Csor.00g058380 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g058380
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description50S ribosomal protein L7/L12
LocationCsor_Chr03: 7118876 .. 7119382 (-)
RNA-Seq ExpressionCsor.00g058380
SyntenyCsor.00g058380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTCAGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTAAACAAGTACGGGCCTGCAGTTTCTGGGATAAGTGGAGCAGGTTCAGCCGCCGCTGGATCTGCCTCTGCCGTAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

mRNA sequence

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTCAGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTAAACAAGTACGGGCCTGCAGTTTCTGGGATAAGTGGAGCAGGTTCAGCCGCCGCTGGATCTGCCTCTGCCGTAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

Coding sequence (CDS)

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTCAGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTAAACAAGTACGGGCCTGCAGTTTCTGGGATAAGTGGAGCAGGTTCAGCCGCCGCTGGATCTGCCTCTGCCGTAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

Protein sequence

MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Homology
[Close]
BLAST of Csor.00g058380 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-15
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 0 

Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKT 99
           +E I +++  LT ++  + +     + G++   P    ++   SAA  SA+AV   AEKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAP----VAVVASAAGESAAAV---AEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T+LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of Csor.00g058380 vs. ExPASy Swiss-Prot
Match: Q1MIF0 (50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-14
Identity = 55/126 (43.65%), Postives = 74/126 (58.73%), Query Frame = 0 

Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKT 99
           L +I D++  LT +E  + + L   K G++   P       A +AAAG A+A   E EKT
Sbjct: 4   LAKIVDDLSSLTVLEAAELSKLLEEKWGVSAAAPV------AVAAAAGGAAAAVVEEEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            FD+ L +   A KI +IKEVR  T LGLKEAKDLVE  P  +K+GV K +   I +KL+
Sbjct: 64  EFDVILVE-AGANKINVIKEVRAITGLGLKEAKDLVEAAPKAVKEGVNKAEAADIKKKLE 122

Query: 160 ELGATA 166
           + GA A
Sbjct: 124 DAGAKA 122

[Close]
BLAST of Csor.00g058380 vs. ExPASy Swiss-Prot
Match: A6LKB9 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-14
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 38  QKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAE 97
           +KLE+I +E+  LT  E  +   +   K G++   P V  +  AG+AA G A+A     E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAA----EE 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

[Close]
BLAST of Csor.00g058380 vs. ExPASy Swiss-Prot
Match: Q2JM48 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKE- 96
           ++++ +I +E+  L+ +E  +         G++   PA   +  A  AAA +A A A E 
Sbjct: 3   SERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPEP 62

Query: 97  -AEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPI 156
             E+T FD+ LE   A  KI I+K VR  T LGLK+AKDLVE  P  +K+GV K++ N I
Sbjct: 63  VEEQTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEANDI 122

Query: 157 IEKLKELGATAVLE 169
            +KL+E GAT  ++
Sbjct: 123 KKKLEEAGATVKIK 136

[Close]
BLAST of Csor.00g058380 vs. ExPASy Swiss-Prot
Match: Q9L5W4 (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 0 

Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKT 99
           +E I +++  LT I+  + +     + G++   P         +A A +       AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVSASAPV--------AAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ TDLGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

[Close]
BLAST of Csor.00g058380 vs. NCBI nr
Match: XP_022950898.1 (uncharacterized protein LOC111453857 [Cucurbita moschata] >KAG6604124.1 50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301 bits (772), Expect = 1.23e-102
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. NCBI nr
Match: XP_023543130.1 (uncharacterized protein LOC111803093 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291 bits (745), Expect = 1.61e-98
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MSSI SKLPAKA VR LTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI
Sbjct: 1   MSSIVSKLPAKALVRRLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSGIS  GSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGISAPGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. NCBI nr
Match: XP_022977261.1 (uncharacterized protein LOC111477630 [Cucurbita maxima])

HSP 1 Score: 290 bits (741), Expect = 6.54e-98
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MSSIASKLPAKA VRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSG+S  GSAAAGSASA AKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. NCBI nr
Match: XP_038882677.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 285 bits (730), Expect = 3.10e-96
Identity = 159/168 (94.64%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAKA VRLLTVA RPLLVRSLSTVS+ERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSKERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSG+S  GSAAAGSASA AKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. NCBI nr
Match: XP_004141864.1 (uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical protein Csa_003359 [Cucumis sativus])

HSP 1 Score: 280 bits (716), Expect = 4.22e-94
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+ VRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSG+S  GSAAAGSA+A  KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. ExPASy TrEMBL
Match: A0A6J1GG58 (uncharacterized protein LOC111453857 OS=Cucurbita moschata OX=3662 GN=LOC111453857 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 5.95e-103
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. ExPASy TrEMBL
Match: A0A6J1IJE5 (uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 3.16e-98
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MSSIASKLPAKA VRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSG+S  GSAAAGSASA AKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. ExPASy TrEMBL
Match: A0A0A0KLI9 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 2.04e-94
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+ VRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSG+S  GSAAAGSA+A  KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. ExPASy TrEMBL
Match: A0A6J1BTU0 (uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005295 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 4.81e-93
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAKA VRLLTVA RPLLVRSLSTVS+ER QKLERIADE+L L+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSG+S  GSA+AGSASA AKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. ExPASy TrEMBL
Match: A0A6J1HIJ7 (uncharacterized protein LOC111463314 OS=Cucurbita moschata OX=3662 GN=LOC111463314 PE=4 SV=1)

HSP 1 Score: 276 bits (706), Expect = 6.83e-93
Identity = 153/168 (91.07%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MSSIASKLPAKASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAKA  RLLT+A R LLVRSL TVSEERTQKL+RIAD++L LTKIERHDYAI
Sbjct: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSG+S +GSA+AGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Csor.00g058380 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-36
Identity = 81/135 (60.00%), Postives = 103/135 (76.30%), Query Frame = 0 

Query: 34  EERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVA 93
           E RT+KLERIAD++L L +IE +DY++LF  K+GLN+YG AV+     G A   SAS   
Sbjct: 36  EARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVAVTGSVGDA---SASTET 95

Query: 94  KEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNP 153
           K AEKT FD+KLEKF+AA+KIK+IKE+R FTDLGLKEAK LVEK PV++K G+TK++   
Sbjct: 96  KTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEK 155

Query: 154 IIEKLKELGATAVLE 169
           I+EKLK +GA   LE
Sbjct: 156 IMEKLKAVGAIVALE 167

[Close]
BLAST of Csor.00g058380 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVS----------GISGAGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+ G G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +   + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of Csor.00g058380 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVS----------GISGAGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+ G G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +   + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of Csor.00g058380 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 70/163 (42.94%), Postives = 104/163 (63.80%), Query Frame = 0 

Query: 12  ASVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNK- 71
           +SV+L T+ S     RS S+ + + ++ + +I +E+ +LT +E  D   + R K+ +++ 
Sbjct: 23  SSVQLFTIQS-----RSYSSPATQ-SENVSKIVNELSNLTLLETMDLTEILRQKLNISEL 82

Query: 72  --YGPAVSGISGAGSAAAGSASAVAKEAE---KTVFDIKLEKFDAAAKIKIIKEVRTFTD 131
                 + G+S  GS A+ SA    KE +   KT FD+ L+ +DA +KIK+IKEVRT T 
Sbjct: 83  PVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITA 142

Query: 132 LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LGLKEAKDLVEK P +LKKGV+K++   IIEKLK +GA   +E
Sbjct: 143 LGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of Csor.00g058380 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-22
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGISGAGSAAAGSASAVAKEA 96
           + K+  +A+ +  L+  ER          + L K     S   G G+     A  V ++ 
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISS--DGIGAKQDTGAGNVEEKK 116

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ N II 
Sbjct: 117 EKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIA 176

Query: 157 KLKELGATAVLE 169
           K+K +G  AV+E
Sbjct: 177 KIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of Csor.00g058380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P411891.8e-1542.1950S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
Q1MIF04.5e-1443.6550S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841)... [more]
A6LKB95.9e-1444.0350S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI... [more]
Q2JM487.7e-1438.8150S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32... [more]
Q9L5W42.2e-1339.0650S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494... [more]
BLAST of Csor.00g058380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950898.11.23e-102100.00uncharacterized protein LOC111453857 [Cucurbita moschata] >KAG6604124.1 50S ribo... [more]
XP_023543130.11.61e-9897.02uncharacterized protein LOC111803093 [Cucurbita pepo subsp. pepo][more]
XP_022977261.16.54e-9896.43uncharacterized protein LOC111477630 [Cucurbita maxima][more]
XP_038882677.13.10e-9694.6450S ribosomal protein L7/L12 [Benincasa hispida][more]
XP_004141864.14.22e-9492.26uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical ... [more]
BLAST of Csor.00g058380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GG585.95e-103100.00uncharacterized protein LOC111453857 OS=Cucurbita moschata OX=3662 GN=LOC1114538... [more]
A0A6J1IJE53.16e-9896.43uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630... [more]
A0A0A0KLI92.04e-9492.26Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4957... [more]
A0A6J1BTU04.81e-9391.67uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1HIJ76.83e-9391.07uncharacterized protein LOC111463314 OS=Cucurbita moschata OX=3662 GN=LOC1114633... [more]
BLAST of Csor.00g058380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37660.11.5e-3660.00Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT1G70190.11.7e-2446.48Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.21.7e-2446.48Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT4G36420.13.2e-2342.94Ribosomal protein L12 family protein [more]
AT3G06040.16.0e-2246.97Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..168
NoneNo IPR availablePANTHERPTHR45987:SF1150S RIBOSOMAL PROTEIN L7/L12coord: 2..168
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
e-value: 9.8E-21
score: 73.9
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 94..167
e-value: 6.2E-21
score: 76.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 97..167
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 2..168
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 39..167
e-value: 1.54297E-30
score: 105.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g058380.m01Csor.00g058380.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome