Csor.00g055250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g055250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosomal protein L22p/L17e family protein isoform 1
Location	Csor_Chr04: 9429507 .. 9430483 (-)
RNA-Seq Expression	Csor.00g055250
Synteny	Csor.00g055250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTAGCCAGAGGTTGTCTAAGGTCCAGAGTATTTGGGCCTGAAGCTTAATTGAATGGGCCTAGCAATGCCTCAAATGGAAATAATGGGCGTTCTTGTATTCTGCTCATTCTTTGAGTACATTTCTACGGGGGCCAACGGCGAACTGCTGGCTGATATTTACTGAGGAAGAAATCTTAATTCCTGCAATCGATTTTCGAGGTAAGCTTTCGATTGATGTTGATGTCTTATCGCAGGTGAATTGAATTCGGAAATTTTCTTCAAAATTTTTCCAATTTTTGTTGTTGAATAATCTTAGGGCTTTCACTGGAGAATTTGTCGATCGGGTTTGTTTTTTTGGCTAATCTCAGAAAATAGATTTGGAGAGATCATGATTGTGTCTGATTCACCTAATTTAGTTTCATGATAGAACGATGTTCTTCGATTTTCTTGAGCGGAAACCACGATATTAAGTGAATTTCATGTTCAATGATTGTTTATTCGGCGTTTTTCCCCCGTTTGATTCGTTAGTATCTGTGGAATATACTAGAAATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGTGGGACGCACAAATTAGCCAGGTTCCTGGTAGGAGGGATCCTTACGATGATTTGCTTACGGACATCAACAATAACTCCAAGTGATAAGTGAAGGTTCTGTTTCTGTGCATTTTTCCTATCCGATTTGATTGAATTAGAGAACTGATTGAAACTTGAAAACTTCTGGGCTTTTGGAGAGATATACCAATAGATAGATCCCCCTGATGTTGTTGTTCTTGAAATACTTTGCAGGATGTTTGGTAGAGCTCTGA

mRNA sequence

ATGGGCCTAGCCAGAGGTTGTCTAAGTACATTTCTACGGGGGCCAACGGCGAACTGCTGGCTGATATTTACTGAGGAAGAAATCTTAATTCCTGCAATCGATTTTCGAGAAATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTTGATAAGTGAAGGATGTTTGGTAGAGCTCTGA

Coding sequence (CDS)

ATGGGCCTAGCCAGAGGTTGTCTAAGTACATTTCTACGGGGGCCAACGGCGAACTGCTGGCTGATATTTACTGAGGAAGAAATCTTAATTCCTGCAATCGATTTTCGAGAAATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTTGATAAGTGAAGGATGTTTGGTAGAGCTCTGA

Protein sequence

MGLARGCLSTFLRGPTANCWLIFTEEEILIPAIDFREMKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNLISEGCLVEL

Homology

[Close]

BLAST of Csor.00g055250 vs. NCBI nr
Match: KAG6601597.1 (hypothetical protein SDJN03_06830, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (585), Expect = 4.28e-76
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGLARGCLSTFLRGPTANCWLIFTEEEILIPAIDFREMKFIMEFAENLVLRLMEDPKERD 60
           MGLARGCLSTFLRGPTANCWLIFTEEEILIPAIDFREMKFIMEFAENLVLRLMEDPKERD
Sbjct: 1   MGLARGCLSTFLRGPTANCWLIFTEEEILIPAIDFREMKFIMEFAENLVLRLMEDPKERD 60

Query: 61  RKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNLISEGCLVEL 107
           RKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNLISEGCLVEL
Sbjct: 61  RKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNLISEGCLVEL 107

[Close]

BLAST of Csor.00g055250 vs. NCBI nr
Match: KAE8648679.1 (hypothetical protein Csa_008887 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 1.51e-41
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 21  LIFTEEEILIPAIDFR-------------EMKFIMEFAENLVLRLMEDPKERDRKFREHV 80
           L FTEEEI IPAIDFR             EMKFIMEFAE+LVLRLMEDPKERDR+FREH+
Sbjct: 16  LQFTEEEISIPAIDFRGLFLENFSIRNILEMKFIMEFAEDLVLRLMEDPKERDRRFREHI 75

Query: 81  YAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
           YA+KDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 76  YAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105

[Close]

BLAST of Csor.00g055250 vs. NCBI nr
Match: KAG7012731.1 (hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138 bits (347), Expect = 7.54e-39
Identity = 72/106 (67.92%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 9   STFLRGPTANCWLIFTEEEILIP--------------AIDFR---EMKFIMEFAENLVLR 68
           S FLR    NCWL  T EEI IP               + FR   EMKFIMEFAENLVLR
Sbjct: 46  SPFLR--VVNCWLTSTVEEISIPRSILKGFHLRNFRSGLLFRKKLEMKFIMEFAENLVLR 105

Query: 69  LMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
           +MEDPKERDRKFRE +YAVKDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 106 IMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 149

[Close]

BLAST of Csor.00g055250 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131 bits (330), Expect = 2.02e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. NCBI nr
Match: KAG7034709.1 (hypothetical protein SDJN02_04439, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (330), Expect = 2.02e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 9.79e-38
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 9.79e-38
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 2.30e-36
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. ExPASy TrEMBL
Match: A0A067JSF0 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17960 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 9.36e-36
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          M FIMEFAENL+LRLMEDPKERDRKFREHVYA+KDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. ExPASy TrEMBL
Match: A0A2C9UTX2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G011400 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 9.36e-36
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          M FIMEFAENL+LRLMEDPKERDRKFREHVYAVKDRC KTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MSFIMEFAENLILRLMEDPKERDRKFREHVYAVKDRCNKTKEMWSYPLRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 7.0e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ PIRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

[Close]

BLAST of Csor.00g055250 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 7.0e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ PIRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

The following BLAST results are available for this feature:

BLAST of Csor.00g055250 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g055250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601597.1	4.28e-76	100.00	hypothetical protein SDJN03_06830, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8648679.1	1.51e-41	76.67	hypothetical protein Csa_008887 [Cucumis sativus]	[more]
KAG7012731.1	7.54e-39	67.92	hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956462.1	2.02e-37	100.00	uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar...	[more]
KAG7034709.1	2.02e-37	100.00	hypothetical protein SDJN02_04439, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g055250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K907	9.79e-38	100.00	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	9.79e-38	100.00	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A6J1DD92	2.30e-36	93.33	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A067JSF0	9.36e-36	93.33	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17960 PE=4 SV=1	[more]
A0A2C9UTX2	9.36e-36	93.33	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G011400 PE=4 SV=...	[more]

BLAST of Csor.00g055250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	7.0e-24	78.33	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	7.0e-24	78.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 38..97 e-value: 2.0E-35 score: 121.3
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 38..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g055250.m01	Csor.00g055250.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I