Csor.00g052250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g052250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	mediator of RNA polymerase II transcription subunit 18
Location	Csor_Chr12: 2739902 .. 2741642 (-)
RNA-Seq Expression	Csor.00g052250
Synteny	Csor.00g052250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGTGTGGTTCAGGGCATAATCGAGACGCAGGCAAGTTTTTCTTCCTTTTGGTCTCGAATCGTTCTTCACTTCCTTCACGATCTAGTTCCGTTTTGCGTATCTAATTAATTCTCTTATAGTTCTTCATTTTCATGTCTGTTTATCCACTCTAGAAATGTATTCGATCCTCTTTTTCGTCGTATCCATAAGCTTTTGAATATCGATTATGACTGTGGGGTTGTGATCATCGCTGGTGTTTTTCTCTGAATTATGATTTAAAGCTTTCCTGGCGTGCGGCTGTTTCTTCGATTACTATAATCTGTTGTTTTCCACCAATTTTAATTGAGCTTACTTTTTCTCTAGGTTATTCCTTTCTTGATAGTAGCGACAAGTTTTTGTGCTTGGACTTCTCCTGACATTTTGATTCTGCAGCACGTTGAGGCGCTTGAGATTCTTCTTCAAGGAATTTGCGGCGTTCCCAGAGAACGATTAAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAACTTAGGTATCCATGTGTGTTTCTTCAGCCTATTATTACATATTTGACTTCTCAGCATGTGATGGTATTTTGATAGTTCTTCTGATTTCAAAACCGTGATTGATACGAGTGGCATTTCTCCAAGTAAATTGGAGATTGGAGATTGTGCTTCCCCTTTATATCACTGTCTAATTTCATAATCTTTTGGCATAATGTTAGGTGCTGTGGCTTCAGAGGTTCGAATCATGTGTGACCTCGAGCAGACGGAACCGTCGTGGTATAATTCGATATCTTGCTTTAATACGGTGTTGTTTACTTTGGAGATAATTGAATGAATGGCAACTTTGTCCATGATAAATTAGGACTGTTAAACATATTGGAGGGGCAATGAGAGGTTCAGGTGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGTAAGAACGTGCTTCGTTTATTCTATGCGCTTGGCTATAAGTTAGACCATGAGCTGCTGAGAGTTGGGTTTTCTTTCCGATTCCACCGGGGCACTCATATAACAGTGACGGTTTCTTCAGTTAATAAGATGTTGAAGCTTCATTCGACCGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCCCCAGCAACTTCTGAAAACTACTCCGAAGTAGCCGGTGCAGTGTCAACGTTCTGTGAATATCTTGCACCGTAAGTACTTCTAGTACTTTTAGGATTGAAGTTGTCGTGTAAATGAACTGTTCGGTTTATGCATATTCAATAGCCTATCTCACACTGATGCTTGAATTGCTGATATGGGCTCGAGACCTTACTAAATTCGAATGCCTGCCACAAAAACACGAAAGAATTTCACAATTATCGATCATAATCTACCTGTTGGTCGAATTGTTCTGCATTGACAAGGGCCCCTTTTTTACTGGATGCTTGATCATGTTCATTCACTTGTTTCTCCTCCAAAGAAACTTATAACTATAGGTTTGGGGTTAGAAAAATCATAATGCACAATATTTCTGTTTGCTCAAAGTAAAGATTAATTACCAAGTTTGTGTGTCGCTTATAAGCTATTGCTTGTACTTTCTTGACTGTGATAAAATCAAGCTTTCATCTTTACTTTTACAGGCTGCTGCATTTGTCAAAACCTGGAATATCCACAGGTGTTGTTCCTACAGCTGCTGCCGCTGCAGCATCTCTCCTCTCCGATGGCGCGGGAACGACAATGTAG

mRNA sequence

ATGGAGTGTGTGGTTCAGGGCATAATCGAGACGCAGCACGTTGAGGCGCTTGAGATTCTTCTTCAAGGAATTTGCGGCGTTCCCAGAGAACGATTAAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAACTTAGGTGCTGTGGCTTCAGAGGTTCGAATCATGTGTGACCTCGAGCAGACGGAACCGTCGTGGACAATGGTAGAAAGCAAAGTTAGTAAGAACGTGCTTCGTTTATTCTATGCGCTTGGCTATAAGTTAGACCATGAGCTGCTGAGAGTTGGGTTTTCTTTCCGATTCCACCGGGGCACTCATATAACAGTGACGGTTTCTTCAGTTAATAAGATGTTGAAGCTTCATTCGACCGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCCCCAGCAACTTCTGAAAACTACTCCGAAGTAGCCGGTGCAGTGTCAACGTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCTGGAATATCCACAGGTGTTGTTCCTACAGCTGCTGCCGCTGCAGCATCTCTCCTCTCCGATGGCGCGGGAACGACAATGTAG

Coding sequence (CDS)

ATGGAGTGTGTGGTTCAGGGCATAATCGAGACGCAGCACGTTGAGGCGCTTGAGATTCTTCTTCAAGGAATTTGCGGCGTTCCCAGAGAACGATTAAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAACTTAGGTGCTGTGGCTTCAGAGGTTCGAATCATGTGTGACCTCGAGCAGACGGAACCGTCGTGGACAATGGTAGAAAGCAAAGTTAGTAAGAACGTGCTTCGTTTATTCTATGCGCTTGGCTATAAGTTAGACCATGAGCTGCTGAGAGTTGGGTTTTCTTTCCGATTCCACCGGGGCACTCATATAACAGTGACGGTTTCTTCAGTTAATAAGATGTTGAAGCTTCATTCGACCGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCCCCAGCAACTTCTGAAAACTACTCCGAAGTAGCCGGTGCAGTGTCAACGTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCTGGAATATCCACAGGTGTTGTTCCTACAGCTGCTGCCGCTGCAGCATCTCTCCTCTCCGATGGCGCGGGAACGACAATGTAG

Protein sequence

MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQTEPSWTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM

Homology

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BLAST of Csor.00g052250 vs. ExPASy Swiss-Prot
Match: Q9SJZ6 (Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana OX=3702 GN=MED18 PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.1e-83
Identity = 157/217 (72.35%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CL+SGPNLG V+SEVR++CDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      M+ESKVSKN LR+FYALGYKLDHELL+VGF+F
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
            F R  HI+V+VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATSENYSEVA AVS+FCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 196
           +LAPL+HLSKP ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

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BLAST of Csor.00g052250 vs. NCBI nr
Match: KAG6585628.1 (Mediator of RNA polymerase II transcription subunit 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377 bits (969), Expect = 8.75e-132
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  TEPSWTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVTVSSVNKMLKLH 120
           TEPSWTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVTVSSVNKMLKLH
Sbjct: 61  TEPSWTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVTVSSVNKMLKLH 120

Query: 121 STDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAA 180
           STDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAA
Sbjct: 121 STDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAA 180

Query: 181 AAAASLLSDGAGTTM 195
           AAAASLLSDGAGTTM
Sbjct: 181 AAAASLLSDGAGTTM 195

[Close]

BLAST of Csor.00g052250 vs. NCBI nr
Match: XP_022951149.1 (mediator of RNA polymerase II transcription subunit 18 [Cucurbita moschata] >XP_023536835.1 mediator of RNA polymerase II transcription subunit 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (936), Expect = 2.05e-126
Identity = 195/217 (89.86%), Postives = 195/217 (89.86%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
           TEPSWT                      MVESKVSKNVLRLFYALGYKLDHELLRVGFSF
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. NCBI nr
Match: XP_023002016.1 (mediator of RNA polymerase II transcription subunit 18 [Cucurbita maxima])

HSP 1 Score: 362 bits (930), Expect = 1.69e-125
Identity = 194/217 (89.40%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
           TEPSWT                      MVESKVSKNVLRLFYALGYKLDHELLRVGFSF
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVA AVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVASAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. NCBI nr
Match: XP_022144379.1 (mediator of RNA polymerase II transcription subunit 18 [Momordica charantia])

HSP 1 Score: 357 bits (917), Expect = 1.61e-123
Identity = 190/217 (87.56%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      MVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  AEPAWTVKHIGGAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. NCBI nr
Match: XP_011649597.2 (mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativus] >KAE8652099.1 hypothetical protein Csa_022370 [Cucumis sativus])

HSP 1 Score: 354 bits (909), Expect = 2.67e-122
Identity = 188/217 (86.64%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      MVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. ExPASy TrEMBL
Match: A0A6J1GHW3 (mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita moschata OX=3662 GN=LOC111454081 PE=3 SV=1)

HSP 1 Score: 365 bits (936), Expect = 9.93e-127
Identity = 195/217 (89.86%), Postives = 195/217 (89.86%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
           TEPSWT                      MVESKVSKNVLRLFYALGYKLDHELLRVGFSF
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. ExPASy TrEMBL
Match: A0A6J1KK74 (mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita maxima OX=3661 GN=LOC111496026 PE=3 SV=1)

HSP 1 Score: 362 bits (930), Expect = 8.16e-126
Identity = 194/217 (89.40%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
           TEPSWT                      MVESKVSKNVLRLFYALGYKLDHELLRVGFSF
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVA AVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVASAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. ExPASy TrEMBL
Match: A0A6J1CS50 (mediator of RNA polymerase II transcription subunit 18 OS=Momordica charantia OX=3673 GN=LOC111014072 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 7.81e-124
Identity = 190/217 (87.56%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      MVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  AEPAWTVKHIGGAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. ExPASy TrEMBL
Match: A0A1S3BBM1 (mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo OX=3656 GN=LOC103487937 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.06e-121
Identity = 187/217 (86.18%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      MVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RF+RG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFYRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Csor.00g052250 vs. ExPASy TrEMBL
Match: A0A0A0LNJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360810 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 9.04e-121
Identity = 188/218 (86.24%), Postives = 193/218 (88.53%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      MVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLS-DGAGTTM 195
           YLAPLLHLSKPGISTGVVPTAAAAAASLLS DGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSADGAGTTM 218

[Close]

BLAST of Csor.00g052250 vs. TAIR 10
Match: AT2G22370.1 (unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-84
Identity = 157/217 (72.35%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CL+SGPNLG V+SEVR++CDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  TEPSWT----------------------MVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120
            EP+WT                      M+ESKVSKN LR+FYALGYKLDHELL+VGF+F
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180
            F R  HI+V+VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATSENYSEVA AVS+FCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 196
           +LAPL+HLSKP ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

The following BLAST results are available for this feature:

BLAST of Csor.00g052250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJZ6	3.1e-83	72.35	Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana O...	[more]

BLAST of Csor.00g052250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585628.1	8.75e-132	100.00	Mediator of RNA polymerase II transcription subunit 18, partial [Cucurbita argyr...	[more]
XP_022951149.1	2.05e-126	89.86	mediator of RNA polymerase II transcription subunit 18 [Cucurbita moschata] >XP_...	[more]
XP_023002016.1	1.69e-125	89.40	mediator of RNA polymerase II transcription subunit 18 [Cucurbita maxima]	[more]
XP_022144379.1	1.61e-123	87.56	mediator of RNA polymerase II transcription subunit 18 [Momordica charantia]	[more]
XP_011649597.2	2.67e-122	86.64	mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativ...	[more]

BLAST of Csor.00g052250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHW3	9.93e-127	89.86	mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita moschata OX=...	[more]
A0A6J1KK74	8.16e-126	89.40	mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita maxima OX=36...	[more]
A0A6J1CS50	7.81e-124	87.56	mediator of RNA polymerase II transcription subunit 18 OS=Momordica charantia OX...	[more]
A0A1S3BBM1	1.06e-121	86.18	mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LNJ4	9.04e-121	86.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360810 PE=3 SV=1	[more]

BLAST of Csor.00g052250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22370.1	2.2e-84	72.35	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.320.10		coord: 64..168 e-value: 3.0E-7 score: 32.4
IPR019095	Mediator complex, subunit Med18	PANTHER	PTHR13321	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18	coord: 66..179 coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g052250.m01	Csor.00g052250.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity