Csor.00g054250 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g054250
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr15: 7511244 .. 7511597 (+)
RNA-Seq ExpressionCsor.00g054250
SyntenyCsor.00g054250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAACTCTTGTGCTTCCTACAGAGCCATCTTGCCTTGTTGCCTCAAGGTCGATGCAGCACACAACCAGGTGGAAGCTTTGAAGATTGTTAAACCAGATGGGAGGGTGTTGGGGTTCACCACGCCAACGCTCAAACCCAGCCTCATGGATGATTCAGACAAACCCAGCAGCACAAGGAGAGTCAGAATCGTTTTAACAAAGAAGCAGCTCAAGCTGTTGGTGGACAAACAAGTGTCAATGGAAGAGCTACTTATGCAGCAGATTGAGAAAACCACGTTGTGCAGTGTTCTTGAATGTTCATCATCTTGGAAGCCTGCACTGGCAGCCATTCCTGAAGGAAATGAAGCATAA

mRNA sequence

ATGGGTAACTCTTGTGCTTCCTACAGAGCCATCTTGCCTTGTTGCCTCAAGGTCGATGCAGCACACAACCAGGTGGAAGCTTTGAAGATTGTTAAACCAGATGGGAGGGTGTTGGGGTTCACCACGCCAACGCTCAAACCCAGCCTCATGGATGATTCAGACAAACCCAGCAGCACAAGGAGAGTCAGAATCGTTTTAACAAAGAAGCAGCTCAAGCTGTTGGTGGACAAACAAGTGTCAATGGAAGAGCTACTTATGCAGCAGATTGAGAAAACCACGTTGTGCAGTGTTCTTGAATGTTCATCATCTTGGAAGCCTGCACTGGCAGCCATTCCTGAAGGAAATGAAGCATAA

Coding sequence (CDS)

ATGGGTAACTCTTGTGCTTCCTACAGAGCCATCTTGCCTTGTTGCCTCAAGGTCGATGCAGCACACAACCAGGTGGAAGCTTTGAAGATTGTTAAACCAGATGGGAGGGTGTTGGGGTTCACCACGCCAACGCTCAAACCCAGCCTCATGGATGATTCAGACAAACCCAGCAGCACAAGGAGAGTCAGAATCGTTTTAACAAAGAAGCAGCTCAAGCTGTTGGTGGACAAACAAGTGTCAATGGAAGAGCTACTTATGCAGCAGATTGAGAAAACCACGTTGTGCAGTGTTCTTGAATGTTCATCATCTTGGAAGCCTGCACTGGCAGCCATTCCTGAAGGAAATGAAGCATAA

Protein sequence

MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTRRVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Homology
BLAST of Csor.00g054250 vs. NCBI nr
Match: KAG6579294.1 (hypothetical protein SDJN03_23742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (584), Expect = 1.28e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTR 60
           MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTR
Sbjct: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTR 60

Query: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117
           RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Sbjct: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117

BLAST of Csor.00g054250 vs. NCBI nr
Match: XP_022922389.1 (uncharacterized protein LOC111430396 [Cucurbita moschata] >KAG7016794.1 hypothetical protein SDJN02_21905, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (581), Expect = 3.66e-75
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTR 60
           MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDG+VLGFTTPTLKPSLMDDSDKPSSTR
Sbjct: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTR 60

Query: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117
           RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Sbjct: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117

BLAST of Csor.00g054250 vs. NCBI nr
Match: XP_023551614.1 (uncharacterized protein LOC111809394 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (546), Expect = 7.99e-70
Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = 0

Query: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTR 60
           MGNSCASYRAILPCCLKVDAAH QVE L+IVKPDG+VL  TTPTLKP+LMDDSDKPSSTR
Sbjct: 1   MGNSCASYRAILPCCLKVDAAHKQVEPLEIVKPDGKVLELTTPTLKPNLMDDSDKPSSTR 60

Query: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117
           RV+IVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Sbjct: 61  RVKIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117

BLAST of Csor.00g054250 vs. NCBI nr
Match: XP_038875983.1 (uncharacterized protein LOC120068327 [Benincasa hispida])

HSP 1 Score: 137 bits (345), Expect = 3.00e-38
Identity = 86/169 (50.89%), Postives = 100/169 (59.17%), Query Frame = 0

Query: 1   MGNSCASYRAILPCCLKVDAAHN--QVEALKIVKPDGRVLGFTTPTLKPSLM-------- 60
           MGNSC SYR  LPCCLKVDAAH   Q EALKIVK DG+VL F TPTL   ++        
Sbjct: 23  MGNSCVSYRIKLPCCLKVDAAHRKKQGEALKIVKSDGKVLEFITPTLVKDVLVNFSGFVI 82

Query: 61  ------------------------------------------DDSDKPSSTRRVRIVLTK 117
                                                     +DSDK S+T+RVRIVLTK
Sbjct: 83  GSSQDASHHHYLSPDFELKMGQVYYMLPSPQPTALLPPHSFTEDSDKSSNTKRVRIVLTK 142

BLAST of Csor.00g054250 vs. NCBI nr
Match: XP_011654573.1 (uncharacterized protein LOC105435418 [Cucumis sativus] >KGN49817.1 hypothetical protein Csa_000603 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 2.38e-33
Identity = 84/170 (49.41%), Postives = 96/170 (56.47%), Query Frame = 0

Query: 1   MGNSCA-SYRAILPCCLKVDAAH--NQVEALKIVKPDGRVLGFTTPTL------------ 60
           MGNSC  SY    PCCLKVDAAH  N  EALKIVK DG+VL FTTPTL            
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLEFTTPTLVKDVLVNFTGFV 60

Query: 61  -------------------------------KP-------SLMDDSDKPSSTRRVRIVLT 117
                                          +P       S + DS K  STRRVRIVLT
Sbjct: 61  IGSSQDVSHHHHLSPEFELKMGQVYYMLPSPQPTALPPPHSFIQDSHKSRSTRRVRIVLT 120

BLAST of Csor.00g054250 vs. ExPASy TrEMBL
Match: A0A6J1E387 (uncharacterized protein LOC111430396 OS=Cucurbita moschata OX=3662 GN=LOC111430396 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.77e-75
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGRVLGFTTPTLKPSLMDDSDKPSSTR 60
           MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDG+VLGFTTPTLKPSLMDDSDKPSSTR
Sbjct: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTR 60

Query: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117
           RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Sbjct: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117

BLAST of Csor.00g054250 vs. ExPASy TrEMBL
Match: A0A0A0KN21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138490 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.15e-33
Identity = 84/170 (49.41%), Postives = 96/170 (56.47%), Query Frame = 0

Query: 1   MGNSCA-SYRAILPCCLKVDAAH--NQVEALKIVKPDGRVLGFTTPTL------------ 60
           MGNSC  SY    PCCLKVDAAH  N  EALKIVK DG+VL FTTPTL            
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLEFTTPTLVKDVLVNFTGFV 60

Query: 61  -------------------------------KP-------SLMDDSDKPSSTRRVRIVLT 117
                                          +P       S + DS K  STRRVRIVLT
Sbjct: 61  IGSSQDVSHHHHLSPEFELKMGQVYYMLPSPQPTALPPPHSFIQDSHKSRSTRRVRIVLT 120

BLAST of Csor.00g054250 vs. ExPASy TrEMBL
Match: A0A5A7TGH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00040 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 2.66e-32
Identity = 80/170 (47.06%), Postives = 94/170 (55.29%), Query Frame = 0

Query: 1   MGNSCA-SYRAILPCCLKVDAAH--NQVEALKIVKPDGRVLGFTTPTLKPSLM------- 60
           MGNSC  SY    PCCLKVDAAH  N  EALKIVK DG+VL FTTPTL   ++       
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLQFTTPTLVKDVLVNFTGFV 60

Query: 61  -------------------------------------------DDSDKPSSTRRVRIVLT 117
                                                       D  K SSTRRVRIVLT
Sbjct: 61  IGSSQDVSDHHHLSPDFELKMGQVYYMLPSPQAAAPPPPHTFIQDLHKSSSTRRVRIVLT 120

BLAST of Csor.00g054250 vs. ExPASy TrEMBL
Match: A0A1S3AUP7 (uncharacterized protein LOC103483007 OS=Cucumis melo OX=3656 GN=LOC103483007 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 2.66e-32
Identity = 80/170 (47.06%), Postives = 94/170 (55.29%), Query Frame = 0

Query: 1   MGNSCA-SYRAILPCCLKVDAAH--NQVEALKIVKPDGRVLGFTTPTLKPSLM------- 60
           MGNSC  SY    PCCLKVDAAH  N  EALKIVK DG+VL FTTPTL   ++       
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLQFTTPTLVKDVLVNFTGFV 60

Query: 61  -------------------------------------------DDSDKPSSTRRVRIVLT 117
                                                       D  K SSTRRVRIVLT
Sbjct: 61  IGSSQDVSDHHHLSPDFELKMGQVYYMLPSPQAAAPPPPHTFIQDLHKSSSTRRVRIVLT 120

BLAST of Csor.00g054250 vs. ExPASy TrEMBL
Match: A0A2N9IS98 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56209 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.93e-09
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 41  TTPTLKPSLMDDSDKPSSTRRVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLEC 100
           T+P    S+  D +K +  +R++IV+TK+QL+ L+ KQ+S+E++L   +EK   C+ L+ 
Sbjct: 93  TSPADISSIAHDKEKANGVKRIKIVITKQQLQELLKKQISVEDIL-SGLEKRA-CNTLDS 152

Query: 101 SSSWKPALAAIPEGNE 116
           +++WKP L AIPEG+E
Sbjct: 153 TTNWKPRLEAIPEGSE 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6579294.11.28e-75100.00hypothetical protein SDJN03_23742, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022922389.13.66e-7599.15uncharacterized protein LOC111430396 [Cucurbita moschata] >KAG7016794.1 hypothet... [more]
XP_023551614.17.99e-7093.16uncharacterized protein LOC111809394 [Cucurbita pepo subsp. pepo][more]
XP_038875983.13.00e-3850.89uncharacterized protein LOC120068327 [Benincasa hispida][more]
XP_011654573.12.38e-3349.41uncharacterized protein LOC105435418 [Cucumis sativus] >KGN49817.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A6J1E3871.77e-7599.15uncharacterized protein LOC111430396 OS=Cucurbita moschata OX=3662 GN=LOC1114303... [more]
A0A0A0KN211.15e-3349.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138490 PE=4 SV=1[more]
A0A5A7TGH52.66e-3247.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AUP72.66e-3247.06uncharacterized protein LOC103483007 OS=Cucumis melo OX=3656 GN=LOC103483007 PE=... [more]
A0A2N9IS982.93e-0942.11Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56209 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33148:SF2DUF4228 DOMAIN PROTEINcoord: 53..116
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 53..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g054250.m01Csor.00g054250.m01mRNA