Csor.00g051760 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g051760
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 3074822 .. 3077032 (+)
RNA-Seq ExpressionCsor.00g051760
SyntenyCsor.00g051760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTAGGCGTGTGGCAAGAGCAGGTCAGTGATGTGCTGATACAACCTGGGTTACACAAGGCTTTGAAGGGAAGACTGAGTGGTGATACTTCTGAAAAGCTAAGCATTGATTCTAGTCCACTGGCAGGTTTAGCAAAGGTTCAAAAACGTCTGGCATGAGTGATGAAGAATAGGAAGACTTACATTAAAGAGTTGCAAGGGCAATCAAACTAAATTGGCTAAGAATATTTCTTTCAAATATGCATGACATTTTAATAGCCAAAGAGCTTTGAGAGAAGCTTGAAGCAATGTATTAGGCAAAGAGCATCTCAAATCAACTATACTTAGAAGGAGCAGTTTCACACGGTGTGGATCGAGAAGGGTACGAAAATCTCATATCATCTGAGTGTGCTCAATGGCATTGCCTCCGAGATGGAGGAGATTGAAGTGAAGATAGAGGATGAACATAAAGCATTCAAACTTATCTAACCACTTTCGCCTTCGAAAGAAGCTTTAAATTTTGTTGAGACTACAAGTAAACTTCTATTAGTGGAAAGAAGGTTGAAGAGTGAAGGCTGCACTTCACACAAGGATTCAACTACTAGTTGTAACGCCCTAGATCCACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGACTTCCCCTCAAGGCTTTAAAACACGTCTGCTAGGGAAAAGTTTCTACACCCTTATAAATGGCGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACACTAGTAGCTAGCAACAGGAAGAAGACAGACTTTGGGCAAAAGAAAGGCGGCTGGGAATATAGACCATCCAAACACATAAAAAAGAGATATCCTAACCTAGTAGATTCATCAAAGGGCTCTAGGTTGGACGGTAACGTTGTCTCTCTCGTCAGAACAGAAGATGACTGTCTCTAGAGACATAATTCATCCTCACGGTATGTCCACGTTACCATGATAAAGGAGGTGTTATTAGCGATTCCGCCACTTAGCACATGCTCATTGGCTTAGTGGTCGTACAAGTGTGTGTGTGAGAAATTATGTCGATGACTGAAGAACATCTGGTGAGTCAAGTGGGTGGAAGTTGCACCATAAACTTCAACATGGTCCCTAAACTATAAAACGTATCTAATAATTCCATAAACTTTCAATTTTGTATCTAACCAGAGATGGAACTTTCAATTTTGTGTTAAATAAGTCACCAACTCAACCAAGCATAGAGGGATTATTGCAGTAATCAAAGTGTGAGATCCCACATCAGTTGGAGACATCAGTTGGAGAGTGAAGCGAAACATTTTTTATATGGGTGTGGAATCTTTTCCCTAACGGACGAGTCTAAAGAGGACAATATCTATTAGTGGTGCACTTGGGCTGTTACAAATGGTATCAGAGTTAGGAACTAGGCGGTGTGCCAGTGAGGAGGTTGGGCTCCAAGTAGGAGGATTGTGAGATCCCACGTAAGTTGGAGAGTGGAACGAGACATTCCTTATAAGGGTGTAGAAACTTTTCCCTAATAGACGCGTTTTAGAATCCTGAGGAAAAACCCGAAAGAAAAACTCAAAGAGGACAATGTGGACTAGGGTTGGGCTTGGACTTGTACACAGAATCATTCAGAACATTTTTTTCCTATAAAACACATATAATGAGAAAGGCAGCAAGGGTTCCAAAGGCAGCAATATCAACAAAACAATCGAAAGGATAGTATACACCATTACTTAAAATCAAAATCAGATAAGGATTGTAACTGTGGGAAATCAAACAACATAAAAATAAAGATAAACCAAATATTCAAAGTCAATTACCTCAAAAAGTAACAATGTAGGCAAGAGAAAGTAAATTTTCCCTCAAGAAAAGAGTATAACACAGTAAAGAAAGTTTCTCACCAACGCTAAACCGAAGAACGAAGATTTCAGAAGTCGTGGCCGTCGTTGAAGACTATCAAAGAAAATACTACAGAAGCCGTCGTCGCTGCCGTGCATGAAGGAAAGAACAAACGCCGTCGCTGGAAATCGCTGTCACTAATGCCGTCGTCTGGTATCCAGAAGTGGTTGCTTTGCCAAGGTTGCAGCGTCGCGCGAGAGGAGACGGCGTGCGTGCTGCGAGTGGGGGAGAATGGAGGCAAGGGAATTAGGTGGTTTTTTATTGGGGGTAGCATTGTAATTTCACAGTCTCAAAAGTCTAATTACCAAAGATGTTTGGATAATGGTTGA

mRNA sequence

ATGCACTTAGGCGTGTGGCAAGAGCAGGTCAGTGATGTGCTGATACAACCTGGGTTACACAAGGCTTTGAAGGGAAGACTGAGTGGTGATACTTCTGAAAAGCTAAGCATTGATTCTAGTCCACTGGCAGGTTTAGCAAAGAAGTCGTGGCCGTCGTTGAAGACTATCAAAGAAAATACTACAGAAGCCGTCGTCGCTGCCGTGCATGAAGGAAAGAACAAACGCCGTCGCTGGAAATCGCTGTCACTAATGCCGTCGTCTGGTATCCAGAAGTGGTTGCTTTGCCAAGGTTGCAGCGTCGCGCGAGAGGAGACGGCGTGCGTGCTGCGAGTGGGGGAGAATGGAGGCAAGGGAATTAGGTGGTTTTTTATTGGGGGTAGCATTGTAATTTCACAGTCTCAAAAGTCTAATTACCAAAGATGTTTGGATAATGGTTGA

Coding sequence (CDS)

ATGCACTTAGGCGTGTGGCAAGAGCAGGTCAGTGATGTGCTGATACAACCTGGGTTACACAAGGCTTTGAAGGGAAGACTGAGTGGTGATACTTCTGAAAAGCTAAGCATTGATTCTAGTCCACTGGCAGGTTTAGCAAAGAAGTCGTGGCCGTCGTTGAAGACTATCAAAGAAAATACTACAGAAGCCGTCGTCGCTGCCGTGCATGAAGGAAAGAACAAACGCCGTCGCTGGAAATCGCTGTCACTAATGCCGTCGTCTGGTATCCAGAAGTGGTTGCTTTGCCAAGGTTGCAGCGTCGCGCGAGAGGAGACGGCGTGCGTGCTGCGAGTGGGGGAGAATGGAGGCAAGGGAATTAGGTGGTTTTTTATTGGGGGTAGCATTGTAATTTCACAGTCTCAAAAGTCTAATTACCAAAGATGTTTGGATAATGGTTGA

Protein sequence

MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPLAGLAKKSWPSLKTIKENTTEAVVAAVHEGKNKRRRWKSLSLMPSSGIQKWLLCQGCSVAREETACVLRVGENGGKGIRWFFIGGSIVISQSQKSNYQRCLDNG
Homology
[Close]
BLAST of Csor.00g051760 vs. NCBI nr
Match: KAG6585676.1 (hypothetical protein SDJN03_18409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296 bits (757), Expect = 4.21e-101
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPLAGLAKKSWPSLKTIKENT 60
           MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPLAGLAKKSWPSLKTIKENT
Sbjct: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPLAGLAKKSWPSLKTIKENT 60

Query: 61  TEAVVAAVHEGKNKRRRWKSLSLMPSSGIQKWLLCQGCSVAREETACVLRVGENGGKGIR 120
           TEAVVAAVHEGKNKRRRWKSLSLMPSSGIQKWLLCQGCSVAREETACVLRVGENGGKGIR
Sbjct: 61  TEAVVAAVHEGKNKRRRWKSLSLMPSSGIQKWLLCQGCSVAREETACVLRVGENGGKGIR 120

Query: 121 WFFIGGSIVISQSQKSNYQRCLDNG 145
           WFFIGGSIVISQSQKSNYQRCLDNG
Sbjct: 121 WFFIGGSIVISQSQKSNYQRCLDNG 145

[Close]
BLAST of Csor.00g051760 vs. NCBI nr
Match: XP_022154929.1 (uncharacterized protein LOC111022075 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 7.46e-07
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPL 42
           ++ G+WQ QV DV+IQ GLHKALKGR S D SEKLS D  P+
Sbjct: 163 INFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPM 204

[Close]
BLAST of Csor.00g051760 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 57.8 bits (138), Expect = 8.54e-07
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPLAGLAKKSWPSL-----KT 60
           ++ G+WQ QV DVLIQ GLHKAL+G++S   SEK        + ++   W  L      T
Sbjct: 19  INFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEKSE------SSMSDGDWEELDLRAAST 78

Query: 61  IKENTTEAVVAAVHEGKNKRRRWKSLS-LMPSSGIQKWLL 94
           I+ +  + V+A V      +  WK L  L  + GI  WL+
Sbjct: 79  IRLSLAKNVLANVQGISTAKELWKKLEGLYQAKGISNWLM 112

[Close]
BLAST of Csor.00g051760 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 4.53e-06
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPL------------AGLAKK 60
           ++ G+WQ QV DVLIQ  LHKALKGR S   SEKLS D  P+            + ++ +
Sbjct: 313 INFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSGGSSRGSKKSSMSYE 372

Query: 61  SWPSL-----KTIKENTTEAVVAAVHEGKNKRRRWKSL-SLMPSSGIQKWL 93
            W  +       I+ +  + ++A VH     +  W+ L +L  + GI   L
Sbjct: 373 DWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRL 423

[Close]
BLAST of Csor.00g051760 vs. NCBI nr
Match: KAF7823890.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 52.8 bits (125), Expect = 4.37e-05
Identity = 44/121 (36.36%), Postives = 58/121 (47.93%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPLAGLAKKSWPSL-----KT 60
           ++ G W+ QV DVLIQ GLHKAL+G++S   SEK   +SS   G     W  L      T
Sbjct: 67  INFGFWKVQVKDVLIQSGLHKALEGKVSSKDSEKS--ESSMSGG----DWEELDLRAAST 126

Query: 61  IKENTTEAVVAAVHEGKNKRRRWKSLS-LMPSSGIQKWLLCQGCSVAREETACVLRVGEN 115
           I     + V+A V E    +  WK L  L  + GI   LL        +E    LR+ E+
Sbjct: 127 IHLCLAKNVLANVQEISTAKELWKKLEGLYQAKGISNRLLL-------KEQFHTLRMNED 174

[Close]
BLAST of Csor.00g051760 vs. ExPASy TrEMBL
Match: A0A6J1DNQ5 (uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022075 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.61e-07
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPL 42
           ++ G+WQ QV DV+IQ GLHKALKGR S D SEKLS D  P+
Sbjct: 163 INFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPM 204

[Close]
BLAST of Csor.00g051760 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.19e-06
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 0 

Query: 1   MHLGVWQEQVSDVLIQPGLHKALKGRLSGDTSEKLSIDSSPL------------AGLAKK 60
           ++ G+WQ QV DVLIQ  LHKALKGR S   SEKLS D  P+            + ++ +
Sbjct: 313 INFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSGGSSRGSKKSSMSYE 372

Query: 61  SWPSL-----KTIKENTTEAVVAAVHEGKNKRRRWKSL-SLMPSSGIQKWL 93
            W  +       I+ +  + ++A VH     +  W+ L +L  + GI   L
Sbjct: 373 DWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRL 423

[Close]
BLAST of Csor.00g051760 vs. ExPASy TrEMBL
Match: A0A2P5D0W5 (Pol-like polyprotein/retrotransposon OS=Trema orientale OX=63057 GN=TorRG33x02_266280 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.94e-04
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 1  MHLGVWQEQVSDVLIQPGLHKALKGR--LSGDTSEKLSIDSSPLAGLAKKSWPSLK 54
          ++ G+WQ QV D+LIQ GLHKALKGR  L G  SEK S+       L +++  +++
Sbjct: 21 INFGLWQIQVKDLLIQSGLHKALKGREALKGRDSEKSSMSDEDWEDLDERAASAIR 76

The following BLAST results are available for this feature:
BLAST of Csor.00g051760 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g051760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585676.14.21e-101100.00hypothetical protein SDJN03_18409, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022154929.17.46e-0764.29uncharacterized protein LOC111022075 [Momordica charantia][more]
KAF7802225.18.54e-0736.00cytochrome p450 [Senna tora][more]
XP_022139673.14.53e-0633.33uncharacterized protein LOC111010521 [Momordica charantia][more]
KAF7823890.14.37e-0536.36cytochrome p450 [Senna tora][more]
BLAST of Csor.00g051760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNQ53.61e-0764.29uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CG822.19e-0633.33uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A2P5D0W56.94e-0444.64Pol-like polyprotein/retrotransposon OS=Trema orientale OX=63057 GN=TorRG33x02_2... [more]
BLAST of Csor.00g051760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g051760.m01Csor.00g051760.m01mRNA