Csor.00g051650 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g051650
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 3153575 .. 3156073 (+)
RNA-Seq ExpressionCsor.00g051650
SyntenyCsor.00g051650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGCCGTCGTCCATGGTGGCAGGGGAGCCATTGGTAATGGCATACGCCTCCTCCTCGATGCTTAGCGCGACAAAAGCAGCTTCGTCCGCTGGAATAGTGCCGTATCGCTTAGAGAACATTGAAGGGGAGGAAAGGGTTTCGATCAGACGGCTGATAACGGCGTCGCGAGTGCGCTGCGTTGATGGCCATATGCTGAATTTGGTACCGAGTGGCTTGGCAGGTATAATGGATTCTTTGATTTTACTCGGAATGTTTGATTTTACTCGAATGTTAGATATTTGTGTATATTCGATATAAATGATTATAAATAGAGAACTTTTATAAAAAAAAATTAATTATTAATATTTTATTATACATTCTAAAAATATTCTTAAAATTTTTTAAATTATTTTAAATTCTATTGAAATAATGGTTGTGGTCGCATGTAACTTGTATAGAACGAATAATTGTCTTTAGAACAATATTTCGTAAGCTTACTTCTCAACTTCTAATTAACTATGTCGTAAGAACTTGAGGTTGTACGCTCGTTAGTGGTAACTATAGTTTATAACTTTTATTTTTCGTCTGTTAGCTTCTTGAGTAAGGAAATTATTATCATAATAGTGTCCGTATGATTATTATATTATAATTATTGTAGCAATTTAAGTATAATTAGTTGACTAGTACTACTAAATTTTTGCATACGTCGTTGGGAGAAAGAATACTTGTTAGGTAATGCTTGAATATTCTGATACCTAAGTTAGTGACGTGGTCGAAATAGTGGAAGAGTTGAATATATGTAAAATTGTGTATTTTTATGTTGCGCTAGACCTCCATTTACACTACTTTCACTTTATAAGAGTGTTGTATCTTCGGAGTTGGACGTTAATCTATATGGTGGGATTGGTGCCCACTTTCCACAGTGCTCGATCATTTGATAATATCTTGACTATGTTGTTGAATAGTCCCAAATCGTTCTAAATATATATGTTTGATGGGTTGGAGTGAACCGAGGTTTGTTAGCTAGCTTTGAGTCGGTCCTTAATAAATATAATACTTCAAATAAATTTTCTTTAACAAAGAAATTATATTATAAAACTTGAAATTAATGAGTGGACGTAGCTAAAATGAGGAAGAAGGTTGCTTCAAAAATGGTAAAACTAAAACTAAAAAATAAAAAAGACATTGATAGTTCTCTTATATGAAAATGACAGTTCATAAATTCTACTCCAAACTTATGAACAAGACATGTTCCTATTCTAACACTAAAATTGTTCCAAAAGTTGGTTTTCAAGTCTCGGAGCTCTATTATCGATTCAAATTTATCCAACATAAAATTGGTCTAAGCAAAGCACGCTTAATCATGAAGTTCTTATGATTAAACCACCGAAACATAAGATGCACCTCATTAATAAAGATAGTAACTTTTACTTCTTTTAAGACATTTTTTAGTTATCTTATCCTCAAGATCATCCTTGTTTAGACATAATCTCAATTCATTTATGTACACATTCTTTACTTGAGTGTCACGTCAAATTTATAATTCAACTTGAAAAATTCACTATGCTCACATGACTTTTAAAGCAAAAAAAAAAAAAAAAAACACAAGTCCTACTCTAAAAGAAAAAAGAAAAAAAATTTAATTCATCATTAATTATATGGCCGAACATTAACAAATTCATTTGATAGATATATGGACTAAATTATTAATGTATCATTGTAACGATAGCACATATATTATCTAGATTCATTATTTAATATTTGATACATGAAATGGTCATGGAATATGCTCCAAAGTTCCGTATAAGGACCCGTCTATGTAAAAATAAAAAAAATACATCCAAAAGGGGTTAGATTTGAGGGAAAAAAAAACTAATTATCTCAAAATCAATCACTTAAAAGTCAAAATAAAACTAAAACTAGATGACTAATTATCAAACAAACCTCATCCTATCTCATAAAATTGTAACTTTCCATTATCTTCCAAAGGAATGAAATATCCAGCTGCGTTATCCCATAAGACAAGCCACAGCCAAACTTGACACCATACCAGATTACACAATCGCCGTAAAAACTAATCACATAAAAGCTTCTTGTATGATCGAACAGCCAGGCAGCCATCCAAAGACAACCAAAATGTTGTTACATATATATAATATAAAAGTATGAAGATTTTGTTTATATATACCGATGAAAGGAGAAAGAAAAGGAAGAGAAAAGGGGAAGAAAACTCAACGATTGTGGAGTGGATCTGAAGCATTTGGGACCTTCCTCTTACTGGACATGAACACATGGAATGGCCTCATCCTACGTTGCTCTTTCATTTGTCTGTTGCCGTCTTTGGTTGCTTGGCTTGGTAGCTTCACGGTATTGGTATTGGCTTCTCCATTAATGTCGCCTGAGAGGAGGAGCAGCAGCAGCAGCAAGGCCACCGCCATGAACGGCAGCTTGAAGAACCGCATGGAAAGAGAGGCAGAAGGGAAAAGGCGAGTGGGTTTGTCTGTTGGGCAGTGA

mRNA sequence

ATGTCGATGCCGTCGTCCATGGTGGCAGGGGAGCCATTGGTAATGGCATACGCCTCCTCCTCGATGCTTAGCGCGACAAAAGCAGCTTCGTCCGCTGGAATAGTGCCGTATCGCTTAGAGAACATTGAAGGGGAGGAAAGGGTTTCGATCAGACGGCTGATAACGGCGTCGCGAGTGCGCTGCGTTGATGGCCATATGCTGAATTTGGTACCGAGTGGCTTGGCAGGAGAAAGAAAAGGAAGAGAAAAGGGGAAGAAAACTCAACGATTGTGGAGTGGATCTGAAGCATTTGGGACCTTCCTCTTACTGGACATGAACACATGGAATGGCCTCATCCTACGTTGCTCTTTCATTTGTCTGTTGCCGTCTTTGGTTGCTTGGCTTGGTAGCTTCACGGTATTGGTATTGGCTTCTCCATTAATGTCGCCTGAGAGGAGGAGCAGCAGCAGCAGCAAGGCCACCGCCATGAACGGCAGCTTGAAGAACCGCATGGAAAGAGAGGCAGAAGGGAAAAGGCGAGTGGGTTTGTCTGTTGGGCAGTGA

Coding sequence (CDS)

ATGTCGATGCCGTCGTCCATGGTGGCAGGGGAGCCATTGGTAATGGCATACGCCTCCTCCTCGATGCTTAGCGCGACAAAAGCAGCTTCGTCCGCTGGAATAGTGCCGTATCGCTTAGAGAACATTGAAGGGGAGGAAAGGGTTTCGATCAGACGGCTGATAACGGCGTCGCGAGTGCGCTGCGTTGATGGCCATATGCTGAATTTGGTACCGAGTGGCTTGGCAGGAGAAAGAAAAGGAAGAGAAAAGGGGAAGAAAACTCAACGATTGTGGAGTGGATCTGAAGCATTTGGGACCTTCCTCTTACTGGACATGAACACATGGAATGGCCTCATCCTACGTTGCTCTTTCATTTGTCTGTTGCCGTCTTTGGTTGCTTGGCTTGGTAGCTTCACGGTATTGGTATTGGCTTCTCCATTAATGTCGCCTGAGAGGAGGAGCAGCAGCAGCAGCAAGGCCACCGCCATGAACGGCAGCTTGAAGAACCGCATGGAAAGAGAGGCAGAAGGGAAAAGGCGAGTGGGTTTGTCTGTTGGGCAGTGA

Protein sequence

MSMPSSMVAGEPLVMAYASSSMLSATKAASSAGIVPYRLENIEGEERVSIRRLITASRVRCVDGHMLNLVPSGLAGERKGREKGKKTQRLWSGSEAFGTFLLLDMNTWNGLILRCSFICLLPSLVAWLGSFTVLVLASPLMSPERRSSSSSKATAMNGSLKNRMEREAEGKRRVGLSVGQ
Homology
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BLAST of Csor.00g051650 vs. NCBI nr
Match: KAG6585687.1 (hypothetical protein SDJN03_18420, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334 bits (857), Expect = 3.34e-115
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MSMPSSMVAGEPLVMAYASSSMLSATKAASSAGIVPYRLENIEGEERVSIRRLITASRVR 60
           MSMPSSMVAGEPLVMAYASSSMLSATKAASSAGIVPYRLENIEGEERVSIRRLITASRVR
Sbjct: 1   MSMPSSMVAGEPLVMAYASSSMLSATKAASSAGIVPYRLENIEGEERVSIRRLITASRVR 60

Query: 61  CVDGHMLNLVPSGLAGERKGREKGKKTQRLWSGSEAFGTFLLLDMNTWNGLILRCSFICL 120
           CVDGHMLNLVPSGLAGERKGREKGKKTQRLWSGSEAFGTFLLLDMNTWNGLILRCSFICL
Sbjct: 61  CVDGHMLNLVPSGLAGERKGREKGKKTQRLWSGSEAFGTFLLLDMNTWNGLILRCSFICL 120

Query: 121 LPSLVAWLGSFTVLVLASPLMSPERRSSSSSKATAMNGSLKNRMEREAEGKRRVGLSVGQ 180
           LPSLVAWLGSFTVLVLASPLMSPERRSSSSSKATAMNGSLKNRMEREAEGKRRVGLSVGQ
Sbjct: 121 LPSLVAWLGSFTVLVLASPLMSPERRSSSSSKATAMNGSLKNRMEREAEGKRRVGLSVGQ 180

The following BLAST results are available for this feature:
BLAST of Csor.00g051650 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g051650 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585687.13.34e-115100.00hypothetical protein SDJN03_18420, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g051650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g051650 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g051650.m01Csor.00g051650.m01mRNA