Csor.00g053120 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g053120
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 2247189 .. 2247476 (-)
RNA-Seq ExpressionCsor.00g053120
SyntenyCsor.00g053120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACAAGACGACCATATCTAACAATCGAGTTTCCAACAAACACAAACACTAGAGGTAATAACAAGAAAAAGATCTTGAAATTGACCTTTGTTCTTTTCACCTGGGATCTGTAGCTTGAATATGATGACACAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTTGTTTGA

mRNA sequence

ATGATTACAAGACGACCATATCTAACAATCGAGTTTCCAACAAACACAAACACTAGAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTTGTTTGA

Coding sequence (CDS)

ATGATTACAAGACGACCATATCTAACAATCGAGTTTCCAACAAACACAAACACTAGAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTTGTTTGA

Protein sequence

MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSVV
Homology
BLAST of Csor.00g053120 vs. NCBI nr
Match: KAG6585541.1 (hypothetical protein SDJN03_18274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (354), Expect = 4.94e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLIN 60
          MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLIN
Sbjct: 1  MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLIN 60

Query: 61 QPIVLLSVV 69
          QPIVLLSVV
Sbjct: 61 QPIVLLSVV 69

BLAST of Csor.00g053120 vs. NCBI nr
Match: KAG7020454.1 (hypothetical protein SDJN02_17138, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (351), Expect = 1.38e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLIN 60
          MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLIN
Sbjct: 1  MITRRPYLTIEFPTNTNTRDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLIN 60

Query: 61 QPIVLLSV 68
          QPIVLLSV
Sbjct: 61 QPIVLLSV 68

BLAST of Csor.00g053120 vs. NCBI nr
Match: XP_038884859.1 (uncharacterized protein LOC120075491 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 3.35e-16
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 20  DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 63
           D +M KIP  ASRGLGGG MEAKACSAHPCFH GPLLSLINQPI
Sbjct: 322 DRRMAKIPSMASRGLGGGVMEAKACSAHPCFHAGPLLSLINQPI 365

BLAST of Csor.00g053120 vs. NCBI nr
Match: PON93893.1 (hypothetical protein TorRG33x02_102830 [Trema orientale])

HSP 1 Score: 50.4 bits (119), Expect = 3.55e-06
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 20 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 63
          DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2  DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

BLAST of Csor.00g053120 vs. NCBI nr
Match: PON70726.1 (hypothetical protein PanWU01x14_077520, partial [Parasponia andersonii])

HSP 1 Score: 50.4 bits (119), Expect = 7.86e-06
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 20 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 63
          DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2  DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

BLAST of Csor.00g053120 vs. ExPASy TrEMBL
Match: A0A2P5F7W8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_102830 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.72e-06
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 20 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 63
          DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2  DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

BLAST of Csor.00g053120 vs. ExPASy TrEMBL
Match: A0A2P5DBQ6 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077520 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.80e-06
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 20 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 63
          DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2  DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6585541.14.94e-42100.00hypothetical protein SDJN03_18274, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020454.11.38e-41100.00hypothetical protein SDJN02_17138, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038884859.13.35e-1684.09uncharacterized protein LOC120075491 [Benincasa hispida][more]
PON93893.13.55e-0656.82hypothetical protein TorRG33x02_102830 [Trema orientale][more]
PON70726.17.86e-0656.82hypothetical protein PanWU01x14_077520, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
A0A2P5F7W81.72e-0656.82Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_102830 PE=4 SV... [more]
A0A2P5DBQ63.80e-0656.82Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g053120.m01Csor.00g053120.m01mRNA