Csor.00g059570 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g059570
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Translation initiation factor IF-2, putative isoform 1
Location	Csor_Chr03: 6584646 .. 6587163 (-)
RNA-Seq Expression	Csor.00g059570
Synteny	Csor.00g059570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCGAAAGGCGAAGAAGTCAGTTAAGAAGTCCAGCCCTTCACCTATTCGAGAAGCAAAGGATGGATCAGCGAATGAGCTAAAAAGTGAGGATCAAGCATCATTGGTGTCCGACGAGGATGGTATGTTGAAATTCGCAGTAATTCCGATTCTTTTTCCCGAAGCCGGAACTTGATTTAAGGAAGAAAAAATTTTCTGTTAAAATTGTCCGAGGATTTAACATAATTGTTGCGCTGCTTTCGCCATTGTTTATGTTTAGTTGAACGGCATGCTACTGCAATCCGTGCCATTCGGGATGTGGAAATCGAGCGTTTGATTACTGAATTGCGGTTGCTGCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTTGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGACGAGGCGAACAAGGAGAAATTGAAGTGCAATGGAAGGATACAGAGGATGAATTACACACTAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTGCATCGCCTGTCCACAGCTTACCCTAACTGCTCTGCCGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGGTATCTGTAGATTTTGGATTTTGGTGCGTAAAACTAATTGGTAAGTACACCTGTTTCATTGCTGTAACTCATCTTCTTTCTCTACTGGTGGCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATTCCGAACTTCGTAAGTAATTTTACATTTGATATCTTAAATTGTTTGCTAGAAATCCTTAAATTTAGACCAGTAGAATGAGTGATACCTTGTGAGCTCACAAAGTATGATTTAGTTTGTCTATATCTTTTGTTTCATGTTATTGTTTTGTGGAAGAATGCCTTACTCGTCTTCACGAGAAATAAAACCGTGTACGCTTTGGTATTGACTGATATATTTATTGACAATTCTTGCTTTTTAGGCTTTGGAGGAACCCTCAGATAACATGGTGCTTGGCATGCCAGACCTTCTCCAAACTCCTGGGGTTCGTATCTTCATGGTTTTTTGCACATCGCTTATTAAGTTAGCCGTTTCATGTTAGTACTCTATAATTGTCTGTTATGCCATTTTTTCATTATTTGGTGGTTCTCTTGACTCAAATTATTTAGGCACATATACGTTCCGGGTCAAAGGAATAGAATTACTGTAGTGGTAGCGTGTCTGCAATCAATTATTGATGTTTTGTTTCAAATAATTAAGGGTGTCTAAGCGAACTTGTGTGTATAAACTAATTATAAACAATTATCTAGCTTAATATTGAACTTCAATAAGTTCGGATACACGATGTCTTTGTCTTGGTAATGAGTTGGAATCTTGTTGCTGACCATCGGTTAGACTAGACTTAGTGGCTAACAAGGTCCACTATATAAATAGTGTAAACGGCTTAGAGAAAATGAGTTCAACACATAGTGGCCATCTTAGCTACGTAAGATTTAATATCCTGCAAGTATTTTTGATAGCCAATTATAATAGGTTCAGACGATTTTCCTGTTAGGTATAGTTGAAGCTCACAAACTCACCTCGATAAGATTTGTACTTTGTATACTCCGGTAAATTGTAAATGATCTTTATTACTGGTATTGGTTTTACAAAAGAATGCTATTTGAAAATACTAGTCATGGAACGTTGGATTATAGCTGAGTCTTCAGTGGAAATGTTCCTATGGATATCAATACCATGATAAAGGTTGTTCATATTCTTAAATGTACTCTGCTATCATCTGATCAAAGTTATCAACTGGAGGTGAAAAATCAATTGCAGGACAAAGATACAAAAAGGTTATTGGGAGGCAATAATTGATAATTTCTCATTGAAGTATAATTTTGTACGTAACAATTAATCACTACAGGGTGATTCGATTGCAAAGGGATTGATGGAAGTGCTGGTCTCATTTCAAGTTATTATTACCATTACAAGTTTTAGTTATAGATTAAAAAAATATATATATATATTGACGCATTGAAATTTAGAAAAAGCGAGGACAATCTTGATCCCATGCAAGGAAGCTGCAAAGATGAATTCCTAGTACAAAGATTAGTAAGGCTGTAGTTAAAAAACATGGTTTACATTTGGTAACGTTGTTTGGGGAATTGTTTCAGTAAAGTTTTCTATCTTTTTAGGAAAAGAATAATGTGTTTAGGTAACTGTTTCTTAAGTCTGGTTTGCCTTTCTTTTAGTGTATTCTACAATGAGCTAACTAATTCTCGTTCTGTAGGTAAGTAACCAAAGATTGTCTATTGGAATGACGCCAAAAACCCGGAGGCTGCCAAAGCCGGGGGAGGTGCTTGTATCTATCCATGGATCCCCGCTTGGCGTTTACAGGGAAGACAACATGGAAGCAATCCATGGTATGTACAATTTGGAAATGTTAACGAGTAGGCCAAATAAGTTGGTGGGTATATATGTTTATCATGCTTCTAAATTTTTCTAATAGACAAATTAATGTGCAGAATCAGAAGAGGGTTGA

mRNA sequence

ATGGCAAGGCGAAAGGCGAAGAAGTCAGTTAAGAAGTCCAGCCCTTCACCTATTCGAGAAGCAAAGGATGGATCAGCGAATGAGCTAAAAAGTGAGGATCAAGCATCATTGGTGTCCGACGAGGATGTTGAACGGCATGCTACTGCAATCCGTGCCATTCGGGATGTGGAAATCGAGCGTTTGATTACTGAATTGCGGTTGCTGCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTTGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGACGAGGCGAACAAGGAGAAATTGAAGTGCAATGGAAGGATACAGAGGATGAATTACACACTAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTGCATCGCCTGTCCACAGCTTACCCTAACTGCTCTGCCGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATTCCGAACTTCGCTTTGGAGGAACCCTCAGATAACATGGTGCTTGGCATGCCAGACCTTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCTATTGGAATGACGCCAAAAACCCGGAGGCTGCCAAAGCCGGGGGAGGTGCTTGTATCTATCCATGGATCCCCGCTTGGCGTTTACAGGGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGA

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAGTCAGTTAAGAAGTCCAGCCCTTCACCTATTCGAGAAGCAAAGGATGGATCAGCGAATGAGCTAAAAAGTGAGGATCAAGCATCATTGGTGTCCGACGAGGATGTTGAACGGCATGCTACTGCAATCCGTGCCATTCGGGATGTGGAAATCGAGCGTTTGATTACTGAATTGCGGTTGCTGCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTTGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGACGAGGCGAACAAGGAGAAATTGAAGTGCAATGGAAGGATACAGAGGATGAATTACACACTAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTGCATCGCCTGTCCACAGCTTACCCTAACTGCTCTGCCGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATTCCGAACTTCGCTTTGGAGGAACCCTCAGATAACATGGTGCTTGGCATGCCAGACCTTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCTATTGGAATGACGCCAAAAACCCGGAGGCTGCCAAAGCCGGGGGAGGTGCTTGTATCTATCCATGGATCCCCGCTTGGCGTTTACAGGGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGA

Protein sequence

MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG

Homology

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BLAST of Csor.00g059570 vs. NCBI nr
Match: KAG6604007.1 (hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 466 bits (1198), Expect = 3.62e-165
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240
           VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240

[Close]

BLAST of Csor.00g059570 vs. NCBI nr
Match: XP_023543921.1 (uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462 bits (1188), Expect = 1.21e-163
Identity = 238/241 (98.76%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWK+TEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKNTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240
           VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYRE+NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREENMEAIHESEE 240

[Close]

BLAST of Csor.00g059570 vs. NCBI nr
Match: KAG7034170.1 (hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459 bits (1181), Expect = 1.70e-162
Identity = 240/246 (97.56%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDLLQTPGV-----SNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAI 240
           VLGMPDLLQTPGV     SNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAI
Sbjct: 181 VLGMPDLLQTPGVRIFMVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAI 240

[Close]

BLAST of Csor.00g059570 vs. NCBI nr
Match: XP_022978547.1 (uncharacterized protein LOC111478496 [Cucurbita maxima])

HSP 1 Score: 451 bits (1161), Expect = 1.58e-159
Identity = 233/240 (97.08%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFF EKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAG+RSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240
           VLGMPDLLQTPG SNQRLSIGMTPKTRRLPKPGEV+VSIHGSPLGVYRE NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIHESEE 240

[Close]

BLAST of Csor.00g059570 vs. NCBI nr
Match: XP_022950768.1 (uncharacterized protein LOC111453776 [Cucurbita moschata])

HSP 1 Score: 426 bits (1096), Expect = 2.92e-149
Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSP 223
           VLGMPDLL+TPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHG P
Sbjct: 181 VLGMPDLLRTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGYP 223

[Close]

BLAST of Csor.00g059570 vs. ExPASy TrEMBL
Match: A0A6J1ILD3 (uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496 PE=4 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 7.66e-160
Identity = 233/240 (97.08%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFF EKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAG+RSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240
           VLGMPDLLQTPG SNQRLSIGMTPKTRRLPKPGEV+VSIHGSPLGVYRE NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIHESEE 240

[Close]

BLAST of Csor.00g059570 vs. ExPASy TrEMBL
Match: A0A6J1GFT3 (uncharacterized protein LOC111453776 OS=Cucurbita moschata OX=3662 GN=LOC111453776 PE=4 SV=1)

HSP 1 Score: 426 bits (1096), Expect = 1.41e-149
Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSP 223
           VLGMPDLL+TPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHG P
Sbjct: 181 VLGMPDLLRTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGYP 223

[Close]

BLAST of Csor.00g059570 vs. ExPASy TrEMBL
Match: A0A1S4DWB9 (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)

HSP 1 Score: 412 bits (1058), Expect = 3.08e-144
Identity = 213/241 (88.38%), Postives = 225/241 (93.36%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKK+VKKSSPS  R AKD +A+++K+       SDEDVERHA AIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTH------SDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           G+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSDNM
Sbjct: 121 GVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240
           VLGMPD+LQTPG+SNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEE
Sbjct: 181 VLGMPDILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 235

[Close]

BLAST of Csor.00g059570 vs. ExPASy TrEMBL
Match: A0A5A7SXV4 (Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002410 PE=4 SV=1)

HSP 1 Score: 403 bits (1036), Expect = 6.68e-141
Identity = 208/236 (88.14%), Postives = 220/236 (93.22%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKK+VKKSSPS  R AKD +A+++K+       SDEDVERHA AIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTH------SDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           G+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSDNM
Sbjct: 121 GVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH 236
           VLGMPD+LQTPG+SNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Sbjct: 181 VLGMPDILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 230

[Close]

BLAST of Csor.00g059570 vs. ExPASy TrEMBL
Match: A0A0A0KK81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1)

HSP 1 Score: 403 bits (1035), Expect = 7.94e-141
Identity = 212/241 (87.97%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           MARRKAKK+VKKSSPSPI EAKD +AN            DEDVERHA AIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAAN------------DEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LIT LRLLRSYFNKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPAD
Sbjct: 61  LITVLRLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           GIDIHASLLHRLS AYPNCSAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+
Sbjct: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNL 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240
           VLGMPD+ QTPGVSNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEE
Sbjct: 181 VLGMPDIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 229

[Close]

BLAST of Csor.00g059570 vs. TAIR 10
Match: AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 195.7 bits (496), Expect = 4.4e-50
Identity = 113/238 (47.48%), Postives = 154/238 (64.71%), Query Frame = 0


Query: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
           M +RKAK+ VK      + E        ++ E++     DE+VER   AIRAIRDVEIE+
Sbjct: 1   MPKRKAKECVK------LTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQ 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           ++T LRLLRSYF +EQL TP+L FF+E LP LSISR  E GEIE++W+D   +      +
Sbjct: 61  MLTALRLLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNEN 120

Query: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
           G+D++ S+L RLS  + +  +   S  G++    +VK N    +N Q+ N   +  S+N 
Sbjct: 121 GVDMNYSILKRLSMRFTDLYS-RSSLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQ 180

Query: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYRED-NMEAIHE 238
           +L   D  QTPGV+ QRLS GMTPKT RLPK GE+++S+HGSPLGVY+ED NM AI+E
Sbjct: 181 MLPGHDAFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230

The following BLAST results are available for this feature:

BLAST of Csor.00g059570 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g059570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604007.1	3.62e-165	100.00	hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023543921.1	1.21e-163	98.76	uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]	[more]
KAG7034170.1	1.70e-162	97.56	hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022978547.1	1.58e-159	97.08	uncharacterized protein LOC111478496 [Cucurbita maxima]	[more]
XP_022950768.1	2.92e-149	99.10	uncharacterized protein LOC111453776 [Cucurbita moschata]	[more]

BLAST of Csor.00g059570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILD3	7.66e-160	97.08	uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496...	[more]
A0A6J1GFT3	1.41e-149	99.10	uncharacterized protein LOC111453776 OS=Cucurbita moschata OX=3662 GN=LOC1114537...	[more]
A0A1S4DWB9	3.08e-144	88.38	uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=...	[more]
A0A5A7SXV4	6.68e-141	88.14	Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. maku...	[more]
A0A0A0KK81	7.94e-141	87.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1	[more]

BLAST of Csor.00g059570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39630.1	4.4e-50	47.48	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..41
None	No IPR available	PANTHER	PTHR37248	TRANSLATION INITIATION FACTOR	coord: 1..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g059570.m01	Csor.00g059570.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity