SNA+  A   A  HNTTNHAC SAK+AA SA VC LAT  TK CALA
Sbjct: 26  EAEYHLD------SNARENAQGDAAKHNTTNHACFSAKNAATSAFVCLLATMATKLCALA 85

Query: 161 TTTGRPRKEDPNALK 175
           TTTGRPR+EDP+AL+
Sbjct: 86  TTTGRPREEDPSALE 94

The following BLAST results are available for this feature:
BLAST of Csor.00g062230 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g062230 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580964.11.59e-130100.00hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017706.11.84e-31100.00hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022933447.13.62e-1954.74uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata][more]
KAG7022220.14.99e-1971.64hypothetical protein SDJN02_15950, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAB5516379.12.59e-1850.45hypothetical protein DKX38_027027 [Salix brachista][more]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EZT11.75e-1954.74uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A5N5JAZ81.25e-1850.45Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027027 PE=4 SV=1[more]
A0A2P2NHI35.93e-1558.23Gibberellin-regulated protein 6-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A4Y1R8Z09.44e-1456.96GAST1 protein homolog 4 OS=Prunus dulcis OX=3755 GN=Prudu_010274 PE=4 SV=1[more]
A0A2P5F7262.92e-1362.67Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105740 PE=4 SV... [more]
BLAST of Csor.00g062230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g062230.m01Csor.00g062230.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane