Csor.00g054530 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g054530
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LHCP TRANSLOCATION DEFECT
Location	Csor_Chr16: 5507389 .. 5508201 (+)
RNA-Seq Expression	Csor.00g054530
Synteny	Csor.00g054530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACGTCCTTCAATTCTCGCCCCCCACTCAAATTGGGTTCTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGGAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGGTTCTTTCTTCTTGTTCTCTGGATTTCTGTTTCTTGTTCTTCAGTTTCATTGCTGTTTTGGGGCTATTTCTGATGATTTGGAAGTTCAAATTGTTCTTTACACCTCCTGTGCTTCCATGTTCTTAATCCAAAATCTATTTCTGATGATTTTGGGGCTAGTTTTGATGTTCTTAATCCAATCAATCATTCATTAAAGCTAAGCTCAACTAGCTTATGGTAGTATGTCTTATACCTCTGAACTGAGCTTAACATCATTCCTAGAAACAAGTTTTAAAGGAAGAAACATTTTTGGTTGTGCAGTATTTCAACTACATGGGAATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA

mRNA sequence

ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACGTCCTTCAATTCTCGCCCCCCACTCAAATTGGGTTCTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGGAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA

Coding sequence (CDS)

ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACGTCCTTCAATTCTCGCCCCCCACTCAAATTGGGTTCTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGGAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA

Protein sequence

MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

Homology

[Close]

BLAST of Csor.00g054530 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-52
Identity = 111/170 (65.29%), Postives = 131/170 (77.06%), Query Frame = 0


Query: 3   SVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQ 62
           S SC + S+  S  S  S  P +L SS+FLG ++    + P  +GPSNGSR TCWF   +
Sbjct: 7   SFSC-APSLATSLFSTTSSSP-RLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGK 66

Query: 63  N---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLML 122
           N   AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLML
Sbjct: 67  NGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLML 126

Query: 123 AASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 170
           AA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Sbjct: 127 AATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQK 174

[Close]

BLAST of Csor.00g054530 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.9e-46
Identity = 105/168 (62.50%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 1   MASVSCT-STSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFN 60
           MAS+ CT   S   S  S  +       ++  LG     R  + +    S     TC+F 
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGPTCFFK 60

Query: 61  L-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
              ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDILLM
Sbjct: 61  FGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS 167
           LAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Sbjct: 121 LAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAAD-DTREFILGFA 167

[Close]

BLAST of Csor.00g054530 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.9e-46
Identity = 105/168 (62.50%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 1   MASVSCT-STSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFN 60
           MAS+ CT   S   S  S  +       ++  LG     R  + +    S     TC+F 
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGPTCFFK 60

Query: 61  L-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
              ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDILLM
Sbjct: 61  FGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS 167
           LAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Sbjct: 121 LAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAAD-DTREFILGFA 167

[Close]

BLAST of Csor.00g054530 vs. NCBI nr
Match: KAG6577428.1 (Protein LHCP TRANSLOCATION DEFECT, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 338 bits (866), Expect = 6.64e-117
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170

[Close]

BLAST of Csor.00g054530 vs. NCBI nr
Match: KAG7015501.1 (Protein LHCP TRANSLOCATION DEFECT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335 bits (858), Expect = 1.10e-115
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSPTSFNSRP LKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170

[Close]

BLAST of Csor.00g054530 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 330 bits (845), Expect = 1.02e-113
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSP SFNSRPPLKLGS QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGS-QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 169

[Close]

BLAST of Csor.00g054530 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 329 bits (844), Expect = 1.45e-113
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSPTS NSRPPLKLGS QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGS-QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 169

[Close]

BLAST of Csor.00g054530 vs. NCBI nr
Match: XP_023520446.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329 bits (843), Expect = 2.06e-113
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSPTSFNSRPPLKLGS QFLGLQSN RWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPTSFNSRPPLKLGS-QFLGLQSNFRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELL+AGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLKAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 169

[Close]

BLAST of Csor.00g054530 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 330 bits (845), Expect = 4.95e-114
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSP SFNSRPPLKLGS QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGS-QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 169

[Close]

BLAST of Csor.00g054530 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 329 bits (844), Expect = 7.03e-114
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MASVSCTSTSINLSPTS NSRPPLKLGS QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGS-QFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 170
           ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Sbjct: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 169

[Close]

BLAST of Csor.00g054530 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 300 bits (769), Expect = 1.85e-102
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+SCTS SINL+P SFNSRPP KLGS  FLGLQSNLRW+SP++IGPSNGSRATCWFNL
Sbjct: 1   MASLSCTS-SINLTPRSFNSRPPFKLGS-HFLGLQSNLRWLSPVSIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           ASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 ASEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167

[Close]

BLAST of Csor.00g054530 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 8.79e-101
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+SCT TSINL+P SFNSRPP KL +S FLGLQSNLRW+SP++IGPSNGSRATCWFNL
Sbjct: 1   MASLSCT-TSINLTPRSFNSRPPFKL-ASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           ASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Sbjct: 121 ASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK 167

[Close]

BLAST of Csor.00g054530 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 8.79e-101
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+SCT TSINL+P SFNSRPP KL +S FLGLQSNLRW+SP++IGPSNGSRATCWFNL
Sbjct: 1   MASLSCT-TSINLTPRSFNSRPPFKL-ASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNL 60

Query: 61  RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120
           RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA
Sbjct: 61  RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 120

Query: 121 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           ASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Sbjct: 121 ASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK 167

[Close]

BLAST of Csor.00g054530 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 111/170 (65.29%), Postives = 131/170 (77.06%), Query Frame = 0


Query: 3   SVSCTSTSINLSPTSFNSRPPLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQ 62
           S SC + S+  S  S  S  P +L SS+FLG ++    + P  +GPSNGSR TCWF   +
Sbjct: 7   SFSC-APSLATSLFSTTSSSP-RLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGK 66

Query: 63  N---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLML 122
           N   AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLML
Sbjct: 67  NGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLML 126

Query: 123 AASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 170
           AA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Sbjct: 127 AATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQK 174

The following BLAST results are available for this feature:

BLAST of Csor.00g054530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY88	1.9e-52	65.29	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV...	[more]
A2YLX7	5.9e-46	62.50	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ...	[more]
A3BKF2	5.9e-46	62.50	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT...	[more]

BLAST of Csor.00g054530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577428.1	6.64e-117	100.00	Protein LHCP TRANSLOCATION DEFECT, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015501.1	1.10e-115	99.41	Protein LHCP TRANSLOCATION DEFECT [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022985270.1	1.02e-113	98.82	protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]	[more]
XP_022932181.1	1.45e-113	98.82	protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]	[more]
XP_023520446.1	2.06e-113	98.24	protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g054530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAV9	4.95e-114	98.82	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE...	[more]
A0A6J1EVN2	7.03e-114	98.82	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ...	[more]
A0A0A0L309	1.85e-102	89.94	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078...	[more]
A0A5D3BT07	8.79e-101	89.35	Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CJ75	8.79e-101	89.35	protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S...	[more]

BLAST of Csor.00g054530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50900.1	1.3e-53	65.29	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 92..169 e-value: 4.9E-6 score: 28.2
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 92..162
IPR044242	Protein LHCP TRANSLOCATION DEFECT-like	PANTHER	PTHR47317	PROTEIN LHCP TRANSLOCATION DEFECT	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g054530.m01	Csor.00g054530.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma