Csor.00g054190 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g054190
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionauxin-responsive protein SAUR32-like
LocationCsor_Chr15: 7536910 .. 7538467 (-)
RNA-Seq ExpressionCsor.00g054190
SyntenyCsor.00g054190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTTGGCGGCAGTGGCGGCGGTGGCGACAAGCATCAGCACCTCCTGCATCTGAATTTCCATTTCCATATTCATTTGCCTCACTTTCACCACCATCATCATCGGAACAAGGTGGAGACTCCCAAGGGGTGTTTGGCAATTCTCGTCGGCCAACAGCAAGAGCGGTTCGTGATTCCTGTCATTTATGTTAACCATCCTTTGTTCGCTCGGCTCTTGAAGGAGGCCGAAGACGAGTATGGCTTCGACCAGAAAGGACCTATCGCCATCCCTTGCCCTGTCGACGACTTCCGTACTCTCCAGGGCATAATTCATCACGATCATCACCCCCATCATCTTCTTCCCATCTCCTGTTTTAGGGATTCGTCTCATCCCCATTGCTGATATTGATGAATACCGACCTTAGTTCTTAGTTTTGGGTCCTCTTCGTTTGTTTGTTAATTTTCTGATACACATAACCAATAGCAATTCATGCGTTACCATTGCTTTCTGGAAGTGGAATTGGAATTTCCTCTGTTTATACATTCAAATTATTGTCACTGTCAACATGGTCTAGCTTGCCATTGAATGTTGTATCATATACGAGCTTCTTCAGCCTCAATCATGATGATTAATCTCTGTTTCTTCCTAGTTAAAATTCAAATAACGTAATCAAAACTGTCTGAAATTGATTCTCGGAAGGATATTTGACCATTGGAACTCTTTTATCTTTCTAAATTGGCCCGTTTGACTTCAAAAAATGAGGGATCTCTATCCCATGGGAAAAGGGGTGGGTGGAGATTGCTTTGCTTGTAAGGATGTAATAACTTTTTATTATTCTTTCTGGCAATGACACCTACAGCTTTGCTGACGCGTTTTTCTGTGTATACTAAATCCTCCCTTGAATAACGCTAAGTCAAATTCTCTTTAGAACATTATTATGCTTCTTCCACTTCAGTATGTATTGCATTACAGTCTTGCAGATGCCATCATTGACTTCCCAATTATGACCATCCATAGCCCACATGGAATGGACGACATCAGCTCACCCCACCTCAACCCCATCAGTATTCTTACTTTCCTGTTTCCCTTCATTGCTTTTCTTTTATTCATATATTCATTACGTTTGGAAGTAACTCGATATGTCAAGACTAAACCCATATGTTTACAGAAAAACATAAAAAAGAAACAGAATGAAGAATTCTAAAATCTTGAAAACTATATCTTCAAACGTTTATTTCAATTGAGCACTTAAGTTTGGGAGAATGAAAGAACATAATATAGCATATCAGTTTGGCAAGTCTCAGTAAAATCTGTATTCTGATCTCTGCCTTGTTTTTACATGTAGGAAGGATTATAAAGAACTGGGCGGTGAAATGGGAAAGAATGCAATACATGGTACATCCTCGTTTCTTTTTATGTTTCTCAATCGCATGGCCCTCTTTTATTCAGTGTTTTGAAGCTGCTAGGAATCAAATTGATAATACAATAAGGAGAAAAAAATGAATCAAGTGTACAGCTATTGAACTATCTGCTTCTTCTGTGTGTTAATGTCTTGTATTAGAGTAGCGGATTGTAA

mRNA sequence

ATGGGGTTTGGCGGCAGTGGCGGCGGTGGCGACAAGCATCAGCACCTCCTGCATCTGAATTTCCATTTCCATATTCATTTGCCTCACTTTCACCACCATCATCATCGGAACAAGGTGGAGACTCCCAAGGGGTGTTTGGCAATTCTCGTCGGCCAACAGCAAGAGCGTCTTGCAGATGCCATCATTGACTTCCCAATTATGACCATCCATAGCCCACATGGAATGGACGACATCAGCTCACCCCACCTCAACCCCATCAGAAGGATTATAAAGAACTGGGCGGTGAAATGGGAAAGAATGCAATACATGAGTAGCGGATTGTAA

Coding sequence (CDS)

ATGGGGTTTGGCGGCAGTGGCGGCGGTGGCGACAAGCATCAGCACCTCCTGCATCTGAATTTCCATTTCCATATTCATTTGCCTCACTTTCACCACCATCATCATCGGAACAAGGTGGAGACTCCCAAGGGGTGTTTGGCAATTCTCGTCGGCCAACAGCAAGAGCGTCTTGCAGATGCCATCATTGACTTCCCAATTATGACCATCCATAGCCCACATGGAATGGACGACATCAGCTCACCCCACCTCAACCCCATCAGAAGGATTATAAAGAACTGGGCGGTGAAATGGGAAAGAATGCAATACATGAGTAGCGGATTGTAA

Protein sequence

MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADAIIDFPIMTIHSPHGMDDISSPHLNPIRRIIKNWAVKWERMQYMSSGL
Homology
BLAST of Csor.00g054190 vs. NCBI nr
Match: KAG6579300.1 (hypothetical protein SDJN03_23748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230 bits (587), Expect = 2.12e-76
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADA 60
           MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADA
Sbjct: 1   MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADA 60

Query: 61  IIDFPIMTIHSPHGMDDISSPHLNPIRRIIKNWAVKWERMQYMSSGL 107
           IIDFPIMTIHSPHGMDDISSPHLNPIRRIIKNWAVKWERMQYMSSGL
Sbjct: 61  IIDFPIMTIHSPHGMDDISSPHLNPIRRIIKNWAVKWERMQYMSSGL 107

BLAST of Csor.00g054190 vs. NCBI nr
Match: KAG7016800.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (311), Expect = 1.15e-33
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADA 60
          MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQER    
Sbjct: 1  MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIP 60

Query: 61 II 62
          +I
Sbjct: 61 VI 62

BLAST of Csor.00g054190 vs. NCBI nr
Match: XP_022974339.1 (auxin-responsive protein SAUR32-like [Cucurbita maxima])

HSP 1 Score: 117 bits (293), Expect = 2.74e-31
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MGFGGSGGGG---DKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERL 60
          MGFGG GGGG   DKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQER 
Sbjct: 1  MGFGGGGGGGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERF 60

Query: 61 ADAII 62
             +I
Sbjct: 61 VIPVI 65

BLAST of Csor.00g054190 vs. NCBI nr
Match: XP_023549648.1 (auxin-responsive protein SAUR32 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 2.74e-31
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MGFGGSGGGG---DKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERL 60
          MGFGG GGGG   DKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQER 
Sbjct: 1  MGFGGGGGGGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERF 60

Query: 61 ADAII 62
             +I
Sbjct: 61 VIPVI 65

BLAST of Csor.00g054190 vs. NCBI nr
Match: KGN49830.1 (hypothetical protein Csa_000428 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.03e-19
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 7  GGGGDKH--QHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADAII 62
          G GGDKH  QHLLHLNFHFH+H PHF+HH  RNKVETPKGCLAILVGQ+Q+R    +I
Sbjct: 2  GFGGDKHHHQHLLHLNFHFHVHFPHFYHH--RNKVETPKGCLAILVGQEQQRFFIPVI 57

BLAST of Csor.00g054190 vs. ExPASy TrEMBL
Match: A0A6J1IHB8 (auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111472971 PE=3 SV=1)

HSP 1 Score: 117 bits (293), Expect = 1.33e-31
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MGFGGSGGGG---DKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERL 60
          MGFGG GGGG   DKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQER 
Sbjct: 1  MGFGGGGGGGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERF 60

Query: 61 ADAII 62
             +I
Sbjct: 61 VIPVI 65

BLAST of Csor.00g054190 vs. ExPASy TrEMBL
Match: A0A0A0KJC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139100 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.82e-20
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 7  GGGGDKH--QHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADAII 62
          G GGDKH  QHLLHLNFHFH+H PHF+HH  RNKVETPKGCLAILVGQ+Q+R    +I
Sbjct: 2  GFGGDKHHHQHLLHLNFHFHVHFPHFYHH--RNKVETPKGCLAILVGQEQQRFFIPVI 57

BLAST of Csor.00g054190 vs. ExPASy TrEMBL
Match: A0A6J1H1R3 (auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC111459565 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.19e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 12 KHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADAII 62
          KHQHL  LNFH  +HLPHFHH   R+K +TPKGCLA+LVGQ+QER    +I
Sbjct: 2  KHQHLPPLNFH--LHLPHFHH---RSKPDTPKGCLAVLVGQEQERFVIPVI 47

BLAST of Csor.00g054190 vs. ExPASy TrEMBL
Match: A0A2G2X7E4 (Auxin-responsive protein SAUR32 OS=Capsicum baccatum OX=33114 GN=CQW23_07865 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.20e-10
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 8  GGGDKHQHLLH-LNFHFHIHLPHFHHHH-HRNKVET----PKGCLAILVGQQQERLADAI 67
          G GDKH H  H L FH  +HLP FHHHH H N +E     PKGC+A++VGQ +E+    I
Sbjct: 2  GSGDKHHHHHHHLKFHVQLHLPSFHHHHGHENSIEELRDIPKGCVAVMVGQGEEQQRFVI 61

Query: 68 IDFPIMTIHSP-------HGMDDISSPHLNPI 86
             P+M I+ P          D++   H  PI
Sbjct: 62 ---PVMHINHPLFVQLLKGAEDEVEFRHDGPI 90

BLAST of Csor.00g054190 vs. ExPASy TrEMBL
Match: A0A2G3CXV7 (Auxin-responsive protein SAUR32 OS=Capsicum chinense OX=80379 GN=BC332_08651 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.20e-10
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 8  GGGDKHQHLLH-LNFHFHIHLPHFHHHH-HRNKVET----PKGCLAILVGQQQERLADAI 67
          G GDKH H  H L FH  +HLP FHHHH H N +E     PKGC+A++VGQ +E+    I
Sbjct: 2  GSGDKHHHHHHHLKFHVQLHLPSFHHHHGHENSIEELRDIPKGCVAVMVGQGEEQQRFVI 61

Query: 68 IDFPIMTIHSP-------HGMDDISSPHLNPI 86
             P+M I+ P          D++   H  PI
Sbjct: 62 ---PVMHINHPLFVQLLKGAEDEVEFRHDGPI 90

BLAST of Csor.00g054190 vs. TAIR 10
Match: AT5G53590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 51.2 bits (121), Expect = 5.9e-07
Identity = 24/65 (36.92%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 15 HLLHLNFHFHIHLPHFH---HHHHRNKVETPKGCLAILVGQQQERLADAIIDFPIMTIHS 74
          H+ H+ F FH H+PH H   HHHH +  + PKGC+AI+VG + +         P++ +  
Sbjct: 17 HIKHMVFKFHFHVPHLHILPHHHHHHHHDVPKGCVAIMVGHEDDEEGLHRFVVPLVFLSH 76

Query: 75 PHGMD 77
          P  +D
Sbjct: 77 PLFLD 81

BLAST of Csor.00g054190 vs. TAIR 10
Match: AT4G00880.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 41.2 bits (95), Expect = 6.1e-04
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 8  GGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERLADAIIDFPIM 67
          G GDK      +  H+  H+P  HHH H ++ + PKGCLA+ VGQ +E+    I   P+M
Sbjct: 2  GNGDK------VMSHWSFHIPRLHHHEHDHE-KVPKGCLAVKVGQGEEQERFVI---PVM 56

Query: 68 TIHSP 73
            + P
Sbjct: 62 YFNHP 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6579300.12.12e-76100.00hypothetical protein SDJN03_23748, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7016800.11.15e-3391.94Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022974339.12.74e-3186.15auxin-responsive protein SAUR32-like [Cucurbita maxima][more]
XP_023549648.12.74e-3186.15auxin-responsive protein SAUR32 [Cucurbita pepo subsp. pepo][more]
KGN49830.12.03e-1974.14hypothetical protein Csa_000428 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1IHB81.33e-3186.15auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111472971... [more]
A0A0A0KJC79.82e-2074.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139100 PE=3 SV=1[more]
A0A6J1H1R36.19e-1264.71auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC1114595... [more]
A0A2G2X7E48.20e-1042.39Auxin-responsive protein SAUR32 OS=Capsicum baccatum OX=33114 GN=CQW23_07865 PE=... [more]
A0A2G3CXV78.20e-1042.39Auxin-responsive protein SAUR32 OS=Capsicum chinense OX=80379 GN=BC332_08651 PE=... [more]
Match NameE-valueIdentityDescription
AT5G53590.15.9e-0736.92SAUR-like auxin-responsive protein family [more]
AT4G00880.16.1e-0438.46SAUR-like auxin-responsive protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g054190.m01Csor.00g054190.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin