Csor.00g061530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g061530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionProtein RALF-like 7
LocationCsor_Chr03: 5689993 .. 5691691 (-)
RNA-Seq ExpressionCsor.00g061530
SyntenyCsor.00g061530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGGCAATCGAATTACAGAATCTGTTTGGGCCCCCGCGAAAATAAGGATAGTTCAGAATGTGCCTCCAAGGAGAAGAAACGGGTTCATGCTGGCAAAATGGTTTGATTCTTACAAGCGGACCAGAATTATTGATGTTTCAGGATTATTGATGTTTCAGGGTTGCTGGTAGCCTTCATAGGTCAATAATAAATTGTACACAAAACTTGTTCATGTTCATTGTTCTTATTAATAAGGTTGATTCTTAATGTTCCTTTGTAATTTCCTTTGTCCATAGCAGCAAAATTTCAGAGCAATCTGTGCAGATTTATAATGGAGGCTTTAGCTTGATCTTAACTACTACCGATCGGAATAGCCCCAACTTCAGAATCTATCTTGACGAGTCTTCTAAAGAAAATTAAAAAGAAGTGTCATCTCGATCCAAATTTGTATCTCTTCAGCTTATTCTTAAGAACTTCAGAAAGGGAACCAATTTAAAACCTTAAAATCAGAGAAAATGGAAGAAATGTAGGCACCGATAGACGCAAACTACTGGGACATCAAAGCAGTTTGCCTGGAAGGTGACACAAAAAATTAATATGCGAGAAGGTTCTCATGAAAAGGCTAAACCCTATGCCGTCTCACTCATCTCCCCTTCTCATAATTAAACAAAACCAGAGATTAAAAAGATGAAAGAAACCAGATTAAGAAGGAAGAAACACAGATAAAAATATCAGAAAATGTAAGAAGTTCGGTAAGCAGATTCGTCGACGAAGATCCGATTAGATCTGAAACAACGACCGGCCAGATAACTTCTCTGGTTTGATTTATCTGCAGCCTCTTCGGCAGGTCAAGAACAAGGGAATCGCCCTTCTCTTGGTACAATGCAGACTCAAGAAACAGATCTCAAGAATCAAATTAAAAAAAACCTGAGCGGCGAACGGATTGGTGAAAATATGAAATCGTGATTAAGGAGGCTGCGGTGAGGAGTGGTTGCTATGAACCCTAGCCAGGCCATTTAATAGAAAAATTCACTGAACGGCAAAGGCGGATAGTACGAAAGATCGTGACCGTTGATCTCTCCGTGCGACGAGATAGGGTTTTCCACCAAATTAGACTCATTTGAATTTAAAATAATAATAATAATAATAATAATTTTACGCTGAATTAACCCAATAAATATTTTTATCAAGTATTATCAATTTATAATTCATTAAAAATATATAATAATATTTTTTAATGCATTTTCACTTTTAAAGAGTAAGTCAAAATCGACTAATTGACTCGCTTAAATCGCGTGGCTAATGGCAACCACAGAGTCCCAACAAAACTAACTAACAAAAGCCAAGTGATGGAGCCAAAAATAGAAGTGAAAGCAATACATGGTCCATGGAGGGTGGCTCGAAAGGCAATATAAGCTCAGATTCATAGCCACATTGTGCAGCCTTCATTCAAACCAAACCTCCAAACATCCAATCTTCCATACATCTTAGAAAATAAAATGGCAGCTTCCACCAAAATGTTTGCAATCTGCATCATTATGATGCTCGTTTCCTCATTTGTGGTGACCCCAGCAGGCGCAGAGTCTCTTGGTTATGGCGCCGTCGGTGCGGATGCAGGTGGAAAATGCACCGATGGGAAGTGCGAAACACTAGGAGATCCAGCCAACAATTATAACAGGGGATGTGAGGCCGATAAGATGTGCAGAGGCGGCTAG

mRNA sequence

ATGCAGGGGCAATCGAATTACAGAATCTGTTTGGGCCCCCGCGAAAATAAGGATAGTTCAGAATGTGCCTCCAAGGAGAAGAAACGGGTTCATGCTGGCAAAATGCCTCTTCGGCAGGTCAAGAACAAGGGAATCGCCCTTCTCTTGCCTTCATTCAAACCAAACCTCCAAACATCCAATCTTCCATACATCTTAGAAAATAAAATGGCAGCTTCCACCAAAATGTTTGCAATCTGCATCATTATGATGCTCGTTTCCTCATTTGTGGTGACCCCAGCAGGCGCAGAGTCTCTTGGTTATGGCGCCGTCGGTGCGGATGCAGGTGGAAAATGCACCGATGGGAAGTGCGAAACACTAGGAGATCCAGCCAACAATTATAACAGGGGATGTGAGGCCGATAAGATGTGCAGAGGCGGCTAG

Coding sequence (CDS)

ATGCAGGGGCAATCGAATTACAGAATCTGTTTGGGCCCCCGCGAAAATAAGGATAGTTCAGAATGTGCCTCCAAGGAGAAGAAACGGGTTCATGCTGGCAAAATGCCTCTTCGGCAGGTCAAGAACAAGGGAATCGCCCTTCTCTTGCCTTCATTCAAACCAAACCTCCAAACATCCAATCTTCCATACATCTTAGAAAATAAAATGGCAGCTTCCACCAAAATGTTTGCAATCTGCATCATTATGATGCTCGTTTCCTCATTTGTGGTGACCCCAGCAGGCGCAGAGTCTCTTGGTTATGGCGCCGTCGGTGCGGATGCAGGTGGAAAATGCACCGATGGGAAGTGCGAAACACTAGGAGATCCAGCCAACAATTATAACAGGGGATGTGAGGCCGATAAGATGTGCAGAGGCGGCTAG

Protein sequence

MQGQSNYRICLGPRENKDSSECASKEKKRVHAGKMPLRQVKNKGIALLLPSFKPNLQTSNLPYILENKMAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNRGCEADKMCRGG
Homology
BLAST of Csor.00g061530 vs. NCBI nr
Match: KAG6603811.1 (hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278 bits (710), Expect = 3.96e-94
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MQGQSNYRICLGPRENKDSSECASKEKKRVHAGKMPLRQVKNKGIALLLPSFKPNLQTSN 60
           MQGQSNYRICLGPRENKDSSECASKEKKRVHAGKMPLRQVKNKGIALLLPSFKPNLQTSN
Sbjct: 1   MQGQSNYRICLGPRENKDSSECASKEKKRVHAGKMPLRQVKNKGIALLLPSFKPNLQTSN 60

Query: 61  LPYILENKMAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLG 120
           LPYILENKMAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLG
Sbjct: 61  LPYILENKMAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLG 120

Query: 121 DPANNYNRGCEADKMCRGG 139
           DPANNYNRGCEADKMCRGG
Sbjct: 121 DPANNYNRGCEADKMCRGG 139

BLAST of Csor.00g061530 vs. NCBI nr
Match: KAA0058710.1 (protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 4.47e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 69  MAAST-KMFAICIIMMLVSSFVVTPAGAE-SLGYGAVGADAGGKCTDGKCETLGDPANNY 128
           MA++T K+ AI I M++V S +V+P  A  SL YGA+G D   KC+DG C+TL DPAN Y
Sbjct: 1   MASNTNKILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGY 60

Query: 129 NRGCEADKMCR 137
           NRGCE +  CR
Sbjct: 61  NRGCEPENDCR 71

BLAST of Csor.00g061530 vs. NCBI nr
Match: KAE8648222.1 (hypothetical protein Csa_023891, partial [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 5.87e-12
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 78  ICIIMMLVSSFVVTPAGAESLGYGAVG-ADAGGKCTDGKCETLGDPANNYNRGCEADKMC 137
           + + M++V S +  P  A SL YGA+G  DA  +C DGKCE LGDPANNY RGCE ++ C
Sbjct: 9   VMVAMIMVCSLMENPTNATSLDYGAIGKGDA--RCKDGKCEILGDPANNYTRGCEPEEHC 68

Query: 138 RGG 139
           R G
Sbjct: 69  RSG 69

BLAST of Csor.00g061530 vs. NCBI nr
Match: KAE8648219.1 (hypothetical protein Csa_018424, partial [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 6.02e-12
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 69  MAAST-KMFAICII-MMLVSSFVVTPAGAESLGYGAVG-ADAGGKCTDGKCETLGDPANN 128
           MA +T K  AI ++ M++V S +  P  A SL YGA+G  DA  +C DGKCE LGDPANN
Sbjct: 1   MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDA--RCKDGKCEILGDPANN 60

Query: 129 YNRGCEADKMCRGG 139
           Y RGCE ++ CR G
Sbjct: 61  YTRGCEPEEHCRSG 72

BLAST of Csor.00g061530 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_018501 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 6.33e-12
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 69  MAAST-KMFAICII-MMLVSSFVVTPAGAESLGYGAVG-ADAGGKCTDGKCETLGDPANN 128
           MA +T K  AI ++ M++V S +  P  A SL YGA+G  DA  +C DGKCE LGDPANN
Sbjct: 1   MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDA--RCKDGKCEILGDPANN 60

Query: 129 YNRGCEADKMCRGG 139
           Y RGCE ++ CR G
Sbjct: 61  YTRGCEPEEHCRSG 72

BLAST of Csor.00g061530 vs. ExPASy TrEMBL
Match: A0A5A7UUI8 (Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001660 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.16e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 69  MAAST-KMFAICIIMMLVSSFVVTPAGAE-SLGYGAVGADAGGKCTDGKCETLGDPANNY 128
           MA++T K+ AI I M++V S +V+P  A  SL YGA+G D   KC+DG C+TL DPAN Y
Sbjct: 1   MASNTNKILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGY 60

Query: 129 NRGCEADKMCR 137
           NRGCE +  CR
Sbjct: 61  NRGCEPENDCR 71

BLAST of Csor.00g061530 vs. ExPASy TrEMBL
Match: A0A0A0KJT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.34e-12
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 80  IIMMLVSSFVVTPAGAESLGYGAVG-ADAGGKCTDGKCETLGDPANNYNRGCEADKMCRG 139
           I M++  S +  P  A SLGYG +G  DA  +C DGKCE LGDPANNY RGCE ++ CR 
Sbjct: 14  IAMIMACSLIENPTNATSLGYGVIGKGDA--RCKDGKCEILGDPANNYTRGCEPEEHCRS 72

BLAST of Csor.00g061530 vs. ExPASy TrEMBL
Match: A0A0A0KLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.07e-12
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 69  MAAST-KMFAICII-MMLVSSFVVTPAGAESLGYGAVG-ADAGGKCTDGKCETLGDPANN 128
           MA +T K  AI ++ M++V S +  P  A SL YGA+G  DA  +C DGKCE LGDPANN
Sbjct: 1   MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDA--RCKDGKCEILGDPANN 60

Query: 129 YNRGCEADKMCRGG 139
           Y RGCE ++ CR G
Sbjct: 61  YTRGCEPEEHCRSG 72

BLAST of Csor.00g061530 vs. ExPASy TrEMBL
Match: A0A6J5WUY3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21375 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.83e-08
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 71  ASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNRGC 130
           A +K F +C + +LV S     A A+ +  GA+  D  G C + +C  +  P+N+YNRGC
Sbjct: 2   AMSKTFTLCFVALLVCSICSETANAKDISNGAIRHDQPGDCRESRC--MSPPSNSYNRGC 61

Query: 131 EADKMCRGG 139
           E  K CRGG
Sbjct: 62  EKGKECRGG 68

BLAST of Csor.00g061530 vs. ExPASy TrEMBL
Match: A0A6J5UBN0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20698 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.24e-07
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 71  ASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNRGC 130
           A +K F +C + +LV S     A A+ +  GA+  D  G C + +C  +  P+N+YNRGC
Sbjct: 2   AMSKTFTLCFVALLVCSISSETANAKDISNGAIRHDQPGDCRESRC--MSPPSNSYNRGC 61

Query: 131 EADKMCRGG 139
           E  K CRGG
Sbjct: 62  EKGKECRGG 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603811.13.96e-94100.00hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0058710.14.47e-1454.93protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [... [more]
KAE8648222.15.87e-1253.97hypothetical protein Csa_023891, partial [Cucumis sativus][more]
KAE8648219.16.02e-1254.05hypothetical protein Csa_018424, partial [Cucumis sativus][more]
KGN49664.16.33e-1254.05hypothetical protein Csa_018501 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7UUI82.16e-1454.93Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G... [more]
A0A0A0KJT52.34e-1255.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1[more]
A0A0A0KLD03.07e-1254.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1[more]
A0A6J5WUY38.83e-0840.58Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21375 PE=... [more]
A0A6J5UBN01.24e-0740.58Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20698 PE=3 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g061530.m01Csor.00g061530.m01mRNA