Csor.00g054350 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g054350
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 4931482 .. 4933182 (-)
RNA-Seq ExpressionCsor.00g054350
SyntenyCsor.00g054350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCAGGAGGAAGGAAGAATGAGTGAAGCTTCAGGACTGAGAGATTCTTCTTTCGTCTTGACATCAGGACTCCATATTCTAAAGGTCTCCACTTTAGTCTACTTCATCACAGATATAGTAGGCGAGAAAGAAGAGAAAAGCAAGATCAGGTAATTTCCCTGAACTGACAGATGAAATTCAGTAGAATCGGAAAGTTCGTCTTCTCTCAAGTCCCGTTTAATCAATTTAGAAACCCTGGGATGAAATTCTTCTTCCTTACTGTGATTAACCTCAAAGTCCAAGTCATAGTCAGAAACCCGAGCAGCAATAAGTCATTCAGGAAAGCTTGAGAAGGCAGTATGAATAGTTAGACATGAGGTCTTTAGAAGAATGGGATACTTAAGGTATGCTTTAGGGCCACAAAGGGATGAAATGCCAGCACCCATTGAATCTCTTCTTGATGTCTGCCTAATCTATTACTACCCGGTAAGCTACTAATTAAAGCAGGTATGAAAGACTCAATCTATAGGCTCTGAGAGCTCCTCTCTACCATATCCCCTTTCTTCCTCTGTAGGCAGAGACTGAGTAAGTTACTTATGGAAGACTTTCATTTCATTAGCTACTTACTTTAGAAGCAAGAGTTAATATCTCTTCTCTGCCGAAAGATCACTTGATTGGTTTAAACTCCTCTTTGCTTGAATAAAGTCAAAAGCAAAGGTCAAGAAAGCATTCTAACTCCTTTCACTCCTTTACTGTACAGATCAGCTAGGAAATCAAAGTCTAAAATGTGACTTTTAAAGGACAGGGCTTCCAGCTATAGAAGTTCTAGTCAGGTATGTCCCTGTTCTCTTCCCTCTTCCCATTGACTATTCATCTCTTGGTCAAGCCCTTCCTTAGGAAGAAAAACTATAGAATACAACTAGTCAACAAGGCTAGTTGGAAGCGGTTTAAAAAGAAGACATTTATAAGACTACTCTTCTGACTGACTTACTTATAATTCGAAGGTCAATGAAATCAATCACCCATATTCTGCCTGAAAACTACCTTTTATCCACTTAAGAGATCACTGCGTCTTCATCAGTGTCATTAAGTAGTGTAATCAGAGTAGTTAAGGACTATCACTCAACTGAGACTTACTCCCTCAAACTTTGAACCGAGCAAGAGGCAGGAATGGAATAGAATCACTGGTGCAGGAATTGAATCATGGGGCTAAGGGTCCACTAAATTGACTCTAGTGGTTAGAAAGTCAAAGTAGAAGAAGAAATTAGACTGCAACTTCGTACGTAAGGCCCGCCTGATCTTAAGGTATAGGCTCGGGCTTCTTTATTCAACAACAAACCGGTTGGATCCCTTTGGCTTTTGGCTTAAGTAACTGCTATAAGGGATATTGGAAGTTATTCTGTTGAGATAAGGGTTACAACCTCCCTCCTTTGAACTGATTTCCGGCTCTAAATCCTTAGATTGAGGACAGACAGCATAATTAGCAATTGAATCTCCGGGATGGGCTAATTAGATTAGACTTTCAACTGCATAAGTTCCCCAGTCTGAGCCTACAACAATAGGACCGAGGCAGGACTTGAGAGAAGCGATTCAATAGCACATGGAATAGCCCAGAGGGACAGAGAGGAGCCAAGCAGTGAGACAAGGAACCAACCAACCGACCGGGGACAAGAGAGGAGAGGCAATGAAAGACGAATAGGTGACGGGAGAGGAGAATGA

mRNA sequence

ATGAACCAGGAGGAAGGAAGAATGAGTGAAGCTTCAGGACTGAGAGATTCTTCTTTCGTCTTGACATCAGGACTCCATATTCTAAAGGTCTCCACTTTAGTCTACTTCATCACAGATATAGTAGGCGAGAAAGAAGAGAAAAGCAAGATCAGGACCGAGGCAGGACTTGAGAGAAGCGATTCAATAGCACATGGAATAGCCCAGAGGGACAGAGAGGAGCCAAGCAGTGAGACAAGGAACCAACCAACCGACCGGGGACAAGAGAGGAGAGGCAATGAAAGACGAATAGGTGACGGGAGAGGAGAATGA

Coding sequence (CDS)

ATGAACCAGGAGGAAGGAAGAATGAGTGAAGCTTCAGGACTGAGAGATTCTTCTTTCGTCTTGACATCAGGACTCCATATTCTAAAGGTCTCCACTTTAGTCTACTTCATCACAGATATAGTAGGCGAGAAAGAAGAGAAAAGCAAGATCAGGACCGAGGCAGGACTTGAGAGAAGCGATTCAATAGCACATGGAATAGCCCAGAGGGACAGAGAGGAGCCAAGCAGTGAGACAAGGAACCAACCAACCGACCGGGGACAAGAGAGGAGAGGCAATGAAAGACGAATAGGTGACGGGAGAGGAGAATGA

Protein sequence

MNQEEGRMSEASGLRDSSFVLTSGLHILKVSTLVYFITDIVGEKEEKSKIRTEAGLERSDSIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE
Homology
[Close]
BLAST of Csor.00g054350 vs. NCBI nr
Match: KAG6577415.1 (hypothetical protein SDJN03_24989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 3.78e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MNQEEGRMSEASGLRDSSFVLTSGLHILKVSTLVYFITDIVGEKEEKSKIRTEAGLERSD 60
           MNQEEGRMSEASGLRDSSFVLTSGLHILKVSTLVYFITDIVGEKEEKSKIRTEAGLERSD
Sbjct: 1   MNQEEGRMSEASGLRDSSFVLTSGLHILKVSTLVYFITDIVGEKEEKSKIRTEAGLERSD 60

Query: 61  SIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE 102
           SIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE
Sbjct: 61  SIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE 102

[Close]
BLAST of Csor.00g054350 vs. NCBI nr
Match: KAG6583638.1 (hypothetical protein SDJN03_19570, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (471), Expect = 7.34e-59
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MNQEEGRMSEASGLRDSSFVLTSGLHILKVSTLVYFITDIVGEKEEKSKIRTEAGLERSD 60
           MNQEEGRMSEAS LRDSSFVLT GLHILKVSTLVYFITDI+GEKEEKSK+RTEAGLERSD
Sbjct: 1   MNQEEGRMSEASRLRDSSFVLTPGLHILKVSTLVYFITDIIGEKEEKSKVRTEAGLERSD 60

Query: 61  SIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE 102
           SIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE
Sbjct: 61  SIAHGIAQRDREEPSSETRNQPTDRGQERRGNERRIGDGRGE 102

The following BLAST results are available for this feature:
BLAST of Csor.00g054350 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g054350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577415.13.78e-61100.00hypothetical protein SDJN03_24989, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583638.17.34e-5996.08hypothetical protein SDJN03_19570, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g054350 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g054350 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g054350.m01Csor.00g054350.m01mRNA