Csor.00g061950 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g061950
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPatatin
LocationCsor_Chr03: 5531450 .. 5531809 (+)
RNA-Seq ExpressionCsor.00g061950
SyntenyCsor.00g061950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTGTCTGAGAAAATGGATGGTATTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACATTTGCAGTGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGA

mRNA sequence

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTGTCTGAGAAAATGGATGGTATTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACATTTGCAGTGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGA

Coding sequence (CDS)

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTGTCTGAGAAAATGGATGGTATTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACATTTGCAGTGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGA

Protein sequence

MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Homology
BLAST of Csor.00g061950 vs. NCBI nr
Match: KAG6603769.1 (hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247 bits (631), Expect = 9.99e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR
Sbjct: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

BLAST of Csor.00g061950 vs. NCBI nr
Match: XP_022977336.1 (uncharacterized protein LOC111477686 [Cucurbita maxima])

HSP 1 Score: 246 bits (627), Expect = 4.07e-82
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRS SEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

BLAST of Csor.00g061950 vs. NCBI nr
Match: XP_023544018.1 (uncharacterized protein LOC111803725 [Cucurbita pepo subsp. pepo] >KAG7033938.1 hypothetical protein SDJN02_03664, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (561), Expect = 3.03e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 15  MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 74
           MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT
Sbjct: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60

Query: 75  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 105

BLAST of Csor.00g061950 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 217 bits (553), Expect = 7.92e-71
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRS SEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA R
Sbjct: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RSD KGSFWL+SLTWKWKKRK NNGILPNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 119

BLAST of Csor.00g061950 vs. NCBI nr
Match: XP_011658506.1 (uncharacterized protein LOC105436036 [Cucumis sativus])

HSP 1 Score: 207 bits (526), Expect = 1.07e-66
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDG-IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
           MYKGMSRSRS SEKM G +APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RRSD +GSFWL+SLTWKWKKRKGNNG+LPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

BLAST of Csor.00g061950 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 246 bits (627), Expect = 1.97e-82
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRS SEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

BLAST of Csor.00g061950 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 5.19e-67
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDG-IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
           MYKGMSRSRS SEKM G +APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RRSD +GSFWL+SLTWKWKKRKGNNG+LPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

BLAST of Csor.00g061950 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 4.27e-66
Identity = 101/120 (84.17%), Postives = 105/120 (87.50%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDG-IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
           MYKGMSRSRS SEKM G +APLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RRSD KGSFWL+SLTWKWKKRK NNGILPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

BLAST of Csor.00g061950 vs. ExPASy TrEMBL
Match: A0A1S3B3D8 (uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 4.27e-66
Identity = 101/120 (84.17%), Postives = 105/120 (87.50%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDG-IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
           MYKGMSRSRS SEKM G +APLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119
           RRSD KGSFWL+SLTWKWKKRK NNGILPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

BLAST of Csor.00g061950 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 3.74e-65
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MY+G+SRS S SE+M  +APLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD---F 119
           RSD K SFWL+SL+WKWKKR+ NNGILPNICSAVELSKSNRFNGIPGF YRILK D   F
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHF 120

BLAST of Csor.00g061950 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 19  APLAIGTRGTVGSLVMKEIEYFTKFEV------ERHGSSQRISGDASR--RSDCKGSFWL 78
           AP+AIGTRGT+GSLV KEI+YF  F         R G+S+       +  RS  +   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 79  VSLTWKWKKRK---GNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD 117
               W+ KKR+   G     P++CSAVE+S  NR   +PGF+YRILK D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603769.19.99e-83100.00hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977336.14.07e-8299.16uncharacterized protein LOC111477686 [Cucurbita maxima][more]
XP_023544018.13.03e-72100.00uncharacterized protein LOC111803725 [Cucurbita pepo subsp. pepo] >KAG7033938.1 ... [more]
XP_038882225.17.92e-7187.39uncharacterized protein LOC120073447 [Benincasa hispida][more]
XP_011658506.11.07e-6684.17uncharacterized protein LOC105436036 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1IJL81.97e-8299.16uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686... [more]
A0A0A0KL845.19e-6784.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1[more]
A0A5D3CRM54.27e-6684.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B3D84.27e-6684.17uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=... [more]
A0A6J1EEE93.74e-6580.33uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335... [more]
Match NameE-valueIdentityDescription
AT4G21780.11.6e-1644.04unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35131:SF1EXPRESSED PROTEINcoord: 7..116
NoneNo IPR availablePANTHERPTHR35131EXPRESSED PROTEINcoord: 7..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g061950.m01Csor.00g061950.m01mRNA