Csor.00g052540 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g052540
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionChloroplast thylakoid membrane
LocationCsor_Chr12: 2598889 .. 2600536 (-)
RNA-Seq ExpressionCsor.00g052540
SyntenyCsor.00g052540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCGTTAGGGGAATTTGAAGCGTCATCGAAAAGGAATGGTGGATTCGCGCCACGTGGGAACTGGCTAAGAGAGAGAAAGAAGAGAGAGATTGTGGATGACGATTGCTGTTTGATGGGACGGCGGCGATCGGCTCCGCCGATGAAGAAGGTGGACAATAGAAGGCGGAGATTCAACTGGAAAACTGTCCCAATGCGTAAAACTGGCGGGTAAACATTATCGATATTTGACTGTTAAATTAATTGATGTTTCCATTTTTTAAAAATTAATTTCTTTTTAAAGTCAATTTAAATAATAACAATTCGAATTAAAAAAATCAATTTTTACCTTTAAATTCGAAAATTTTATTAATTTTTAACCTACACTTTTAATTTTTTTTTATTAAATTGCACTTTAAATTTTAATAAATATAAAAAAACTACCTTCACTATTGTCTAAAAATTATTTTAGAATATATATATATATATAATAGATTATTACTACATCAATACAATTTTATACAAAATAAAATAAAATAAAATAAAATCAGTTAGGATAATTTTGAAAAATTTGTTGTTTTTTTTATTTATTTATTAATATTTGATTTTAAAAAAATTGAACTAATGATGAAAAAAATATTTATTTAATTATAAAGTTAAAATGGATGAAATTAACATAATTTAATAATAATTAACACGTCTAAAAAATTATAGGCTCGAGTTTCACGGTTCCAAATGTTGTTGAACTCAAAATAATAATAATAATTAAGTGAATAAATAACTACTACCTATACGTGTAAATATAAATGATATTTAAAAATAAATTATTTTTATATCAAATTCCATAAACTTTACGGCAAACTAAAAAAATTATAATATCTTATCTATTATTATCGGTCAATTTCTTGTATAAAACGACACTTTAAAAAGAATAAAAACTCTCAATTTTTTAAAGGAATATTTATAAATATGCTCGAGAATAATATATTTCTATATTTAATTTTACTTTTGATAACAATAATTTTATTCTAATGGGTTATTCTTTTTTAATATTGAAATTTTATTAAATAAAAAAAGGCTCCGTAGTAATAAAATAAATTTAAAATTATTTGATTGTTGATTATTATATTTCAAGATTAAAAATGATAAAAAAAAAACATATTATTTAATTATTCATTTTAATTAGTTTAGAATATCTTAATAATTAAACACTTATCTAATTTTATCGTCTAATTTGTCATTTATTTATTATTTAAACGATTATTTTTATGAAATAATTATAAGTAAAAAAAAAAAAATCTGGGCCAAGCATAAAAGTATCCCTGTTCTTCAGCTACGACAACGATCGGACTCCGCATTATCTCGGTTCCAACCGCCGTCTCACGATCAGAACAATGATCCATTCCAAGAAAGGCAATTGCAGCGCCGTCAGTTTCCGATCACAACATCTCGTAGAGGCCTCACGATGATCTCATTTCTCGCTGCGATGCCGTCTCTGTTTCTACCTGCTCCTGCCGCTGCTTTGAATCTCGGCATTTGTAAGCACGCTACGCAACATTGTGTCGTTGATTGGTTTACTTGTCCTTTTGTTCTTTATTTTCTTGTTGAAACCCTAGTTTATCGGTTTGTTTGCAGCAGGAACGAAGGATTGCTTGAAGGAGCAATAG

mRNA sequence

ATGGTTCCGTTAGGGGAATTTGAAGCGTCATCGAAAAGGAATGGTGGATTCGCGCCACGTGGGAACTGGCTAAGAGAGAGAAAGAAGAGAGAGATTGTGGATGACGATTGCTGTTTGATGGGACGGCGGCGATCGGCTCCGCCGATGAAGAAGCTACGACAACGATCGGACTCCGCATTATCTCGGTTCCAACCGCCGTCTCACGATCAGAACAATGATCCATTCCAAGAAAGGCAATTGCAGCGCCGTCAGTTTCCGATCACAACATCTCGTAGAGGCCTCACGATGATCTCATTTCTCGCTGCGATGCCGTCTCTGTTTCTACCTGCTCCTGCCGCTGCTTTGAATCTCGGCATTTCAGGAACGAAGGATTGCTTGAAGGAGCAATAG

Coding sequence (CDS)

ATGGTTCCGTTAGGGGAATTTGAAGCGTCATCGAAAAGGAATGGTGGATTCGCGCCACGTGGGAACTGGCTAAGAGAGAGAAAGAAGAGAGAGATTGTGGATGACGATTGCTGTTTGATGGGACGGCGGCGATCGGCTCCGCCGATGAAGAAGCTACGACAACGATCGGACTCCGCATTATCTCGGTTCCAACCGCCGTCTCACGATCAGAACAATGATCCATTCCAAGAAAGGCAATTGCAGCGCCGTCAGTTTCCGATCACAACATCTCGTAGAGGCCTCACGATGATCTCATTTCTCGCTGCGATGCCGTCTCTGTTTCTACCTGCTCCTGCCGCTGCTTTGAATCTCGGCATTTCAGGAACGAAGGATTGCTTGAAGGAGCAATAG

Protein sequence

MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGISGTKDCLKEQ
Homology
BLAST of Csor.00g052540 vs. NCBI nr
Match: KAG6585599.1 (hypothetical protein SDJN03_18332, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (667), Expect = 6.79e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSAL 60
           MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSAL
Sbjct: 1   MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSAL 60

Query: 61  SRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGIS 120
           SRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGIS
Sbjct: 61  SRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGIS 120

Query: 121 GTKDCLKEQ 129
           GTKDCLKEQ
Sbjct: 121 GTKDCLKEQ 129

BLAST of Csor.00g052540 vs. NCBI nr
Match: KAG7020512.1 (hypothetical protein SDJN02_17197, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239 bits (610), Expect = 7.45e-78
Identity = 119/124 (95.97%), Postives = 120/124 (96.77%), Query Frame = 0

Query: 1   MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSAL 60
           MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSAL
Sbjct: 1   MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSAL 60

Query: 61  SRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGIS 120
           SRFQPPSHDQNNDPFQE QLQRRQFPITTSRRGLTMISFLAA+PSLFLPAPAAALNLGIS
Sbjct: 61  SRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGIS 120

Query: 121 GTKD 124
              D
Sbjct: 121 NAFD 124

BLAST of Csor.00g052540 vs. NCBI nr
Match: XP_038884858.1 (uncharacterized protein LOC120075490 isoform X3 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 8.88e-22
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 58  SALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNL 117
           +A+S   P S + NNDPFQE Q  R Q PITTSRRGLTM+SF++A+PSLFLPAPA A N+
Sbjct: 13  AAVSPPSPLSQNPNNDPFQESQPPRHQLPITTSRRGLTMLSFISAVPSLFLPAPATAFNI 72

Query: 118 GISGTKDCLKEQ 129
           GISG KD LKEQ
Sbjct: 73  GISGPKDWLKEQ 84

BLAST of Csor.00g052540 vs. NCBI nr
Match: XP_038884856.1 (uncharacterized protein LOC120075490 isoform X2 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 2.17e-21
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 58  SALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNL 117
           +A+S   P S + NNDPFQE Q  R Q PITTSRRGLTM+SF++A+PSLFLPAPA A N+
Sbjct: 13  AAVSPPSPLSQNPNNDPFQESQPPRHQLPITTSRRGLTMLSFISAVPSLFLPAPATAFNI 72

Query: 118 GISGTKDCLKEQ 129
           GISG KD LKEQ
Sbjct: 73  GISGPKDWLKEQ 84

BLAST of Csor.00g052540 vs. NCBI nr
Match: XP_038884855.1 (uncharacterized protein LOC120075490 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 2.36e-21
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 58  SALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNL 117
           +A+S   P S + NNDPFQE Q  R Q PITTSRRGLTM+SF++A+PSLFLPAPA A N+
Sbjct: 13  AAVSPPSPLSQNPNNDPFQESQPPRHQLPITTSRRGLTMLSFISAVPSLFLPAPATAFNI 72

Query: 118 GISGTKDCLKEQ 129
           GISG KD LKEQ
Sbjct: 73  GISGPKDWLKEQ 84

BLAST of Csor.00g052540 vs. ExPASy TrEMBL
Match: A0A5A7VAP0 (Chloroplast thylakoid membrane OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005740 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.17e-20
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 65  PPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGISGTKD 124
           PPS   N+D FQE Q  R Q PITTSRRGLTM+SF++AMPSLFLPAPA+A ++GISG KD
Sbjct: 17  PPSQSPNSDQFQESQTLRHQLPITTSRRGLTMLSFISAMPSLFLPAPASAFDIGISGPKD 76

Query: 125 CLKEQ 129
            LKEQ
Sbjct: 77  WLKEQ 81

BLAST of Csor.00g052540 vs. ExPASy TrEMBL
Match: A0A1S3BAY8 (uncharacterized protein LOC103487971 OS=Cucumis melo OX=3656 GN=LOC103487971 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.17e-20
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 65  PPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNLGISGTKD 124
           PPS   N+D FQE Q  R Q PITTSRRGLTM+SF++AMPSLFLPAPA+A ++GISG KD
Sbjct: 17  PPSQSPNSDQFQESQTLRHQLPITTSRRGLTMLSFISAMPSLFLPAPASAFDIGISGPKD 76

Query: 125 CLKEQ 129
            LKEQ
Sbjct: 77  WLKEQ 81

BLAST of Csor.00g052540 vs. ExPASy TrEMBL
Match: A0A0A0LPA8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361670 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.32e-20
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0

Query: 58  SALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNL 117
           S  +   PPS   NND FQE Q  R Q PITTSRRGLTM+SF++A+PSLFLPAPA+A ++
Sbjct: 10  SVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFLPAPASAFDI 69

Query: 118 GISGTKDCLKEQ 129
           GISG KD LKEQ
Sbjct: 70  GISGPKDWLKEQ 81

BLAST of Csor.00g052540 vs. ExPASy TrEMBL
Match: A0A6J1CT65 (uncharacterized protein LOC111013988 OS=Momordica charantia OX=3673 GN=LOC111013988 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.48e-15
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 58  SALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNL 117
           +A+S   P S  QNND F+E QLQ  + PI  +RRG TM+SFL+AMPSLFLPAPA A ++
Sbjct: 17  TAVSPLNPVS--QNNDEFRESQLQWHRLPI--NRRGFTMLSFLSAMPSLFLPAPATAFDI 76

Query: 118 GISGTKDCLKEQ 129
           GISG KD LKEQ
Sbjct: 77  GISGPKDWLKEQ 84

BLAST of Csor.00g052540 vs. ExPASy TrEMBL
Match: A0A6J1HBA0 (uncharacterized protein LOC111462505 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462505 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.65e-15
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 58  SALSRFQPPSHDQNNDPFQERQLQRRQFPITTSRRGLTMISFLAAMPSLFLPAPAAALNL 117
           SA+S     SH+  +D   + Q  R   P+TTSRRGLTM+SFL+AMPSLFLPAPA A ++
Sbjct: 13  SAVSPLSLLSHEPRDD---QSQALRHNLPVTTSRRGLTMLSFLSAMPSLFLPAPATAFDI 72

Query: 118 GISGTKDCLKEQ 129
           GISG KD L+EQ
Sbjct: 73  GISGPKDWLREQ 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6585599.16.79e-88100.00hypothetical protein SDJN03_18332, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020512.17.45e-7895.97hypothetical protein SDJN02_17197, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038884858.18.88e-2268.06uncharacterized protein LOC120075490 isoform X3 [Benincasa hispida][more]
XP_038884856.12.17e-2168.06uncharacterized protein LOC120075490 isoform X2 [Benincasa hispida][more]
XP_038884855.12.36e-2168.06uncharacterized protein LOC120075490 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A5A7VAP01.17e-2070.77Chloroplast thylakoid membrane OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3BAY81.17e-2070.77uncharacterized protein LOC103487971 OS=Cucumis melo OX=3656 GN=LOC103487971 PE=... [more]
A0A0A0LPA82.32e-2065.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361670 PE=4 SV=1[more]
A0A6J1CT652.48e-1562.50uncharacterized protein LOC111013988 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1HBA05.65e-1558.33uncharacterized protein LOC111462505 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g052540.m01Csor.00g052540.m01mRNA