Csor.00g060500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g060500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	WD_REPEATS_REGION domain-containing protein
Location	Csor_Chr03: 6181207 .. 6183066 (+)
RNA-Seq Expression	Csor.00g060500
Synteny	Csor.00g060500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTAAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACCAGATAATTCTCGACCGTGGATCAGTGGACGCCGATGATGATATGGCTGTGTCGGTGCCGTTGCCGGTCAGGTAAAATTTTTTATTTGGGTAACTGGCGGCGGAGCAAGGGATTGCTTGCATTTCAATTTAGCAATTTCGTGTGTTTGAAGTTAATGTATTCGGTTTTACAGTTTGGTTTTTATAGTCTGATAGACGTGTAATATATACTTGGATAATAGAAGAATTTATAATTTGGTGTGTAAGAAATTTCTCGTGTCCGGACTTTTTTCAATTATTTTAATATTAATAAAAAATAAAAAATAACTCGGGTGGCACCATTAGAGAGGTTTTGATTTTCCGTTTATACTGAGAATGGAGAGCGAGTGAAATTTTTTCGCTTTAGATAAGTGGGATGGGAACGAAATTATGCTCTTCCTCCTTATCTTTGTCCAATTTTATGTCCCGCTTAATTTAATATAAATATAATTTCAATATTAGCTAATTTTCGGATTCTAAATAAAATTAAAACTATATTATAAATTTATTTTAATGGTTAAAGACGGTGGTGTAATATTAAAATTTAAAATTTTAAGAATAGTGCCGGTAGAATTTATTATATTATATTTGCTTGTCAAATATTTCTATTTATTATGATTTTTAAACATTTTTTTAATAAACATTCTAGGGAAAATTGAAAGTTTTTAAATAACTATATATTTTAAAAAACGAATAATAAAAGGGAAAAAAATGATATGACGGGAGGAGTTCGATTCCCCCACAAATTCTTCTTAAAAGGAAATAGGTGGCAGAGAAGAGGACGAGAAGACTTTCTTATATACATCTCTAATCACATGTCTAAAAAAAACAAATTTATAAATTTTAATTTTAAATTTAATAAAATTCATCTTACAAAAAGGTGTAGTGTGAGATCTCATCGGGTTTGAGAGGGAACTAGAATTTCTTGTAAGGATGTGGAAACTTTTTGGTAACGTACTTGTTTTAAAATCTTGAGGGGAAGCTCAAGAACAATATCTAAGTGGTGGGCTTGAGTGGTTACAAATTGTATCCGACTCAGATATAGGGTATTGTGTGAGTGAGGATGTTGGTCTTTAGGGGGAGTGAATTATGAGATCCCACATCGATTGGAAAGCGGAACGAAACATTTCTTACTCGGGCGTGGAAACCTTTTCATCATAGTAGACGCGTTTTAAAATCATACGTAGCTAGCCAATATAGCCAAAGCGGACAATATTGGCTAGCGATGGATTGGAGTTATTACGAATTATATAAGAGACACATACTGGATAATGTACCGAGTAATAGGTGGAAGAAAAGGGAGGGGTTGTTGCGGAAAGAGCACGGAGGAATATGGGCTGCAGAGAGTGTGAGCTGTGATCAAAAGCAGCAGGCAAGGGAAGGGAGATTTGATGCTTTGATAAGTGTCCAAATTGGAAATGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTTAGTAGTAAAGAACATTACGTACTGGAAGGCTGAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTGAATTTGAGTGTACATACCCACCAGCCATGA

mRNA sequence

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTAAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACCAGATAATTCTCGACCGTGGATCAGTGGACGCCGATGATGATATGGCTGTGTCGGTGCCGTTGCCGGTCAGGTGGAAGAAAAGGGAGGGGTTGTTGCGGAAAGAGCACGGAGGAATATGGGCTGCAGAGAGTGTGAGCTGTGATCAAAAGCAGCAGGCAAGGGAAGGGAGATTTGATGCTTTGATAAGTGTCCAAATTGGAAATGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTTAGTAGTAAAGAACATTACGTACTGGAAGGCTGAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTGAATTTGAGTGTACATACCCACCAGCCATGA

Coding sequence (CDS)

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTAAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACCAGATAATTCTCGACCGTGGATCAGTGGACGCCGATGATGATATGGCTGTGTCGGTGCCGTTGCCGGTCAGGTGGAAGAAAAGGGAGGGGTTGTTGCGGAAAGAGCACGGAGGAATATGGGCTGCAGAGAGTGTGAGCTGTGATCAAAAGCAGCAGGCAAGGGAAGGGAGATTTGATGCTTTGATAAGTGTCCAAATTGGAAATGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTTAGTAGTAAAGAACATTACGTACTGGAAGGCTGAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTGAATTTGAGTGTACATACCCACCAGCCATGA

Protein sequence

MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSVPLPVRWKKREGLLRKEHGGIWAAESVSCDQKQQAREGRFDALISVQIGNEKKQKGRRGWMLVVKNITYWKAEKALKMFMDPQLNLSVHTHQP

Homology

[Close]

BLAST of Csor.00g060500 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419 bits (1078), Expect = 5.67e-148
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF 60
           MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF
Sbjct: 1   MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF 60

Query: 61  QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSVPLPV 120
           QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSVPLPV
Sbjct: 61  QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSVPLPV 120

Query: 121 RWKKREGLLRKEHGGIWAAESVSCDQKQQAREGRFDALISVQIGNEKKQKGRRGWMLVVK 180
           RWKKREGLLRKEHGGIWAAESVSCDQKQQAREGRFDALISVQIGNEKKQKGRRGWMLVVK
Sbjct: 121 RWKKREGLLRKEHGGIWAAESVSCDQKQQAREGRFDALISVQIGNEKKQKGRRGWMLVVK 180

Query: 181 NITYWKAEKALKMFMDPQLNLSVHTHQP 208
           NITYWKAEKALKMFMDPQLNLSVHTHQP
Sbjct: 181 NITYWKAEKALKMFMDPQLNLSVHTHQP 208

[Close]

BLAST of Csor.00g060500 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 174 bits (441), Expect = 7.96e-52
Identity = 101/134 (75.37%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVD- 120
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD++ILDRGSVD 
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

[Close]

BLAST of Csor.00g060500 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 2.90e-39
Identity = 82/113 (72.57%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MAEKTRRVPGKAKL---------RGDDMK-NSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K          R DD K N+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIIL 101
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD  ++
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVI 113

[Close]

BLAST of Csor.00g060500 vs. NCBI nr
Match: TKS00259.1 (hypothetical protein D5086_0000184720 [Populus alba])

HSP 1 Score: 88.2 bits (217), Expect = 2.11e-18
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDQII----LDRGSVDADDDMAVSVPL 118
           SEAVADCIEFIKK + +D + I        S DA  +MA+ VP+
Sbjct: 88  SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDATGEMAMPVPV 129

[Close]

BLAST of Csor.00g060500 vs. NCBI nr
Match: PNT36221.1 (hypothetical protein POPTR_005G114500 [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 9.39e-18
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDQIIL--DRGSVDADDDMAVSVPLPV 120
           SEAVADCIEFIKK + +D + I      S   DD   +++P+PV
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPV 147

[Close]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 2.10e-52
Identity = 101/134 (75.37%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVD- 120
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD++ILDRGSVD 
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

[Close]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.40e-39
Identity = 82/113 (72.57%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MAEKTRRVPGKAKL---------RGDDMK-NSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K          R DD K N+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIIL 101
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD  ++
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVI 113

[Close]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL
Match: A0A4U5PT50 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.02e-18
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDQII----LDRGSVDADDDMAVSVPL 118
           SEAVADCIEFIKK + +D + I        S DA  +MA+ VP+
Sbjct: 88  SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDATGEMAMPVPV 129

[Close]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL
Match: B9MXG5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.54e-18
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDQIIL--DRGSVDADDDMAVSVPLPV 120
           SEAVADCIEFIKK + +D + I      S   DD   +++P+PV
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPV 147

[Close]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL
Match: A0A5N5MNX3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_007703 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.09e-17
Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +M  ALSKAT++ +AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMFSALSKATHNAAAGSSPDHLVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSD-DQIILDRGSVDADDDMAVSVPLPV 120
           SEAVADCIEFIK+ + +D D+I  D  +  +  +MA ++P+PV
Sbjct: 88  SEAVADCIEFIKRSSLTDHDEINRDSTASSSSSEMA-AMPVPV 128

The following BLAST results are available for this feature:

BLAST of Csor.00g060500 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g060500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603914.1	5.67e-148	100.00	hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49339.2	7.96e-52	75.37	hypothetical protein Csa_003207 [Cucumis sativus]	[more]
KAA0025678.1	2.90e-39	72.57	Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1...	[more]
TKS00259.1	2.11e-18	50.96	hypothetical protein D5086_0000184720 [Populus alba]	[more]
PNT36221.1	9.39e-18	50.00	hypothetical protein POPTR_005G114500 [Populus trichocarpa]	[more]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN3	2.10e-52	75.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1	[more]
A0A5A7SHP0	1.40e-39	72.57	Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A4U5PT50	1.02e-18	50.96	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1	[more]
B9MXG5	4.54e-18	50.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 ...	[more]
A0A5N5MNX3	1.09e-17	48.54	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_007703 PE=4 SV=1	[more]

BLAST of Csor.00g060500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR35111:SF1	EXPRESSED PROTEIN	coord: 19..119
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 19..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g060500.m01	Csor.00g060500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:2000031	regulation of salicylic acid mediated signaling pathway
biological_process	GO:0010337	regulation of salicylic acid metabolic process