Csor.00g051450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g051450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSmall VCP/p97-interacting protein
LocationCsor_Chr12: 3264299 .. 3265833 (-)
RNA-Seq ExpressionCsor.00g051450
SyntenyCsor.00g051450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAATGCGTGAGTTGTCTGGACGAAGACCAAAAGCAACAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTTGAAGCTCGGTCCAAAGCTGCCGAAGCAGCTCAGAGAAGGTAGCTTCCTCCTCCCTCACTTTTAGCTTTCATTCGGAACTTCTGTACATCTTGATCGATCCTTTACAATTAGAGCAGTTTATCATTTGATTAGGGCCATCGTTGATCGTTATGTTTTTTGATCAGCACTTCGATCTTGTTAGTCAATGTTAATTGTTCAGATTGTTGGATGATGAAAGTCACACGGCGGCTAATTTAGGGAATGATCATGAGTTTATAATCAAATAATACTATTTCGAGGCCTTTTGGGGAAGCCCAAAGAAAATCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGTTCATCTAATATGGTATCAGAGCTATGCCCTAAACTTAGCCATGCCAATAAAATCCTTAAATGTCGAACAAAGGACTCCAAAAGAAAAGGAGCCGAGCCTCGATTAAGGGGAGGCGTTGGATGATGAAAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAAGAATACTATCTCATTGGTACGAGGCCTTTTAGGAAAGCCCAAAGCAAAGCCATGAAAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTTTTTGGGTCTTTTGTTAAGAAGGGCTATCGTTGATCGTTATGTTTTTGTCACGAAGATTGCTTAATTTTTTTTTTTTTTTTTTTTTTTAAGCAGTCGAATGAAGCTTAGTCTTCAGGTTTATAGATTTAACTACTTTTTCCTACAAAATTCTAATTGCCCTAAAGAAAACCGAGGAAGAAAGCAAGAAAAAGAAGCCATGAGTGCTCTAATTTGGGATGAATGAAATGCCCCCACCAATCTTTTCCTAAAAAGTTCACTTGGGCATACATTAATTACTTGTTCATACTAAGGATGTATCTGCTATAGTTAACATCGAACTATTGAAGTACTTCCAGCTTCTCCTTTTGATGATGAATTGAGCATTCAGTCTTAAATGAAACGAGAAATTCAAATCAGAAGCTATGATTGAAATCATCCATGTTTTTTTTGTACTGTAATGATATAAATATTTGCAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACGCTAACAAGGGAGAACCAGTTCTTAAGGTCATTCAAATTCCAGTTGTGTTTGTTGTTTGTTAATTGATATTATATGGTCAGTTATATTTAGATTCTTTATCGTGGTCGGTAATATAGCTTAAAAGAACCCCATAATATTTTCGCTCATAGAATTTGTTTCACTTTAGATGCAGTTTATCAGAGCATGTGATGATAGGCCTTGTTTGCTAACAGATGATAATATAGCAAGTGATTCAAAACTTTTCTACTTGTTTTTGTTTATGCAGTGGAGTATGGGCTGA

mRNA sequence

ATGGGGCAATGCGTGAGTTGTCTGGACGAAGACCAAAAGCAACAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTTGAAGCTCGGTCCAAAGCTGCCGAAGCAGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACGCTAACAAGGGAGAACCAGTTCTTAAGTGGAGTATGGGCTGA

Coding sequence (CDS)

ATGGGGCAATGCGTGAGTTGTCTGGACGAAGACCAAAAGCAACAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTTGAAGCTCGGTCCAAAGCTGCCGAAGCAGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACGCTAACAAGGGAGAACCAGTTCTTAAGTGGAGTATGGGCTGA

Protein sequence

MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAKQSANANKGEPVLKWSMG
Homology
[Close]
BLAST of Csor.00g051450 vs. NCBI nr
Match: XP_022951067.1 (uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_023002620.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023002621.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023537497.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537499.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537500.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >KAG6585707.1 hypothetical protein SDJN03_18440, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 2.91e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSANANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137 bits (344), Expect = 5.10e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 20 MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 79

Query: 61 QSANANKGEPVLKWSMG 77
          QSANANKGEPVLKWSMG
Sbjct: 80 QSANANKGEPVLKWSMG 96

[Close]
BLAST of Csor.00g051450 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 130 bits (327), Expect = 1.14e-37
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 129 bits (324), Expect = 3.28e-37
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. NCBI nr
Match: XP_011649565.1 (uncharacterized protein LOC101210682 [Cucumis sativus])

HSP 1 Score: 127 bits (318), Expect = 2.70e-36
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLD  QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSA ANKGEPVLKWSMG
Sbjct: 61 QSATANKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 1.41e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSANANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 1.41e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSANANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 5.54e-38
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 7.58e-36
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQC SCLDE Q+Q+RKEEERLASVEAR+KAAEAAQ+RQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. ExPASy TrEMBL
Match: A0A6J1BPP8 (uncharacterized protein LOC111004688 OS=Momordica charantia OX=3673 GN=LOC111004688 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 7.58e-36
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQC+ CLDE QKQQR+EEERL+SVEAR+KAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCLGCLDEGQKQQRQEEERLSSVEARAKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 77
          QSAN N+GEPVLKWSMG
Sbjct: 61 QSANTNRGEPVLKWSMG 77

[Close]
BLAST of Csor.00g051450 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 6.8e-21
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 4  CVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAKQSA 63
          C SC D  QK+QRKEEER AS EAR+KAAEAAQRR+E+F+KSAAGRAA+AQ+   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 NANKGEPVLKWSM 77
          N NKGEPVLKW M
Sbjct: 63 NTNKGEPVLKWQM 75

The following BLAST results are available for this feature:
BLAST of Csor.00g051450 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g051450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951067.12.91e-40100.00uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 unchar... [more]
KAG7020610.15.10e-40100.00hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_008444542.11.14e-3794.81PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo][more]
XP_038886006.13.28e-3793.51uncharacterized protein LOC120076314 [Benincasa hispida][more]
XP_011649565.12.70e-3693.51uncharacterized protein LOC101210682 [Cucumis sativus][more]
BLAST of Csor.00g051450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KLT21.41e-40100.00uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424... [more]
A0A6J1GGM51.41e-40100.00uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540... [more]
A0A1S3BAJ05.54e-3894.81uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=... [more]
A0A6J1K8467.58e-3689.61uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013... [more]
A0A6J1BPP87.58e-3689.61uncharacterized protein LOC111004688 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
BLAST of Csor.00g051450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63905.16.8e-2175.34unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..47
NoneNo IPR availablePANTHERPTHR36813TRANSMEMBRANE PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR36813:SF1TRANSMEMBRANE PROTEINcoord: 1..77
IPR031632Small VCP/p97-interacting proteinPFAMPF15811SVIPcoord: 1..73
e-value: 5.6E-12
score: 45.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g051450.m01Csor.00g051450.m01mRNA