Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACTGTCATCATCCTCTTTAGTTCGAGAATTGCCGGTTAATCGTTTGAATTCGTTTTGTAAACCGGCGAATCCACGGACGGCAGTGAAGATTCAGGCCATGGCAAAGGAAGGAAGCGAGAGCGAAGGGGGCATTGCAGAGACGTTGGCAATAGCCGGGGGGTTAGTGGCGACCCCAGTGATCGGTTGGTCGCTGTACACCCTGAAAACAACCGGGTGCGGGCTGCCGCCGGGGCCAGGCGGGTCACTCGGCGCATTGGAAGGCGTCAGCTACTTGGCGGTGGTGGGCATCGTGGGTTGGTCGGCATACACGAAGACGAAAACTGGATCTGGCCTGCCCAACGGCCCTTTTGGGCTATTGGGCGCGGTGGAAGGTCTGTCGTACTTGAGTTTATTGGCTATCTTGGTCGTTTTTGGGTTGCAATACTTCGAACAGGGGTACATCCCCGGCCCTCTTCCGGCTGATCAGTGCTTTGGTTGA
mRNA sequence
ATGCTACTGTCATCATCCTCTTTAGTTCGAGAATTGCCGGTTAATCGTTTGAATTCGTTTTGTAAACCGGCGAATCCACGGACGGCAGTGAAGATTCAGGCCATGGCAAAGGAAGGAAGCGAGAGCGAAGGGGGCATTGCAGAGACGTTGGCAATAGCCGGGGGGTTAGTGGCGACCCCAGTGATCGGTTGGTCGCTGTACACCCTGAAAACAACCGGGTGCGGGCTGCCGCCGGGGCCAGGCGGGTCACTCGGCGCATTGGAAGGCGTCAGCTACTTGGCGGTGGTGGGCATCGTGGGTTGGTCGGCATACACGAAGACGAAAACTGGATCTGGCCTGCCCAACGGCCCTTTTGGGCTATTGGGCGCGGTGGAAGGTCTGTCGTACTTGAGTTTATTGGCTATCTTGGTCGTTTTTGGGTTGCAATACTTCGAACAGGGGTACATCCCCGGCCCTCTTCCGGCTGATCAGTGCTTTGGTTGA
Coding sequence (CDS)
ATGCTACTGTCATCATCCTCTTTAGTTCGAGAATTGCCGGTTAATCGTTTGAATTCGTTTTGTAAACCGGCGAATCCACGGACGGCAGTGAAGATTCAGGCCATGGCAAAGGAAGGAAGCGAGAGCGAAGGGGGCATTGCAGAGACGTTGGCAATAGCCGGGGGGTTAGTGGCGACCCCAGTGATCGGTTGGTCGCTGTACACCCTGAAAACAACCGGGTGCGGGCTGCCGCCGGGGCCAGGCGGGTCACTCGGCGCATTGGAAGGCGTCAGCTACTTGGCGGTGGTGGGCATCGTGGGTTGGTCGGCATACACGAAGACGAAAACTGGATCTGGCCTGCCCAACGGCCCTTTTGGGCTATTGGGCGCGGTGGAAGGTCTGTCGTACTTGAGTTTATTGGCTATCTTGGTCGTTTTTGGGTTGCAATACTTCGAACAGGGGTACATCCCCGGCCCTCTTCCGGCTGATCAGTGCTTTGGTTGA
Protein sequence
MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Homology
BLAST of Csor.00g059810 vs. NCBI nr
Match:
KAG6603983.1 (hypothetical protein SDJN03_04592, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 319 bits (818), Expect = 6.50e-110
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP
Sbjct: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. NCBI nr
Match:
XP_022950150.1 (uncharacterized protein LOC111453326 [Cucurbita moschata] >XP_023544302.1 uncharacterized protein LOC111803919 [Cucurbita pepo subsp. pepo] >KAG7034154.1 hypothetical protein SDJN02_03881, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 317 bits (812), Expect = 5.35e-109
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSLVR LPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP
Sbjct: 1 MLLSSSSLVRALPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. NCBI nr
Match:
XP_022978571.1 (uncharacterized protein LOC111478511 [Cucurbita maxima])
HSP 1 Score: 312 bits (800), Expect = 3.62e-107
Identity = 157/160 (98.12%), Postives = 157/160 (98.12%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSLVR LPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP
Sbjct: 1 MLLSSSSLVRALPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSVYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPA QCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPAAQCFG 160
BLAST of Csor.00g059810 vs. NCBI nr
Match:
XP_038882163.1 (uncharacterized protein LOC120073396 [Benincasa hispida])
HSP 1 Score: 305 bits (781), Expect = 2.86e-104
Identity = 151/160 (94.38%), Postives = 155/160 (96.88%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSL+R LPVNRLN CKPANPRT VK+QAMAKEGSESEGGIAET+AIAGGLVATP
Sbjct: 1 MLLSSSSLLRSLPVNRLNLACKPANPRTRVKVQAMAKEGSESEGGIAETVAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEG+SYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGISYLAVVGIVGWSLYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. NCBI nr
Match:
XP_008440700.1 (PREDICTED: uncharacterized protein LOC103485040 [Cucumis melo] >KAA0036236.1 uncharacterized protein E6C27_scaffold18G00340 [Cucumis melo var. makuwa] >TYK12631.1 uncharacterized protein E5676_scaffold255G002180 [Cucumis melo var. makuwa])
HSP 1 Score: 301 bits (771), Expect = 9.57e-103
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSL+R LPV R N CKPANPRT VK+QAMAKEGSESEGGIAET+AIAGGLVATP
Sbjct: 1 MLLSSSSLLRSLPVTRQNLACKPANPRTGVKVQAMAKEGSESEGGIAETVAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSLYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. ExPASy TrEMBL
Match:
A0A6J1GEW2 (uncharacterized protein LOC111453326 OS=Cucurbita moschata OX=3662 GN=LOC111453326 PE=4 SV=1)
HSP 1 Score: 317 bits (812), Expect = 2.59e-109
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSLVR LPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP
Sbjct: 1 MLLSSSSLVRALPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. ExPASy TrEMBL
Match:
A0A6J1IN27 (uncharacterized protein LOC111478511 OS=Cucurbita maxima OX=3661 GN=LOC111478511 PE=4 SV=1)
HSP 1 Score: 312 bits (800), Expect = 1.75e-107
Identity = 157/160 (98.12%), Postives = 157/160 (98.12%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSLVR LPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP
Sbjct: 1 MLLSSSSLVRALPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSVYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPA QCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPAAQCFG 160
BLAST of Csor.00g059810 vs. ExPASy TrEMBL
Match:
A0A5A7T239 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002180 PE=4 SV=1)
HSP 1 Score: 301 bits (771), Expect = 4.63e-103
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSL+R LPV R N CKPANPRT VK+QAMAKEGSESEGGIAET+AIAGGLVATP
Sbjct: 1 MLLSSSSLLRSLPVTRQNLACKPANPRTGVKVQAMAKEGSESEGGIAETVAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSLYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. ExPASy TrEMBL
Match:
A0A1S3B1A0 (uncharacterized protein LOC103485040 OS=Cucumis melo OX=3656 GN=LOC103485040 PE=4 SV=1)
HSP 1 Score: 301 bits (771), Expect = 4.63e-103
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSL+R LPV R N CKPANPRT VK+QAMAKEGSESEGGIAET+AIAGGLVATP
Sbjct: 1 MLLSSSSLLRSLPVTRQNLACKPANPRTGVKVQAMAKEGSESEGGIAETVAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSLYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. ExPASy TrEMBL
Match:
A0A0A0KKC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502600 PE=4 SV=1)
HSP 1 Score: 298 bits (763), Expect = 7.69e-102
Identity = 148/160 (92.50%), Postives = 153/160 (95.62%), Query Frame = 0
Query: 1 MLLSSSSLVRELPVNRLNSFCKPANPRTAVKIQAMAKEGSESEGGIAETLAIAGGLVATP 60
MLLSSSSL++ LPVNR N CKPANPRT VK+QAMAKEGSESEGGIAET+AIAGGLVATP
Sbjct: 1 MLLSSSSLLQSLPVNRPNLACKPANPRTGVKVQAMAKEGSESEGGIAETVAIAGGLVATP 60
Query: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSAYTKTKTGSGLPNGPFGL 120
VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWS YTKTKTGSGLPNGPFGL
Sbjct: 61 VIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSLYTKTKTGSGLPNGPFGL 120
Query: 121 LGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 160
LGAVEGLSYLSLLAILVVFGLQY +QGYIPGPLPADQCFG
Sbjct: 121 LGAVEGLSYLSLLAILVVFGLQYLDQGYIPGPLPADQCFG 160
BLAST of Csor.00g059810 vs. TAIR 10
Match:
AT3G50685.1 (unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )
HSP 1 Score: 209.1 bits (531), Expect = 2.5e-54
Identity = 101/130 (77.69%), Postives = 115/130 (88.46%), Query Frame = 0
Query: 31 KIQAMAKEGSESEGGIAETLAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGV 90
++ A AK+ +++ GG ET AIAG LV+TPVIGWSLYTLKTTGCGLPPGP G +GALEGV
Sbjct: 30 RVVAKAKDNTDT-GGFLETAAIAGSLVSTPVIGWSLYTLKTTGCGLPPGPAGLIGALEGV 89
Query: 91 SYLAVVGIVGWSAYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIP 150
SYL VVGIVGWS YTKTKTGSGLPNGPFGLLGAVEGLSYLS+LAILVVFG+Q+ + G +P
Sbjct: 90 SYLVVVGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSVLAILVVFGIQFLDNGSVP 149
Query: 151 GPLPADQCFG 161
GPLP+DQCFG
Sbjct: 150 GPLPSDQCFG 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6603983.1 | 6.50e-110 | 100.00 | hypothetical protein SDJN03_04592, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022950150.1 | 5.35e-109 | 99.38 | uncharacterized protein LOC111453326 [Cucurbita moschata] >XP_023544302.1 unchar... | [more] |
XP_022978571.1 | 3.62e-107 | 98.13 | uncharacterized protein LOC111478511 [Cucurbita maxima] | [more] |
XP_038882163.1 | 2.86e-104 | 94.38 | uncharacterized protein LOC120073396 [Benincasa hispida] | [more] |
XP_008440700.1 | 9.57e-103 | 93.75 | PREDICTED: uncharacterized protein LOC103485040 [Cucumis melo] >KAA0036236.1 unc... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1GEW2 | 2.59e-109 | 99.38 | uncharacterized protein LOC111453326 OS=Cucurbita moschata OX=3662 GN=LOC1114533... | [more] |
A0A6J1IN27 | 1.75e-107 | 98.13 | uncharacterized protein LOC111478511 OS=Cucurbita maxima OX=3661 GN=LOC111478511... | [more] |
A0A5A7T239 | 4.63e-103 | 93.75 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B1A0 | 4.63e-103 | 93.75 | uncharacterized protein LOC103485040 OS=Cucumis melo OX=3656 GN=LOC103485040 PE=... | [more] |
A0A0A0KKC0 | 7.69e-102 | 92.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502600 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G50685.1 | 2.5e-54 | 77.69 | unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bac... | [more] |