Csor.00g055410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g055410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 9327410 .. 9327712 (+)
RNA-Seq Expression	Csor.00g055410
Synteny	Csor.00g055410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAGAAGTTATGCTTTTAAATGGAATATTCCAAGGCTTTCAAGCGGAAGGGAATTTTGGCCTCTACAAGTCGGGTCTTCCTTTTCTTCTTATACCACTTCTTCAAATTAAAGCAACCTCTCCATTGGCTTGGCGGTGCGGCGGGGCTGGCGGCCGGGCTGGCGGCCGGGCAGACTTAATAGCTGCAACCGATAACCAAATCCTGTGTGGATTAGGCCTTATTATCAAGTCCTATGTGGATCAGGCCTTATTATCAAGTCCTATGTGGATTAGGCTTTTAAGTTTCGTGCACGATTAA

mRNA sequence

ATGGGTAGAGAAGTTATGCTTTTAAATGGAATATTCCAAGGCTTTCAAGCGGAAGGGAATTTTGGCCTCTACAAGTCGGGTCTTCCTTTTCTTCTTATACCACTTCTTCAAATTAAAGCAACCTCTCCATTGGCTTGGCGGTGCGGCGGGGCTGGCGGCCGGGCTGGCGGCCGGGCAGACTTAATAGCTGCAACCGATAACCAAATCCTGTGTGGATTAGGCCTTATTATCAAGTCCTATGTGGATCAGGCCTTATTATCAAGTCCTATGTGGATTAGGCTTTTAAGTTTCGTGCACGATTAA

Coding sequence (CDS)

ATGGGTAGAGAAGTTATGCTTTTAAATGGAATATTCCAAGGCTTTCAAGCGGAAGGGAATTTTGGCCTCTACAAGTCGGGTCTTCCTTTTCTTCTTATACCACTTCTTCAAATTAAAGCAACCTCTCCATTGGCTTGGCGGTGCGGCGGGGCTGGCGGCCGGGCTGGCGGCCGGGCAGACTTAATAGCTGCAACCGATAACCAAATCCTGTGTGGATTAGGCCTTATTATCAAGTCCTATGTGGATCAGGCCTTATTATCAAGTCCTATGTGGATTAGGCTTTTAAGTTTCGTGCACGATTAA

Protein sequence

MGREVMLLNGIFQGFQAEGNFGLYKSGLPFLLIPLLQIKATSPLAWRCGGAGGRAGGRADLIAATDNQILCGLGLIIKSYVDQALLSSPMWIRLLSFVHD

Homology

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BLAST of Csor.00g055410 vs. NCBI nr
Match: KAG6601581.1 (hypothetical protein SDJN03_06814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205 bits (522), Expect = 1.05e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MGREVMLLNGIFQGFQAEGNFGLYKSGLPFLLIPLLQIKATSPLAWRCGGAGGRAGGRAD 60
           MGREVMLLNGIFQGFQAEGNFGLYKSGLPFLLIPLLQIKATSPLAWRCGGAGGRAGGRAD
Sbjct: 1   MGREVMLLNGIFQGFQAEGNFGLYKSGLPFLLIPLLQIKATSPLAWRCGGAGGRAGGRAD 60

Query: 61  LIAATDNQILCGLGLIIKSYVDQALLSSPMWIRLLSFVHD 100
           LIAATDNQILCGLGLIIKSYVDQALLSSPMWIRLLSFVHD
Sbjct: 61  LIAATDNQILCGLGLIIKSYVDQALLSSPMWIRLLSFVHD 100

The following BLAST results are available for this feature:

BLAST of Csor.00g055410 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g055410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601581.1	1.05e-66	100.00	hypothetical protein SDJN03_06814, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g055410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g055410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g055410.m01	Csor.00g055410.m01	mRNA