Csor.00g052520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g052520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein RADIALIS-like 4
Location	Csor_Chr12: 2610796 .. 2612259 (+)
RNA-Seq Expression	Csor.00g052520
Synteny	Csor.00g052520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGGTTAATCTCTTTCTCTATTCGATGTATTTCGAAATTAATTTTTATCGTTTGAGCGTTTGATTTTGGTCGGAATAATTAAAGGGTTCGAGAACGATCAACACTCTGATAAAAAAGACTTGTTTTCGGTTAAATAGCTCGAACTATTTCTGTTATAAACCATTTGTGATCACGGCGTGTAGAGGGATTGGATTGAAAAAATCATTTGGACTCACTTGAAATTTCAAGTTAGTATGGTTTGAGCGTTTGATTTTCGTCAGAGTAATTAATGGGCTCGAGAACGATGAACACTCTCATAAGAAAAAGACTCGTTTTCGGTTAAATATTAAGCTCGGACCGTTTCAGTCATAAACTATTTATGATCAGGGAGTGTTCATGGGTTGGGTTGAAAAAATCTTTTGGACCCACATAAAATTTCAGGTTAGTATGGTTTGAGCGTTTGGATTTTGGTCGGAAAAATTGATGGGTTCGAGAAGGATGAACACTCGTGATAAGAAAAAACTCGTTTTTGGTTAAATAATAAGCTCGGGCCGTTTCAGTCATAAACCATTTGTGATCACGGGTGTACATGGGTTGGGTTGAAAAAATCTTTTAGACCCACTTGAAGTTTCAGGTTAGTATGGTTTGAGCGTTTTATTTTGGTCGGAAAAATTAATGGGTTCGAGAAGGATGAACACTCTGATGAGAAAATACTCGATTTCGATTAAATAATAAACTCAGTCCGTTTCAGTCATAAACCATTTGTGATCACGGGGTATACTTGGGTTGGGTTGAAAAAATCTTTTAGACCCACTTGAAATTTCAGGTTAGTATGGTTTGAGCGTTTGATTTTAGTCGAAAAAATTAATAGGTTCGAGAAGGATGAACACTCGTGATAAGAAAAAACTTGTTTTTGGTTAAATAATAAACTCGGTCCGTTTCAATCATAAACCATTTTTTATTATTGGAGCGTATACAAGTTGGTTGGGTCAGTGACCTGAGTAATCGAAATAGAGGATACCGTCTAACCCATTTTAACCCTGGATTTTCAAATTGGAATGTGTCGGGGTGTTCTTTTTTTAAAAAATACCATAATTATTCACATGTTATATTGATAATTAAAATATTATAAAGTTCAAATACAAAATATTTACCGGTGGGTTGAATTGTAACTTTATTTTTCGATTTTTGCAGGTTGAAGAGTCTAAAGCTATAA

mRNA sequence

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGGTTGAAGAGTCTAAAGCTATAA

Coding sequence (CDS)

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGGTTGAAGAGTCTAAAGCTATAA

Protein sequence

MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL

Homology

[Close]

BLAST of Csor.00g052520 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQ 61

Query: 64 DVHNIEIGRIPLPNYSNS----SNQYYSNEQRLKSLKL 98
          D+++IE G +P PNY  S    + +    E+R+++++L
Sbjct: 62 DINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of Csor.00g052520 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-21
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY----SNSSNQYYSNEQRLKSLKL 98
           NIE GR+PLPNY    SNS +    + +++K+LK+
Sbjct: 62 INIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Csor.00g052520 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-20
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSS SSS+SW+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE   +PLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of Csor.00g052520 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-20
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SSS SW+ K+NK+FE AL  YD+D+PDRW  VA AVGGK+AEEV+RHYE+L+ DV
Sbjct: 2  ASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDV 61

Query: 66 HNIEIGRIPLPNYSNSSNQY 86
          ++IE GR P PNY ++ N +
Sbjct: 62 NDIESGRYPHPNYRSNGNNH 81

[Close]

BLAST of Csor.00g052520 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-20
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 7  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVH 66
          +S+  S   WS K+NK FE AL +YDKD+PDRW  VA AV G+T EEVK+HYE+LVED+ 
Sbjct: 2  ASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61

Query: 67 NIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL 98
           IE G++P PNY  +     ++E+R ++LK+
Sbjct: 62 YIESGKVPFPNYRTTGGNMKTDEKRFRNLKI 92

[Close]

BLAST of Csor.00g052520 vs. NCBI nr
Match: KAG6585601.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (462), Expect = 1.21e-57
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60
          MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM
Sbjct: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL 97
          LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL
Sbjct: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL 97

[Close]

BLAST of Csor.00g052520 vs. NCBI nr
Match: XP_023537868.1 (protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172 bits (435), Expect = 1.45e-53
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          SSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVE
Sbjct: 1  SSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 60

Query: 64 DVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL 97
          DVHNIEIGRIPLPNYSNSSNQ YSNEQRLK LKL
Sbjct: 61 DVHNIEIGRIPLPNYSNSSNQCYSNEQRLKGLKL 94

[Close]

BLAST of Csor.00g052520 vs. NCBI nr
Match: KAG7020514.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (432), Expect = 3.90e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60
          MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM
Sbjct: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ 90
          LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
Sbjct: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ 90

[Close]

BLAST of Csor.00g052520 vs. NCBI nr
Match: XP_022951876.1 (protein RADIALIS-like 4, partial [Cucurbita moschata])

HSP 1 Score: 168 bits (426), Expect = 4.80e-52
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLV 62
          SSSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLV
Sbjct: 1  SSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60

Query: 63 EDVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL 97
          EDVHNIEIGRIPLPNYSNSS+QYYSNEQRL S  +
Sbjct: 61 EDVHNIEIGRIPLPNYSNSSDQYYSNEQRLISFSI 95

[Close]

BLAST of Csor.00g052520 vs. NCBI nr
Match: XP_023002559.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 162 bits (409), Expect = 1.56e-49
Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          SSSSSSSSSSN WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVE
Sbjct: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61

Query: 64 DVHNIEIGRIPLPNYSNSSNQYYSN----EQRLKSLKL 97
          DVHNIEIGRIPLPNYSNSS QYYSN    EQRLK LKL
Sbjct: 62 DVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQRLKGLKL 99

[Close]

BLAST of Csor.00g052520 vs. ExPASy TrEMBL
Match: A0A6J1GIQ1 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454612 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 2.32e-52
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLV 62
          SSSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLV
Sbjct: 1  SSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60

Query: 63 EDVHNIEIGRIPLPNYSNSSNQYYSNEQRLKSLKL 97
          EDVHNIEIGRIPLPNYSNSS+QYYSNEQRL S  +
Sbjct: 61 EDVHNIEIGRIPLPNYSNSSDQYYSNEQRLISFSI 95

[Close]

BLAST of Csor.00g052520 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 7.55e-50
Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          SSSSSSSSSSN WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVE
Sbjct: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61

Query: 64 DVHNIEIGRIPLPNYSNSSNQYYSN----EQRLKSLKL 97
          DVHNIEIGRIPLPNYSNSS QYYSN    EQRLK LKL
Sbjct: 62 DVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQRLKGLKL 99

[Close]

BLAST of Csor.00g052520 vs. ExPASy TrEMBL
Match: A0A6J1K580 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 6.60e-42
Identity = 76/97 (78.35%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          SSSSSSSS+ WS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDV
Sbjct: 3  SSSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDV 62

Query: 66 HNIEIGRIPLPNYSN-----SSNQYYSNEQRLKSLKL 97
          HNIE GR+PLPNYS      SSN +   EQRLK LKL
Sbjct: 63 HNIETGRVPLPNYSKPSKHCSSNTFLDEEQRLKGLKL 99

[Close]

BLAST of Csor.00g052520 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.33e-41
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60
          M+SS++SSSSSSS+SWS KQNK+FENALT+YDKDSPDRWQK+A AVGGKTA+EVKRHYEM
Sbjct: 1  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSN--SSNQYYSNEQRLKSLKL 97
          LVEDVHNIE G++PLPNYS   S N +   EQRLK LKL
Sbjct: 61 LVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL 99

[Close]

BLAST of Csor.00g052520 vs. ExPASy TrEMBL
Match: A0A6J1HEM1 (protein RADIALIS-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111462781 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.17e-38
Identity = 67/78 (85.90%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 7  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVH 66
          SSSSSSS+SWS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDVH
Sbjct: 3  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVH 62

Query: 67 NIEIGRIPLPNYSNSSNQ 84
          NIE GR+PLPNYS  S Q
Sbjct: 63 NIETGRVPLPNYSTPSKQ 80

[Close]

BLAST of Csor.00g052520 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 103.6 bits (257), Expect = 9.1e-23
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQ 61

Query: 64 DVHNIEIGRIPLPNYSNS----SNQYYSNEQRLKSLKL 98
          D+++IE G +P PNY  S    + +    E+R+++++L
Sbjct: 62 DINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of Csor.00g052520 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-22
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY----SNSSNQYYSNEQRLKSLKL 98
           NIE GR+PLPNY    SNS +    + +++K+LK+
Sbjct: 62 INIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Csor.00g052520 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 100.5 bits (249), Expect = 7.7e-22
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE GR+PLPNY
Sbjct: 62 INIETGRVPLPNY 74

[Close]

BLAST of Csor.00g052520 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 100.5 bits (249), Expect = 7.7e-22
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSS SSS+SW+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE   +PLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of Csor.00g052520 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-20
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVH 66
          +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 67 NIEIGRIPLPNYSNSS 83
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:

BLAST of Csor.00g052520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	1.3e-21	54.08	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	1.7e-21	57.29	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	1.1e-20	68.49	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q6NNN0	1.9e-20	60.00	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	2.4e-20	51.65	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Csor.00g052520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585601.1	1.21e-57	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023537868.1	1.45e-53	95.74	protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo]	[more]
KAG7020514.1	3.90e-53	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951876.1	4.80e-52	92.63	protein RADIALIS-like 4, partial [Cucurbita moschata]	[more]
XP_023002559.1	1.56e-49	89.80	protein RADIALIS-like 4 [Cucurbita maxima]	[more]

BLAST of Csor.00g052520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GIQ1	2.32e-52	92.63	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454612 PE=4 SV=1	[more]
A0A6J1KQS6	7.55e-50	89.80	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]
A0A6J1K580	6.60e-42	78.35	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1	[more]
A0A1S3BBR2	1.33e-41	76.77	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
A0A6J1HEM1	1.17e-38	85.90	protein RADIALIS-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111462781 PE=4 SV=1	[more]

BLAST of Csor.00g052520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	9.1e-23	54.08	RAD-like 1	[more]
AT1G75250.2	1.2e-22	57.29	RAD-like 6	[more]
AT1G75250.1	7.7e-22	67.12	RAD-like 6	[more]
AT1G19510.1	7.7e-22	68.49	RAD-like 5	[more]
AT2G18328.1	2.5e-20	59.21	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.0E-6 score: 37.4
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.260491
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 24..62 e-value: 5.94887E-4 score: 32.9326
None	No IPR available	GENE3D	1.10.10.60		coord: 6..75 e-value: 7.4E-23 score: 82.1
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 11..96
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..61 e-value: 1.3E-5 score: 25.3
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 11..96
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g052520.m01	Csor.00g052520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity