Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGGTTTTGATTCCCCATAATTTCTCTCGGCCGCCCCGGCTGTCACGTTTTATAGCCATCGCCGTCGCCATCGCCGTCGCCATCGCCGGCAACCGCCTCGCTTCCCTCTGCCCCGTCGTTCATTTCCCCCTTCAGCGGCGGAAGCCCAGCCGTCGTGCCGCCCAAAGGGTGTGAGATTCAGAGACCAATCTCTTGCCCCAAAGAAATCAAAATCAATTAAACGATGCAGAGAGCTGCCGGTTGAGATGACGGCGGAGGCTTTGATCGTTGATTCCACAAATCGAATGGGGCCGGAGCCGAGCCATGTTCCTAAAGATTTATGGGTCGTTTTAGGATTACGTTTGCCGCCGCCGTCGCCACCGCCCTGGGAAGGTAGCAGGAGTTTGGGGGTGGCGGCAGAGATTGAATTTTCTGGTTCGGCGTTTAACGTTTCGCCGCCGCCGAGTAGCGTGCCGCTTCCGAATTTCCCTCTGATGCGGAAGCTGAATTGTAATGTACAGGCCGCTGCCGGAATTGACGCCGGAGCCACCGACAATCTCCGGCGACTTCTACGCCTCCGATGA
mRNA sequence
ATGGAGGCGGTTTTGATTCCCCATAATTTCTCTCGGCCGCCCCGGCTGTCACGTTTTATAGCCATCGCCGTCGCCATCGCCGTCGCCATCGCCGGCAACCGCCTCGCTTCCCTCTGCCCCGTCGTTCATTTCCCCCTTCAGCGGCGGAAGCCCAGCCGTCGTGCCGCCCAAAGGGTAGAGCTGCCGGTTGAGATGACGGCGGAGGCTTTGATCGTTGATTCCACAAATCGAATGGGGCCGGAGCCGAGCCATGTTCCTAAAGATTTATGGGTCGTTTTAGGATTACGTTTGCCGCCGCCGTCGCCACCGCCCTGGGAAGGTAGCAGGAGTTTGGGGGTGGCGGCAGAGATTGAATTTTCTGGTTCGGCGTTTAACGTTTCGCCGCCGCCGAGTAGCGTGCCGCTTCCGAATTTCCCTCTGATGCGGAAGCTGAATTGTAATGTACAGGCCGCTGCCGGAATTGACGCCGGAGCCACCGACAATCTCCGGCGACTTCTACGCCTCCGATGA
Coding sequence (CDS)
ATGGAGGCGGTTTTGATTCCCCATAATTTCTCTCGGCCGCCCCGGCTGTCACGTTTTATAGCCATCGCCGTCGCCATCGCCGTCGCCATCGCCGGCAACCGCCTCGCTTCCCTCTGCCCCGTCGTTCATTTCCCCCTTCAGCGGCGGAAGCCCAGCCGTCGTGCCGCCCAAAGGGTAGAGCTGCCGGTTGAGATGACGGCGGAGGCTTTGATCGTTGATTCCACAAATCGAATGGGGCCGGAGCCGAGCCATGTTCCTAAAGATTTATGGGTCGTTTTAGGATTACGTTTGCCGCCGCCGTCGCCACCGCCCTGGGAAGGTAGCAGGAGTTTGGGGGTGGCGGCAGAGATTGAATTTTCTGGTTCGGCGTTTAACGTTTCGCCGCCGCCGAGTAGCGTGCCGCTTCCGAATTTCCCTCTGATGCGGAAGCTGAATTGTAATGTACAGGCCGCTGCCGGAATTGACGCCGGAGCCACCGACAATCTCCGGCGACTTCTACGCCTCCGATGA
Protein sequence
MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRKPSRRAAQRVELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLLRLR
Homology
BLAST of Csor.00g053210 vs. NCBI nr
Match:
KAG6585532.1 (hypothetical protein SDJN03_18265, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 335 bits (860), Expect = 5.06e-116
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRKPSRRAAQRVE 60
MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRKPSRRAAQRVE
Sbjct: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRKPSRRAAQRVE 60
Query: 61 LPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFS 120
LPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFS
Sbjct: 61 LPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFS 120
Query: 121 GSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLLRLR 169
GSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLLRLR
Sbjct: 121 GSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLLRLR 169
BLAST of Csor.00g053210 vs. NCBI nr
Match:
KAG7020445.1 (hypothetical protein SDJN02_17129, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 228 bits (581), Expect = 3.22e-73
Identity = 133/196 (67.86%), Postives = 135/196 (68.88%), Query Frame = 0
Query: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRK--PSRRAAQR 60
MEAVLIPHNFS A AV +R FPL RR PS AQ
Sbjct: 1 MEAVLIPHNFSPA-------APAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQP 60
Query: 61 V-------------------------ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL
Sbjct: 61 SCRPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
Query: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAG 169
GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRK+NCNVQAAAG
Sbjct: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAG 180
BLAST of Csor.00g053210 vs. NCBI nr
Match:
XP_023538239.1 (uncharacterized protein LOC111799074 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 221 bits (562), Expect = 2.50e-70
Identity = 128/192 (66.67%), Postives = 139/192 (72.40%), Query Frame = 0
Query: 1 MEAVLIPHNFS---------------------RPPRLSRFIAIAVAIAVAIAGNRLASLC 60
MEAVLIPHNFS +PPR F + + A ++ +
Sbjct: 1 MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPR---FPFPRRSFPPSAAESQPSCRP 60
Query: 61 PVVHFPLQRRKPSR-RAAQRV-ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRL 120
V F Q P + ++ +R ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRL
Sbjct: 61 KGVRFRDQSLAPKKPKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRL 120
Query: 121 PPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAG 169
PPP PPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNF LMRKLNCNV+AAAGIDAG
Sbjct: 121 PPPLPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFSLMRKLNCNVEAAAGIDAG 180
BLAST of Csor.00g053210 vs. NCBI nr
Match:
XP_022951686.1 (uncharacterized protein LOC111454434 [Cucurbita moschata])
HSP 1 Score: 218 bits (554), Expect = 3.61e-69
Identity = 130/196 (66.33%), Postives = 132/196 (67.35%), Query Frame = 0
Query: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRK--PSRRAAQR 60
MEAVLIPHNFS A AV +R FPL RR PS AQ
Sbjct: 1 MEAVLIPHNFS-----------PAAPAVTFYSHRRRHRRQPPRFPLPRRSFPPSAAEAQP 60
Query: 61 V-------------------------ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
ELPVEMTAEALIVDSTNRMGPEPSHVPKDL VVL
Sbjct: 61 SCRPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLCVVL 120
Query: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAG 169
GLRLPPPS PP EGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNV+AAAG
Sbjct: 121 GLRLPPPSSPPREGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVEAAAG 180
BLAST of Csor.00g053210 vs. NCBI nr
Match:
XP_023002514.1 (uncharacterized protein LOC111496332 [Cucurbita maxima])
HSP 1 Score: 214 bits (544), Expect = 1.20e-67
Identity = 125/196 (63.78%), Postives = 130/196 (66.33%), Query Frame = 0
Query: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRK--PSRRAAQR 60
MEAVLIPHNFS A AV +R FPL RR PS AQ
Sbjct: 1 MEAVLIPHNFS-----------PAAPAVTFYSHRRRHRRQPPRFPLPRRSFPPSEAEAQP 60
Query: 61 V-------------------------ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
ELPVEMTAEALIVDSTNR+GPEPSHVPKDLWVVL
Sbjct: 61 SCGPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRLGPEPSHVPKDLWVVL 120
Query: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAG 169
GLRLPPP P PWE SRSLGVAAEIEFSGSAF+VSPPPSSVPLPNF LMRKLNCNV+AAAG
Sbjct: 121 GLRLPPPPPRPWEDSRSLGVAAEIEFSGSAFSVSPPPSSVPLPNFSLMRKLNCNVEAAAG 180
BLAST of Csor.00g053210 vs. ExPASy TrEMBL
Match:
A0A6J1GI76 (uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC111454434 PE=4 SV=1)
HSP 1 Score: 218 bits (554), Expect = 1.75e-69
Identity = 130/196 (66.33%), Postives = 132/196 (67.35%), Query Frame = 0
Query: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRK--PSRRAAQR 60
MEAVLIPHNFS A AV +R FPL RR PS AQ
Sbjct: 1 MEAVLIPHNFS-----------PAAPAVTFYSHRRRHRRQPPRFPLPRRSFPPSAAEAQP 60
Query: 61 V-------------------------ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
ELPVEMTAEALIVDSTNRMGPEPSHVPKDL VVL
Sbjct: 61 SCRPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLCVVL 120
Query: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAG 169
GLRLPPPS PP EGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNV+AAAG
Sbjct: 121 GLRLPPPSSPPREGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVEAAAG 180
BLAST of Csor.00g053210 vs. ExPASy TrEMBL
Match:
A0A6J1KQN3 (uncharacterized protein LOC111496332 OS=Cucurbita maxima OX=3661 GN=LOC111496332 PE=4 SV=1)
HSP 1 Score: 214 bits (544), Expect = 5.80e-68
Identity = 125/196 (63.78%), Postives = 130/196 (66.33%), Query Frame = 0
Query: 1 MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRRK--PSRRAAQR 60
MEAVLIPHNFS A AV +R FPL RR PS AQ
Sbjct: 1 MEAVLIPHNFS-----------PAAPAVTFYSHRRRHRRQPPRFPLPRRSFPPSEAEAQP 60
Query: 61 V-------------------------ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
ELPVEMTAEALIVDSTNR+GPEPSHVPKDLWVVL
Sbjct: 61 SCGPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRLGPEPSHVPKDLWVVL 120
Query: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAG 169
GLRLPPP P PWE SRSLGVAAEIEFSGSAF+VSPPPSSVPLPNF LMRKLNCNV+AAAG
Sbjct: 121 GLRLPPPPPRPWEDSRSLGVAAEIEFSGSAFSVSPPPSSVPLPNFSLMRKLNCNVEAAAG 180
BLAST of Csor.00g053210 vs. ExPASy TrEMBL
Match:
A0A6J1KEH8 (uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508 PE=4 SV=1)
HSP 1 Score: 143 bits (360), Expect = 6.68e-40
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 0
Query: 47 QRRKPSRRAAQRVELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWE 106
++ KP +R+ R ++ TAE +IVDSTNR+GPEPSHVPKDLW VLGLR S PP E
Sbjct: 85 KKSKPIKRS--RGPPALKSTAEFMIVDSTNRLGPEPSHVPKDLWRVLGLRS---SAPPRE 144
Query: 107 GSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLL 166
G RS E EFSGSAF VSPPPSSVPLP F L R+++CNV+AA G+DAGATDNLRRLL
Sbjct: 145 GGRSF----ETEFSGSAFGVSPPPSSVPLPKFTLRREVSCNVEAA-GVDAGATDNLRRLL 197
Query: 167 RLR 169
RLR
Sbjct: 205 RLR 197
BLAST of Csor.00g053210 vs. ExPASy TrEMBL
Match:
A0A6J1HFM4 (uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC111463019 PE=4 SV=1)
HSP 1 Score: 141 bits (356), Expect = 2.68e-39
Identity = 80/123 (65.04%), Postives = 93/123 (75.61%), Query Frame = 0
Query: 47 QRRKPSRRAAQRVELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWE 106
++ KP +R+ R ++ TAE +IVDSTNR+GPEPSHVPKDLW VLGLR S PP E
Sbjct: 85 KKSKPIKRS--RGPPALKSTAEFMIVDSTNRLGPEPSHVPKDLWRVLGLRS---SAPPRE 144
Query: 107 GSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLL 166
G R E EFSGSAF VSPPPSSVPLP F L R+++CNV+AA G+DAGATDNLRRLL
Sbjct: 145 GGRRF----ETEFSGSAFGVSPPPSSVPLPKFTLRREMSCNVEAA-GVDAGATDNLRRLL 197
Query: 167 RLR 169
RLR
Sbjct: 205 RLR 197
BLAST of Csor.00g053210 vs. ExPASy TrEMBL
Match:
A0A5A7VG22 (Sec-independent protein translocase protein TATC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001470 PE=4 SV=1)
HSP 1 Score: 134 bits (338), Expect = 1.60e-36
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 47 QRRKPSRRAAQRVELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWE 106
++ KP +R+ R + T E +I+DSTNR+GPEP HVPKDLW VLGLR PS P +
Sbjct: 85 KKSKPIKRS--RGPPAAKSTVELVIIDSTNRLGPEPCHVPKDLWRVLGLR---PSAPMCK 144
Query: 107 GSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKL-NCNVQAAAGIDAGATDNLRRL 166
+RS AAEIEFSGSA + SPPPSSVPLP F L RK+ CNV+ A G+DAGATDNLRRL
Sbjct: 145 STRSWETAAEIEFSGSACSQSPPPSSVPLPKFSLRRKVVGCNVEGA-GVDAGATDNLRRL 202
Query: 167 LRLR 169
LRLR
Sbjct: 205 LRLR 202
BLAST of Csor.00g053210 vs. TAIR 10
Match:
AT1G20070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0
Query: 126 VSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLLRLR 170
+SPPPSS+P+P F + KL CNV+AA D AT+N+RR+L+LR
Sbjct: 151 LSPPPSSLPMPRFSIKPKLRCNVEAAGKSDV-ATNNIRRVLQLR 193
BLAST of Csor.00g053210 vs. TAIR 10
Match:
AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 42.4 bits (98), Expect = 4.3e-04
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0
Query: 113 VAAEIEFSGSA-FNVSPPPSSVPLPNFPLMRKLNCNVQAAAGIDAGATDNLRRLLRLR 170
V+A+ ++GS+ F VSP PSS+PLP+F +K + ID A+ +LRRLLRL+
Sbjct: 80 VSADDIYAGSSIFAVSPAPSSLPLPSF--SKKKAKSQVVVVSIDDSASQDLRRLLRLK 135
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6585532.1 | 5.06e-116 | 100.00 | hypothetical protein SDJN03_18265, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7020445.1 | 3.22e-73 | 67.86 | hypothetical protein SDJN02_17129, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023538239.1 | 2.50e-70 | 66.67 | uncharacterized protein LOC111799074 [Cucurbita pepo subsp. pepo] | [more] |
XP_022951686.1 | 3.61e-69 | 66.33 | uncharacterized protein LOC111454434 [Cucurbita moschata] | [more] |
XP_023002514.1 | 1.20e-67 | 63.78 | uncharacterized protein LOC111496332 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1GI76 | 1.75e-69 | 66.33 | uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC1114544... | [more] |
A0A6J1KQN3 | 5.80e-68 | 63.78 | uncharacterized protein LOC111496332 OS=Cucurbita maxima OX=3661 GN=LOC111496332... | [more] |
A0A6J1KEH8 | 6.68e-40 | 65.85 | uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508... | [more] |
A0A6J1HFM4 | 2.68e-39 | 65.04 | uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC1114630... | [more] |
A0A5A7VG22 | 1.60e-36 | 62.10 | Sec-independent protein translocase protein TATC OS=Cucumis melo var. makuwa OX=... | [more] |
Match Name | E-value | Identity | Description | |
AT1G20070.1 | 2.5e-07 | 56.82 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT3G21570.1 | 4.3e-04 | 44.83 | unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bac... | [more] |