Csor.00g059560 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g059560
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 6587412 .. 6587795 (+)
RNA-Seq ExpressionCsor.00g059560
SyntenyCsor.00g059560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGATTTAACTACGCCGGTGAACTGCTGCGAAATCTCTCTCTCCTTCTTTTCAGCTCCGGCGGAGGGGCAGTGTTGAGATGCGGGGAAGATTGGGCGGGGAAAGAAGCTAGTTTGAAACTGAATAATGCCGCTGACGGTATGAGAATGGCGCAGGTTGGATATTACAGATGTGCTTAAAATGGGCCGTTGAGCCCAGAAAGTGGGGCTAAAATGGGAGAATATTTAAGTCTTTCTTAAACTTTTTAAACCAAGTGTCATTCGACTCAGACCAGGCAGTGGCTATGCCACACCATTTCCCTCATTTTGGCATGCATCCTCAGTAGCTTCGAAAGCAAAGCACCTGAGCCTCGGTCTCCCACCAATTTGGCTATCTTTTGA

mRNA sequence

ATGAATGGATTTAACTACGCCGGTGAACTGCTGCGAAATCTCTCTCTCCTTCTTTTCAGCTCCGGCGGAGGGGCAGTGTTGAGATGCGGGGAAGATTGGGCGGGGAAAGAAGCTAGTTTGAAACTGAATAATGCCGCTGACGGTATGAGAATGGCGCAGACCAGGCAGTGGCTATGCCACACCATTTCCCTCATTTTGGCATGCATCCTCAGTAGCTTCGAAAGCAAAGCACCTGAGCCTCGGTCTCCCACCAATTTGGCTATCTTTTGA

Coding sequence (CDS)

ATGAATGGATTTAACTACGCCGGTGAACTGCTGCGAAATCTCTCTCTCCTTCTTTTCAGCTCCGGCGGAGGGGCAGTGTTGAGATGCGGGGAAGATTGGGCGGGGAAAGAAGCTAGTTTGAAACTGAATAATGCCGCTGACGGTATGAGAATGGCGCAGACCAGGCAGTGGCTATGCCACACCATTTCCCTCATTTTGGCATGCATCCTCAGTAGCTTCGAAAGCAAAGCACCTGAGCCTCGGTCTCCCACCAATTTGGCTATCTTTTGA

Protein sequence

MNGFNYAGELLRNLSLLLFSSGGGAVLRCGEDWAGKEASLKLNNAADGMRMAQTRQWLCHTISLILACILSSFESKAPEPRSPTNLAIF
Homology
[Close]
BLAST of Csor.00g059560 vs. NCBI nr
Match: KAG6604008.1 (hypothetical protein SDJN03_04617, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (462), Expect = 6.75e-58
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MNGFNYAGELLRNLSLLLFSSGGGAVLRCGEDWAGKEASLKLNNAADGMRMAQTRQWLCH 60
          MNGFNYAGELLRNLSLLLFSSGGGAVLRCGEDWAGKEASLKLNNAADGMRMAQTRQWLCH
Sbjct: 1  MNGFNYAGELLRNLSLLLFSSGGGAVLRCGEDWAGKEASLKLNNAADGMRMAQTRQWLCH 60

Query: 61 TISLILACILSSFESKAPEPRSPTNLAIF 89
          TISLILACILSSFESKAPEPRSPTNLAIF
Sbjct: 61 TISLILACILSSFESKAPEPRSPTNLAIF 89

[Close]
BLAST of Csor.00g059560 vs. NCBI nr
Match: KAG7034172.1 (hypothetical protein SDJN02_03899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106 bits (265), Expect = 5.79e-28
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0 

Query: 1  MNGFNYAGELLRNLSLLLFSSGGGAVLRCGEDWAGKEASLKLNNAADGMRMAQTRQWLCH 60
          MNGFNYAGELLRNL LLLFSSGGGAVLRCGEDWAGKEASLKLNNAAD          + H
Sbjct: 1  MNGFNYAGELLRNLCLLLFSSGGGAVLRCGEDWAGKEASLKLNNAADVA--------MPH 60

Query: 61 TISLILACILSSFESKAPEPRSPTNLAIF 89
            + + A  ++S ++K   PRSPTNLAIF
Sbjct: 61 LFAHLDASSVAS-KAKHLTPRSPTNLAIF 80

[Close]
BLAST of Csor.00g059560 vs. NCBI nr
Match: KAA0036268.1 (hypothetical protein E6C27_scaffold18G00670 [Cucumis melo var. makuwa] >TYK12662.1 hypothetical protein E5676_scaffold255G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 7.18e-04
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1  MNGFNYAGELLRNLSLLLFSSGGGAVLRCG-EDWAGKEASLKLNNAA-DGMRMAQTRQ 56
          +NG  YAG+       L FSS G   LR G EDWAG++  LKLNN+A DGMR  +  Q
Sbjct: 3  INGLIYAGDCREICLFLFFSSAGEPTLRRGQEDWAGEDGRLKLNNSAVDGMRTTRDGQ 60

[Close]
BLAST of Csor.00g059560 vs. ExPASy TrEMBL
Match: A0A5A7T0B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002500 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.48e-04
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1  MNGFNYAGELLRNLSLLLFSSGGGAVLRCG-EDWAGKEASLKLNNAA-DGMRMAQTRQ 56
          +NG  YAG+       L FSS G   LR G EDWAG++  LKLNN+A DGMR  +  Q
Sbjct: 3  INGLIYAGDCREICLFLFFSSAGEPTLRRGQEDWAGEDGRLKLNNSAVDGMRTTRDGQ 60

The following BLAST results are available for this feature:
BLAST of Csor.00g059560 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g059560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604008.16.75e-58100.00hypothetical protein SDJN03_04617, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034172.15.79e-2867.42hypothetical protein SDJN02_03899, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0036268.17.18e-0450.00hypothetical protein E6C27_scaffold18G00670 [Cucumis melo var. makuwa] >TYK12662... [more]
BLAST of Csor.00g059560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T0B03.48e-0450.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Csor.00g059560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g059560.m01Csor.00g059560.m01mRNA