Csor.00g053110 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g053110
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 2247599 .. 2248838 (-)
RNA-Seq Expression	Csor.00g053110
Synteny	Csor.00g053110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATCTGGCTAGAAAACCTATGGCTTAGGAGTGAAGGAAAAAGAAAAGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGGTAAGAATTTCTTGTCTTGTTGCTTCAGCTATTACTCCTAGGCTCTGTTGTTCTCTTTATCTAAGTTTGAAGTTCTGTGTGCATATGATCCATTTATCAACTATAGCTATCCATTTCCAATTTCATTTTTTAGGAATGAGATGCTCATATTGCTCCAGTACAATTGTAATCTATATGAAACATGGGTCCTGAAAGAGAAACCTAGAACAAAGCAGAACTAAAGTTTACTACTAGTACACACTGAGATTAAAAGAAAGTAAGAAACGTAACCGCCAAAGCCCCACTTTTCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGATTTGCATACCCTTTTAAGGACTGTTTCGTTCTCCTCTTCAATCGATGTGGGATATCACAATCCATCCTTTTGAGGGCTTAGCGTCCTATTACCCAGTATTTGATTCTGATACCATTTGTAGCGGCTCAAGCCCACTGATTGTAGTCCAAATACACTCTCATAATGAATGATTCATTCCCCTCCAAACGAATAGAGAAGAGATTGAGAGATTTTTGCCTAAATGAATATGCCTTTTTACCTCATGCCTGTGATCTCTCAATAATGTCAAATTTGTGAGCAATTAAGATAGACTGACTTAAACTGATATCACAATGAAAGAATATTGTGAATGGACAATCCATCTAGGCTGGTTAGATGTGGTTAGATGTAGTGATCGTGTATTCTTCTTCTTTCGGCTCTCCACGATGATATGATATTGTCCACTTTAAGCATAATCTTTTGTGACTTTACTTTTGGTTTACCCAAGAGACCTCGTACCAATGGAGATGTATTCTTTATTTATAAATCCATGATCAACCCCTTAATTAGCTGATATGAGACTCCTCTCCCAACAATCCTTAACGATAACATGTTACGTTTTTTGGTTATTAGGAGGATGGGAGCTTAAAACAGAAGAAAGACGTCGAAAGTGAATCAAAGACCCCTTTCAAATCTCACAAATTAAGGAGCAGCATGCATGTGTAAGTTAGTACTCTCACAACATATTTGTGGAATTATTGAGAAGGTAGCAATTAAGAGGAACATACTGCAGGGAACAACGCAAAGCCAAAGCATCACAGCCTAATAATAATACGGTCTCCATATTGATGGAAACCATTTAG

mRNA sequence

ATGCACATCTGGCTAGAAAACCTATGGCTTAGGAGTGAAGGAAAAAGAAAAGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGGAGGATGGGAGCTTAAAACAGAAGAAAGACGTCGAAAGTGAATCAAAGACCCCTTTCAAATCTCACAAATTAAGGAGCAGCATGCATGTGGAACAACGCAAAGCCAAAGCATCACAGCCTAATAATAATACGGTCTCCATATTGATGGAAACCATTTAG

Coding sequence (CDS)

ATGCACATCTGGCTAGAAAACCTATGGCTTAGGAGTGAAGGAAAAAGAAAAGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGGAGGATGGGAGCTTAAAACAGAAGAAAGACGTCGAAAGTGAATCAAAGACCCCTTTCAAATCTCACAAATTAAGGAGCAGCATGCATGTGGAACAACGCAAAGCCAAAGCATCACAGCCTAATAATAATACGGTCTCCATATTGATGGAAACCATTTAG

Protein sequence

MHIWLENLWLRSEGKRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTPFKSHKLRSSMHVEQRKAKASQPNNNTVSILMETI

Homology

[Close]

BLAST of Csor.00g053110 vs. NCBI nr
Match: KAG6585542.1 (hypothetical protein SDJN03_18275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 1.66e-49
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MHIWLENLWLRSEGKRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTPFKSHKLRSSM 60
          MHIWLENLWLRSEGKRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTPFKSHKLRSSM
Sbjct: 1  MHIWLENLWLRSEGKRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTPFKSHKLRSSM 60

Query: 61 HVEQRKAKASQPNNNTVSILMETI 84
          HVEQRKAKASQPNNNTVSILMETI
Sbjct: 61 HVEQRKAKASQPNNNTVSILMETI 84

[Close]

BLAST of Csor.00g053110 vs. ExPASy TrEMBL
Match: A0A6J1CSI8 (uncharacterized protein LOC111013900 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013900 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.02e-04
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 15  KRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTP------FKSHKLRSSMHV 62
           ++KASSAQA  GNGDS KE GS K+K+D+  ES+TP      FK  KLRSSM V
Sbjct: 308 RKKASSAQASCGNGDSRKEVGSSKRKRDIMCESRTPRLFTSSFKPPKLRSSMFV 361

[Close]

BLAST of Csor.00g053110 vs. ExPASy TrEMBL
Match: A0A6J1CSV2 (uncharacterized protein LOC111013900 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013900 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.02e-04
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 15  KRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTP------FKSHKLRSSMHV 62
           ++KASSAQA  GNGDS KE GS K+K+D+  ES+TP      FK  KLRSSM V
Sbjct: 310 RKKASSAQASCGNGDSRKEVGSSKRKRDIMCESRTPRLFTSSFKPPKLRSSMFV 363

The following BLAST results are available for this feature:

BLAST of Csor.00g053110 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g053110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585542.1	1.66e-49	100.00	hypothetical protein SDJN03_18275, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g053110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSI8	7.02e-04	59.26	uncharacterized protein LOC111013900 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CSV2	7.02e-04	59.26	uncharacterized protein LOC111013900 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Csor.00g053110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g053110.m01	Csor.00g053110.m01	mRNA