Csor.00g055430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g055430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA polymerase alpha subunit B
Location	Csor_Chr04: 9323043 .. 9326003 (+)
RNA-Seq Expression	Csor.00g055430
Synteny	Csor.00g055430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGAAGAGATTCAAACGAGTAACCCTAAGAATTGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGGAAGAGATTCTCAAGAAATGTAAGCTCTACTTCTCATTTTTGTTTGGTTTATGTTCATGATTGGGTAGCATTGACGCGCGATTCCTCCCTTTTCTGTATTCGATCTTTCGTTGTGTGTTCATTACAATCTAAAGCCTTCAGAAATAGATTCTCAAGAGATGACTGTTTATACTAAATTGATGAGGGAGATCCATCAGTTCTTTAATGATTAAATTATTAAAGATCGCCTTATTCTGCAGCCTGCTTTTGACATTACATCTGATCTTAGACTTCTGGTAACTTATTCTTAGGATTTGAGTTACTTCCAGATCTGGAGCTTGATTATGTTGAGTAATGCGTACTGTTGAACTATGTTGGTTTTGGTTCAGATATTCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGGTAAAACATGGATACAACTTTGCATTTCCAAACAAGTTTTTTATGAATATTTTATTTTCATCCAGGTTTTCTATGTTGGACGTCTGAAGTTTGCTATCACTGTTTATCAATTAATAGCTGATTGTTTTGATACTATGAAAAGAAAGAAAGAAAGGGAAAAATGAGCGCTGGATGCTCCATTGTAAAAAAAAAGACATCAACATATAACGAAGCGAAACCACTACGATCATCCTGGCCTTTAGTTTGTACGTGATGTGTGTTTATTCTGGAGTAGGAATAACAATAACCGTCCATCGGTATTCTATTGCTTACAAGTGAAGAATTACATTTGGTTTAGGGTATCGTGCACCTACACTTGCTTAGTTTATACCATGAGATCATTTTTTAGTTCTTAATTCTTATCAGAAAAACAAAAGGGGGAAAAGGACTTTTGAACATTCGTTGTTCTTGAGCTTCTCTTTGGATATCTGACAGGAGAAAAAGAAACCAGTGCACAATGGGGGACTCCCTTGGGGATGATCCTTTTGATTTGCTACCTGAGTTCCCTTCTGCACTTGATTTGATTTTTATTCTTTTGTTATTTTAATTTGAGGGAGAAGGGATTGGAAAGAAAGATTGATCGGAAATGTAAGAGAGTTCTAAATTATGAACAAAAAATCCATTCCTCCTACCCACCTAATATAATTCTAAAAAACTCAGGAAATAAACCATGCAATGGTTTTCTGTGAACTCTGTTGGTCAAGCCTGTTTTAGCTGATGTAACGCCCCTACACCAGAGTAGGGAAGATAATCAAATATTGACAGTCTTCATTTTTTGAAACCCAGACTACCTAGTTTTCTTCGTTACTGCAATGCAATGACACGATGGTTGTAAATTTTCAAAGCATACAGAACTGATGTCTGATGCATATTAATACAGAAAGAATTCTGATATTTCCATCCATAATGGATTTCAGGCAAAGATAGCCTGCTGCACCATGGATAAGATATTCTCAGACAAAGAGCTGTAATCCTAGCTAGTTGAATCTAAGAACCCTCATAAACTTTTTGGATATGCAAATCCTTGGTTCATAAATGCTAAAACTCCCAAATCAATTTGATTTTTTCCAAATGATTGCAACTCTTGGAAATTTGATCTAACAATCTTATTGAAGAATAAGAACTTTAGATCTAAATATATCCAAGAACCTCAAAATGATAAGGAATCTCCTCAAGGGAAAATAAGATTCGGGTTAGCTTGTCGATCGAATACCTCAAGGCAAGATCACTTGTTTGAGATTCAAATCACTCCACAAGCAAGATCGACCGTGTCAAGCTTGAATGATTCTAAACATGCAACCTAAACTATATAGAATTGCAAAGAAACTTAGCACTTGGCTAAAAGAAAGTACAAACGCTCTTTTACTACATTTTTCGAGTCTACGTTGCAAAGATAACATACATAGTTTTATATAGCCTCAAAATGAAAACACTTAACCTTCCATGAGACATTTCAAGAGAACACTTTATGACAATAATTAGCCACTATGTATATATGATCTTAAAGTAAATAAAAAGTCTTAAAATACATTAATGAAAACACCATAACTCTAGATTATCATCCACCCTAAATTGGTCACCATCTAAGAATAATGAAACTCATCTTTTTCGAAATACATATTGCACAATTGAGATGTCTTGGTTCATATCAAGGTTCATATCAAGCTGTCAAGAAACCGAACTTAGGGAGCTGTCAAGAAACCTAACTTAGGGAGCTGTCAAGAAACCTAACTTAGGGAGCTGTCAAGAAACCTAACTTAGGGAGCTGTCAAGAAACCTAACTTAGGGAGCAACCAACGACTGCCTGAGCACACTGCAAGTCATGTACTTTGCCAGTGCAGGCATGTTTTATATGAGGCATAGGAATGTTGGAAATCCAATGTATTAATATAGTGTTTATCTTACGGTTCTCTTGTTTCACTTGTTTACAATGCACAACAGCTTTCATCCTCTATGGCCTCCAGCAGCAGGAGTTCCACTGGATTTTTCACTTGCCCCAGAAGCTCTTGACATCTCTGTAATACCCGATGTTCACATTCTTCCATCGAACATGAAACACTTTGGGAAGGTAAGGGATTGTCCACGTTATTTCATTATTGTACAGTACAATTTACGTATTACTGTCAGTTTTGCCTTTTATCTTACATCAATTATTTATTGTCAAAACTTCGTCTGTGATGAAAGCAAAGTGTTACAATTTTGATACATGTTATAGTAGACCAGCGACTAGAGCTCAACCTCATATTTTGCCTTTAAGCAGATAAAACGTACATGTTTGTAAGAGCTTCAATGACCTTCCACTTCGTCAGGTTATATCCATCAATGAAGGAGGTTCAGAGGAAGAGCAAGTGAGCTGCGTATGTGTGAATCCCGAAACATTAGCCAAGGATGAAGGAGTACTTTTGTAA

mRNA sequence

ATGAAGAGGAAGAGATTCAAACGAGTAACCCTAAGAATTGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGGAAGAGATTCTCAAGAAATATCGCCTTATTCTGCAGCCTGCTTTTGACATTACATCTGATCTTAGACTTCTGATATTCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGCTTTCATCCTCTATGGCCTCCAGCAGCAGGAGTTCCACTGGATTTTTCACTTGCCCCAGAAGCTCTTGACATCTCTGTAATACCCGATGTTCACATTCTTCCATCGAACATGAAACACTTTGGGAAGGTTATATCCATCAATGAAGGAGGTTCAGAGGAAGAGCAAGTGAGCTGCGTATGTGTGAATCCCGAAACATTAGCCAAGGATGAAGGAGTACTTTTGTAA

Coding sequence (CDS)

ATGAAGAGGAAGAGATTCAAACGAGTAACCCTAAGAATTGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGGAAGAGATTCTCAAGAAATATCGCCTTATTCTGCAGCCTGCTTTTGACATTACATCTGATCTTAGACTTCTGATATTCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGCTTTCATCCTCTATGGCCTCCAGCAGCAGGAGTTCCACTGGATTTTTCACTTGCCCCAGAAGCTCTTGACATCTCTGTAATACCCGATGTTCACATTCTTCCATCGAACATGAAACACTTTGGGAAGGTTATATCCATCAATGAAGGAGGTTCAGAGGAAGAGCAAGTGAGCTGCGTATGTGTGAATCCCGAAACATTAGCCAAGGATGAAGGAGTACTTTTGTAA

Protein sequence

MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYRLILQPAFDITSDLRLLIFSLPTQAFWKQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQVSCVCVNPETLAKDEGVLL

Homology

[Close]

BLAST of Csor.00g055430 vs. ExPASy Swiss-Prot
Match: Q14181 (DNA polymerase alpha subunit B OS=Homo sapiens OX=9606 GN=POLA2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 71  QISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQVS 130
           Q S++PL+PP   + +D+        + V PDV I+PS +++F K           + + 
Sbjct: 505 QRSYYPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVK-----------DVLG 564

Query: 131 CVCVNPETLAKDE 144
           CVCVNP  L K +
Sbjct: 565 CVCVNPGRLTKGQ 566

[Close]

BLAST of Csor.00g055430 vs. ExPASy Swiss-Prot
Match: P33611 (DNA polymerase alpha subunit B OS=Mus musculus OX=10090 GN=Pola2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 27/83 (32.53%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 61  FSLPTQAFWKQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISIN 120
           FS   +    Q S++PL+PP   + +D+        + V PDV I+PS +++F K I   
Sbjct: 495 FSRVLKHILTQRSYYPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVPSELRYFVKDI--- 554

Query: 121 EGGSEEEQVSCVCVNPETLAKDE 144
                     CVCVNP  L K +
Sbjct: 555 --------FGCVCVNPGRLTKGQ 566

[Close]

BLAST of Csor.00g055430 vs. ExPASy Swiss-Prot
Match: O89043 (DNA polymerase alpha subunit B OS=Rattus norvegicus OX=10116 GN=Pola2 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.2e-04
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 71  QISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQVS 130
           Q S++PL+PP   + +D+        + V PDV I+PS +++F K I             
Sbjct: 505 QRSYYPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVPSELRYFVKDI-----------FG 564

Query: 131 CVCVNPETLAKDE 144
           CVC+NP  L K +
Sbjct: 565 CVCMNPGRLTKGQ 566

[Close]

BLAST of Csor.00g055430 vs. NCBI nr
Match: KAG6601579.1 (hypothetical protein SDJN03_06812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (749), Expect = 8.14e-100
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYRLILQPAFDITSDLRLLI 60
           MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYRLILQPAFDITSDLRLLI
Sbjct: 1   MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYRLILQPAFDITSDLRLLI 60

Query: 61  FSLPTQAFWKQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISIN 120
           FSLPTQAFWKQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISIN
Sbjct: 61  FSLPTQAFWKQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISIN 120

Query: 121 EGGSEEEQVSCVCVNPETLAKDEGVLL 147
           EGGSEEEQVSCVCVNPETLAKDEGVLL
Sbjct: 121 EGGSEEEQVSCVCVNPETLAKDEGVLL 147

[Close]

BLAST of Csor.00g055430 vs. NCBI nr
Match: XP_038886670.1 (LOW QUALITY PROTEIN: DNA polymerase alpha subunit B [Benincasa hispida])

HSP 1 Score: 125 bits (314), Expect = 3.25e-30
Identity = 72/142 (50.70%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 47  QPAFDITSDLRLLIFSLPTQAFW------------------------------------- 106
           QPAFDI SDLRL I SLP                                          
Sbjct: 459 QPAFDIPSDLRLQISSLPNPCILEANQAKIACSHMDILRHLXGEELSRNLTKGVTNDRLS 518

Query: 107 -------KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEG 144
                  +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EG
Sbjct: 519 TLASHILRQRSFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEG 578

[Close]

BLAST of Csor.00g055430 vs. NCBI nr
Match: XP_008452343.1 (PREDICTED: DNA polymerase alpha subunit B [Cucumis melo] >XP_008452395.1 PREDICTED: DNA polymerase alpha subunit B [Cucumis melo] >XP_008452468.1 PREDICTED: DNA polymerase alpha subunit B [Cucumis melo] >XP_008452549.1 PREDICTED: DNA polymerase alpha subunit B [Cucumis melo] >XP_008452631.1 PREDICTED: DNA polymerase alpha subunit B [Cucumis melo])

HSP 1 Score: 122 bits (307), Expect = 2.97e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEEQ 
Sbjct: 525 RQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQA 584

Query: 130 SCVCVNPETLAKDEG 144
            CVCVNP  LAK EG
Sbjct: 585 RCVCVNPGRLAKGEG 599

[Close]

BLAST of Csor.00g055430 vs. NCBI nr
Match: XP_004137446.1 (DNA polymerase alpha subunit B [Cucumis sativus] >XP_011650247.1 DNA polymerase alpha subunit B [Cucumis sativus] >XP_011650259.1 DNA polymerase alpha subunit B [Cucumis sativus] >XP_031738804.1 DNA polymerase alpha subunit B [Cucumis sativus])

HSP 1 Score: 122 bits (307), Expect = 2.97e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEEQ 
Sbjct: 525 RQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQA 584

Query: 130 SCVCVNPETLAKDEG 144
            CVCVNP  LAK EG
Sbjct: 585 RCVCVNPGRLAKGEG 599

[Close]

BLAST of Csor.00g055430 vs. NCBI nr
Match: TYJ98951.1 (DNA polymerase alpha subunit B [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 3.17e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEEQ 
Sbjct: 546 RQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQA 605

Query: 130 SCVCVNPETLAKDEG 144
            CVCVNP  LAK EG
Sbjct: 606 RCVCVNPGRLAKGEG 620

[Close]

BLAST of Csor.00g055430 vs. ExPASy TrEMBL
Match: A0A1S3BUF0 (DNA polymerase alpha subunit B OS=Cucumis melo OX=3656 GN=LOC103493371 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.44e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEEQ 
Sbjct: 525 RQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQA 584

Query: 130 SCVCVNPETLAKDEG 144
            CVCVNP  LAK EG
Sbjct: 585 RCVCVNPGRLAKGEG 599

[Close]

BLAST of Csor.00g055430 vs. ExPASy TrEMBL
Match: A0A5D3BJQ2 (DNA polymerase alpha subunit B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001520 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.54e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEEQ 
Sbjct: 546 RQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQA 605

Query: 130 SCVCVNPETLAKDEG 144
            CVCVNP  LAK EG
Sbjct: 606 RCVCVNPGRLAKGEG 620

[Close]

BLAST of Csor.00g055430 vs. ExPASy TrEMBL
Match: A0A0A0LQA4 (DNA polymerase alpha subunit B OS=Cucumis sativus OX=3659 GN=Csa_1G039840 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.80e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLAP+ALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEEQ 
Sbjct: 642 RQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQA 701

Query: 130 SCVCVNPETLAKDEG 144
            CVCVNP  LAK EG
Sbjct: 702 RCVCVNPGRLAKGEG 716

[Close]

BLAST of Csor.00g055430 vs. ExPASy TrEMBL
Match: A0A6J1DDL1 (DNA polymerase alpha subunit B OS=Momordica charantia OX=3673 GN=LOC111019803 PE=3 SV=1)

HSP 1 Score: 121 bits (303), Expect = 5.04e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLA EALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEE+ 
Sbjct: 521 RQRSFYPLYPPAEGVPLDFSLAAEALDISVIPDILILPSDMKHFVKVISLGEGGSEEERA 580

Query: 130 SCVCVNPETLAKDEG 144
           SCVCVNP  LAK EG
Sbjct: 581 SCVCVNPGRLAKGEG 595

[Close]

BLAST of Csor.00g055430 vs. ExPASy TrEMBL
Match: A0A6J1DEX3 (DNA polymerase alpha subunit B OS=Momordica charantia OX=3673 GN=LOC111019803 PE=3 SV=1)

HSP 1 Score: 121 bits (303), Expect = 5.10e-29
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PPA GVPLDFSLA EALDISVIPD+ ILPS+MKHF KVIS+ EGGSEEE+ 
Sbjct: 525 RQRSFYPLYPPAEGVPLDFSLAAEALDISVIPDILILPSDMKHFVKVISLGEGGSEEERA 584

Query: 130 SCVCVNPETLAKDEG 144
           SCVCVNP  LAK EG
Sbjct: 585 SCVCVNPGRLAKGEG 599

[Close]

BLAST of Csor.00g055430 vs. TAIR 10
Match: AT1G67630.1 (DNA polymerase alpha 2 )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 70  KQISFHPLWPPAAGVPLDFSLAPEALDISVIPDVHILPSNMKHFGKVISINEGGSEEEQV 129
           +Q SF+PL+PP   +P D SLAP+AL IS IPD+ +LPS+M++F K++S+   G EE+  
Sbjct: 526 RQRSFYPLYPPPESLPYDSSLAPKALQISSIPDILLLPSDMRYFVKILSL---GEEEDAA 585

Query: 130 SCVCVNPETLAKDEG 145
            CVCVNP  LAK EG
Sbjct: 586 KCVCVNPGRLAKGEG 597

The following BLAST results are available for this feature:

BLAST of Csor.00g055430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14181	2.8e-04	32.88	DNA polymerase alpha subunit B OS=Homo sapiens OX=9606 GN=POLA2 PE=1 SV=2	[more]
P33611	2.8e-04	32.53	DNA polymerase alpha subunit B OS=Mus musculus OX=10090 GN=Pola2 PE=1 SV=2	[more]
O89043	8.2e-04	32.88	DNA polymerase alpha subunit B OS=Rattus norvegicus OX=10116 GN=Pola2 PE=1 SV=2	[more]

BLAST of Csor.00g055430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601579.1	8.14e-100	100.00	hypothetical protein SDJN03_06812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038886670.1	3.25e-30	50.70	LOW QUALITY PROTEIN: DNA polymerase alpha subunit B [Benincasa hispida]	[more]
XP_008452343.1	2.97e-29	77.33	PREDICTED: DNA polymerase alpha subunit B [Cucumis melo] >XP_008452395.1 PREDICT...	[more]
XP_004137446.1	2.97e-29	77.33	DNA polymerase alpha subunit B [Cucumis sativus] >XP_011650247.1 DNA polymerase ...	[more]
TYJ98951.1	3.17e-29	77.33	DNA polymerase alpha subunit B [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g055430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BUF0	1.44e-29	77.33	DNA polymerase alpha subunit B OS=Cucumis melo OX=3656 GN=LOC103493371 PE=3 SV=1	[more]
A0A5D3BJQ2	1.54e-29	77.33	DNA polymerase alpha subunit B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0LQA4	1.80e-29	77.33	DNA polymerase alpha subunit B OS=Cucumis sativus OX=3659 GN=Csa_1G039840 PE=3 S...	[more]
A0A6J1DDL1	5.04e-29	77.33	DNA polymerase alpha subunit B OS=Momordica charantia OX=3673 GN=LOC111019803 PE...	[more]
A0A6J1DEX3	5.10e-29	77.33	DNA polymerase alpha subunit B OS=Momordica charantia OX=3673 GN=LOC111019803 PE...	[more]

BLAST of Csor.00g055430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67630.1	1.7e-17	54.67	DNA polymerase alpha 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.60.21.60		coord: 15..145 e-value: 1.9E-12 score: 48.5
IPR016722	DNA polymerase alpha, subunit B	PANTHER	PTHR23061	DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT	coord: 69..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g055430.m01	Csor.00g055430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding