Csor.00g061420 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g061420
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 5737358 .. 5737756 (+)
RNA-Seq ExpressionCsor.00g061420
SyntenyCsor.00g061420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTGACGGTCTTCCTTTCTAAGGAACTCCTCCGTCATGGGTGGTCTCATATTCCATCGCCTTGTGTAGCAGCCTCGCTGCCATTACCACCTGGGACATGCCATGAGACGTACATTTCAATTTCTTCAATGCCTTGTTTTGACAATTTTATTGATGTTGTGTTATTTGCTGTGTTTATGTGACGGGGGATTTATGATCCAATCCCTTACTAAATTTGGAGCGAACACGTTATGTTCGTATAGTGCCAAAGTTAACGTCACAGAGTAATTCCGGTTGATGTTGATGGCTCCTTTGGAGCCTCCATCGGCTGCTGGTCTCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGAGACCTATATTCTTAGTTAA

mRNA sequence

ATGACGTTGACGGTCTTCCTTTCTAAGGAACTCCTCCGTCATGGGTGGTCTCATATTCCATCGCCTTGTGTAGCAGCCTCGCTGCCATTACCACCTGGGACATGCCATGAGACAGTAATTCCGGTTGATGTTGATGGCTCCTTTGGAGCCTCCATCGGCTGCTGGTCTCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGAGACCTATATTCTTAGTTAA

Coding sequence (CDS)

ATGACGTTGACGGTCTTCCTTTCTAAGGAACTCCTCCGTCATGGGTGGTCTCATATTCCATCGCCTTGTGTAGCAGCCTCGCTGCCATTACCACCTGGGACATGCCATGAGACAGTAATTCCGGTTGATGTTGATGGCTCCTTTGGAGCCTCCATCGGCTGCTGGTCTCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGAGACCTATATTCTTAGTTAA

Protein sequence

MTLTVFLSKELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGCWSHIPLPCGAALLPLLLGTGHETYILS
Homology
BLAST of Csor.00g061420 vs. NCBI nr
Match: KAG6603822.1 (hypothetical protein SDJN03_04431, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (446), Expect = 1.05e-55
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MTLTVFLSKELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGCWSHIPL 60
          MTLTVFLSKELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGCWSHIPL
Sbjct: 1  MTLTVFLSKELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGCWSHIPL 60

Query: 61 PCGAALLPLLLGTGHETYILS 81
          PCGAALLPLLLGTGHETYILS
Sbjct: 61 PCGAALLPLLLGTGHETYILS 81

BLAST of Csor.00g061420 vs. NCBI nr
Match: KGN49921.1 (hypothetical protein Csa_000564 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 3.54e-07
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 6  FLSKELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGC 54
          FL K++LR GWSHIPSPC AASL LP  T HET I +     +GA+  C
Sbjct: 39 FLFKDVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSFTRYGANALC 87

BLAST of Csor.00g061420 vs. NCBI nr
Match: XP_023640402.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111831102 [Capsella rubella])

HSP 1 Score: 53.1 bits (126), Expect = 5.92e-07
Identity = 29/46 (63.04%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 41 PVDVDGSFGASIGCW-----SHIPLPCGAALLPLLLGTGHETYILS 81
          P DVDG+ G  +  W     SHIPLPCGAALL L  GTGHE YILS
Sbjct: 10 PYDVDGALGL-LRLWHLLXGSHIPLPCGAALLLLPFGTGHEFYILS 54

BLAST of Csor.00g061420 vs. NCBI nr
Match: KAG7643231.1 (hypothetical protein ISN44_As02g030670 [Arabidopsis suecica])

HSP 1 Score: 49.7 bits (117), Expect = 7.82e-06
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 40 IPVDVDGSFG----ASIGCWSHIPLPCGAALLPLLLGTGHETYI 79
          +P+DVDG+ G      +   SHIPLPCGAA L L  GTGHE YI
Sbjct: 1  MPMDVDGALGLLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

BLAST of Csor.00g061420 vs. NCBI nr
Match: NP_181118.1 (transmembrane protein [Arabidopsis thaliana] >AAD15440.1 unknown protein [Arabidopsis thaliana] >AEC09156.1 transmembrane protein [Arabidopsis thaliana] >KAG7638618.1 hypothetical protein ISN45_At02g030420 [Arabidopsis thaliana x Arabidopsis arenosa] >OAP11093.1 hypothetical protein AXX17_AT2G32400 [Arabidopsis thaliana])

HSP 1 Score: 49.7 bits (117), Expect = 8.57e-06
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 40 IPVDVDGSFG----ASIGCWSHIPLPCGAALLPLLLGTGHETYI 79
          +P+DVDG+ G      +   SHIPLPCGAA L L  GTGHE YI
Sbjct: 1  MPMDVDGALGLLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

BLAST of Csor.00g061420 vs. ExPASy TrEMBL
Match: A0A0A0KQD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140470 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.71e-07
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 6  FLSKELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGC 54
          FL K++LR GWSHIPSPC AASL LP  T HET I +     +GA+  C
Sbjct: 39 FLFKDVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSFTRYGANALC 87

BLAST of Csor.00g061420 vs. ExPASy TrEMBL
Match: Q9ZQP7 (Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=At2g35750 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.15e-06
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 40 IPVDVDGSFG----ASIGCWSHIPLPCGAALLPLLLGTGHETYI 79
          +P+DVDG+ G      +   SHIPLPCGAA L L  GTGHE YI
Sbjct: 1  MPMDVDGALGLLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

BLAST of Csor.00g061420 vs. ExPASy TrEMBL
Match: A0A178W193 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g32400 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.15e-06
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 40 IPVDVDGSFG----ASIGCWSHIPLPCGAALLPLLLGTGHETYI 79
          +P+DVDG+ G      +   SHIPLPCGAA L L  GTGHE YI
Sbjct: 1  MPMDVDGALGLLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

BLAST of Csor.00g061420 vs. ExPASy TrEMBL
Match: A0A654F9U1 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS10026 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.87e-06
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 40 IPVDVDGSFG----ASIGCWSHIPLPCGAALLPLLLGTGHETYI 79
          +P+DVDG+ G      +   SHIPLPCGAA L L  GTGHE YI
Sbjct: 1  MPMDVDGALGLLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

BLAST of Csor.00g061420 vs. ExPASy TrEMBL
Match: A0A067GPY0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039463mg PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.11e-05
Identity = 27/52 (51.92%), Postives = 30/52 (57.69%), Query Frame = 0

Query: 10 ELLRHGWSHIPSPCVAASLPLPPGTCHETVIPVDVDGSFGASIGCWSHIPLP 61
          ELL  G SHIPSPC AA LPLP G CHET I          SI   + +P+P
Sbjct: 23 ELLHLGKSHIPSPCGAALLPLPFGNCHETYI-------LSFSIVLMNSVPIP 67

BLAST of Csor.00g061420 vs. TAIR 10
Match: AT2G35750.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 40 IPVDVDGSFG----ASIGCWSHIPLPCGAALLPLLLGTGHETYI 80
          +P+DVDG+ G      +   SHIPLPCGAA L L  GTGHE YI
Sbjct: 1  MPMDVDGALGLLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603822.11.05e-55100.00hypothetical protein SDJN03_04431, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49921.13.54e-0757.14hypothetical protein Csa_000564 [Cucumis sativus][more]
XP_023640402.15.92e-0763.04LOW QUALITY PROTEIN: uncharacterized protein LOC111831102 [Capsella rubella][more]
KAG7643231.17.82e-0656.82hypothetical protein ISN44_As02g030670 [Arabidopsis suecica][more]
NP_181118.18.57e-0656.82transmembrane protein [Arabidopsis thaliana] >AAD15440.1 unknown protein [Arabid... [more]
Match NameE-valueIdentityDescription
A0A0A0KQD91.71e-0757.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140470 PE=4 SV=1[more]
Q9ZQP74.15e-0656.82Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=At2g35750 PE=4 SV=1[more]
A0A178W1934.15e-0656.82Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g32400 PE=4 ... [more]
A0A654F9U14.87e-0656.82Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS10026 PE=4 S... [more]
A0A067GPY01.11e-0551.92Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039463mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G35750.11.0e-0656.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g061420.m01Csor.00g061420.m01mRNA