Csor.00g051240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g051240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	zinc finger CCCH domain-containing protein 20-like
Location	Csor_Chr12: 3426843 .. 3427784 (+)
RNA-Seq Expression	Csor.00g051240
Synteny	Csor.00g051240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACTGAATCAATGCTTCTCAATCCATCCGCCCATTTTTCATCCTGGGATTCCCTCGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGCCGGTCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCGAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

mRNA sequence

ATGATCACTGAATCAATGCTTCTCAATCCATCCGCCCATTTTTCATCCTGGGATTCCCTCGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGCCGGTCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCGAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Coding sequence (CDS)

ATGATCACTGAATCAATGCTTCTCAATCCATCCGCCCATTTTTCATCCTGGGATTCCCTCGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGCCGGTCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCGAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Protein sequence

MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPRIRPLISAGSQS

Homology

[Close]

BLAST of Csor.00g051240 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.0e-68
Identity = 149/341 (43.70%), Postives = 186/341 (54.55%), Query Frame = 0


Query: 9   NPSAHFSSWDSLDDPTAA-------------ATAAAISSYLTAGHVSPLDSPTRAVMEFD 68
           NP+ H   W   +D T +                A +  YL +    P   P  +  +  
Sbjct: 11  NPTVHIPPWPLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLSGPD-- 70

Query: 69  SSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFS 128
                     + +DA+TCD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF 
Sbjct: 71  ----------SPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQ 188
           YSGT CP  R GCCK+GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q
Sbjct: 131 YSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQ 190

Query: 189 LRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSR------ 248
           +R+   QS     +   ++  +       ISP  +SPP+SP     +     SR      
Sbjct: 191 IRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNL 250

Query: 249 ---LVPLMHNLQLDKSKK------NPAVSGFDS---SPR---------------RNSGGF 302
              +V  + NLQL+K K       N  + G+ S   SPR                  G  
Sbjct: 251 GNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFM 310

[Close]

BLAST of Csor.00g051240 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-65
Identity = 147/314 (46.82%), Postives = 185/314 (58.92%), Query Frame = 0


Query: 9   NPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSP------LDS---------PTRAVME 68
           +P+ H   WD ++DPTA  ++   S  L + +  P      LDS               +
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  FDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRK 128
            DSS  +E       D+F+ D+FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRK
Sbjct: 71  SDSSSGDESS--PLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRK 130

Query: 129 FSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTL 188
           F YSGT CP  R G C++GD+CEF+HG FE WLHP RYRTQPC+DG +CRRR+CFFAHT 
Sbjct: 131 FHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTT 190

Query: 189 EQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMH 248
           EQLR+      + P      +   TSPTSIL+SP   P S   P++    S   L+  M 
Sbjct: 191 EQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPPSESPPLS---PSTGELIASMR 250

Query: 249 NLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR----TFEEEPAMERVESGRNL 297
            +QL+    S  +P  S     F SS R        W R      EE PAME VESG+ L
Sbjct: 251 KMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFVESGKEL 310

[Close]

BLAST of Csor.00g051240 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 5.7e-63
Identity = 148/342 (43.27%), Postives = 189/342 (55.26%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MI E+    P+     W  L++ T   T+   S  + +   S L++         S+  +
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELT---TSEFFSPVMNSPDCSMLEALAGLQRYLPSNEPD 61

Query: 61  EQDLP------AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKF 120
            +  P      + +DA++CD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK+
Sbjct: 62  PESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKY 121

Query: 121 SYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLE 180
            YSGT CP  R G CKKGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +
Sbjct: 122 HYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPD 181

Query: 181 QLRIPAKQS--------LMSPRAAKEIAAAVTSPTSILISPDSPPMSP-----ISPVT-- 240
           QLR    +S        + SP  A+    ++ SP S      SPPMSP      SP+T  
Sbjct: 182 QLRFLHTRSPDRVDSFDVSSPIRARAFQLSI-SPVS-----GSPPMSPRADSESSPMTQS 241

Query: 241 ----TGGESFSRLVPLMHNLQLDKSKKNPAVS---------------GFDSSPR--RNSG 300
                G  S + +VP   NLQ +  K  P  +               GF S P      G
Sbjct: 242 LSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPG 301

[Close]

BLAST of Csor.00g051240 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 6.5e-59
Identity = 133/303 (43.89%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 60  EEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGT 119
           E   + AAVDA+ CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPRK+ YSGT
Sbjct: 61  EAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGT 120

Query: 120 ECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI- 179
            CP  R G CK+GDACE+AHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ 
Sbjct: 121 ACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 180

Query: 180 PAKQSLMSPRAAKEIAAAV--------------------TSPTSILISP------DSPPM 239
           PA+QS     A+  +A +                     +SPTS L+SP      +SPP+
Sbjct: 181 PAQQSSPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPL 240

Query: 240 SP--ISPVTTG-----GESFSRLVPLMHNLQLDKSKKN-------PAVSGFDSSPRRNSG 297
           SP   + +  G     G   + ++     L+L+K K +       P+ S    SP+  +G
Sbjct: 241 SPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATG 300

[Close]

BLAST of Csor.00g051240 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-55
Identity = 146/380 (38.42%), Postives = 190/380 (50.00%), Query Frame = 0


Query: 6   MLLNPSAHFSSWDS-LDDPTAAAT-AAAISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQD 65
           M++   AH   W   +  P +         S + A     LD+    +   +++  E+++
Sbjct: 2   MMMGEGAHAPPWQQHVASPVSGVEGGGGRESEVVAAPYHLLDTLRHYLPSNEAAAAEDEE 61

Query: 66  ----LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGT 125
               + AAVDA+ CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR++ YSGT
Sbjct: 62  EAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGT 121

Query: 126 ECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI- 185
            CP  R G CK+GDACEFAHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ 
Sbjct: 122 ACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 181

Query: 186 --PAKQSLMSPR---------AAKEIAAAV--------------------TSPTSILISP 245
               +Q   SPR         AA  +A +                     +SPTS L+SP
Sbjct: 182 PPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSP 241

Query: 246 DSPPMS---PISPVTTG----------GESFSRLVPLMHNLQLDKSKKNPAVSGF----- 297
              P S   P+SP   G          G   + +   +  L+L   +  P+ + F     
Sbjct: 242 PRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGY 301

[Close]

BLAST of Csor.00g051240 vs. NCBI nr
Match: KAG6585728.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 637 bits (1643), Expect = 1.38e-230
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE
Sbjct: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE
Sbjct: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA
Sbjct: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240
           KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS
Sbjct: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240

Query: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300
           KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR
Sbjct: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300

Query: 301 PRIRPLISAGSQS 313
           PRIRPLISAGSQS
Sbjct: 301 PRIRPLISAGSQS 313

[Close]

BLAST of Csor.00g051240 vs. NCBI nr
Match: XP_023537964.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 612 bits (1578), Expect = 9.64e-221
Identity = 302/313 (96.49%), Postives = 304/313 (97.12%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLT GHVSPLDSPTRAVMEFDSSFWE
Sbjct: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           EQD+PAAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP AH GEKARRRDPRKF+YSGTE
Sbjct: 61  EQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CPALRHGCC KGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA
Sbjct: 121 CPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240
           KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS
Sbjct: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240

Query: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300
           KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR
Sbjct: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300

Query: 301 PRIRPLISAGSQS 313
           P    LISAGSQS
Sbjct: 301 P----LISAGSQS 309

[Close]

BLAST of Csor.00g051240 vs. NCBI nr
Match: XP_022951066.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 609 bits (1570), Expect = 1.38e-219
Identity = 302/313 (96.49%), Postives = 305/313 (97.44%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MITESMLLNPSAHFSSWDSLDDPTAAA    ISSYLTAGHVSPLDSPTRAVMEFDSSFWE
Sbjct: 1   MITESMLLNPSAHFSSWDSLDDPTAAA----ISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           EQ+LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKF+YSGTE
Sbjct: 61  EQELPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA
Sbjct: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240
           KQSLMSPRAAKEIA+AVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS
Sbjct: 181 KQSLMSPRAAKEIASAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240

Query: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300
           KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR
Sbjct: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300

Query: 301 PRIRPLISAGSQS 313
           P    LISAGSQS
Sbjct: 301 P----LISAGSQS 305

[Close]

BLAST of Csor.00g051240 vs. NCBI nr
Match: XP_023002826.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 599 bits (1544), Expect = 1.41e-215
Identity = 299/313 (95.53%), Postives = 301/313 (96.17%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MITESMLLNP AHFSSWDSLDDPT AA AAAISSYLT+GHVSPLDSPTRAVMEFDSSFWE
Sbjct: 1   MITESMLLNPLAHFSSWDSLDDPTVAA-AAAISSYLTSGHVSPLDSPTRAVMEFDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAH GEKARRRDPRKF+YSGTE
Sbjct: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA
Sbjct: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240
           KQSLMSPRA KEI AAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS
Sbjct: 181 KQSLMSPRAGKEIDAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240

Query: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300
           KK PAVSGF SSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR
Sbjct: 241 KKIPAVSGFVSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300

Query: 301 PRIRPLISAGSQS 313
           P    LISAGSQS
Sbjct: 301 P----LISAGSQS 308

[Close]

BLAST of Csor.00g051240 vs. NCBI nr
Match: KAG7020635.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 552 bits (1422), Expect = 2.12e-197
Identity = 269/274 (98.18%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 40  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 99
           HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72

Query: 100 AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDG 159
           AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132

Query: 160 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 219
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT
Sbjct: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 192

Query: 220 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 279
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252

Query: 280 RNLRAQMYAKLMRENSVDRIRPRIRPLISAGSQS 313
           RNLRAQMYAKLMRENSVDRIRP    LISAGSQS
Sbjct: 253 RNLRAQMYAKLMRENSVDRIRP----LISAGSQS 282

[Close]

BLAST of Csor.00g051240 vs. ExPASy TrEMBL
Match: A0A6J1GGI4 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111454027 PE=4 SV=1)

HSP 1 Score: 609 bits (1570), Expect = 6.66e-220
Identity = 302/313 (96.49%), Postives = 305/313 (97.44%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MITESMLLNPSAHFSSWDSLDDPTAAA    ISSYLTAGHVSPLDSPTRAVMEFDSSFWE
Sbjct: 1   MITESMLLNPSAHFSSWDSLDDPTAAA----ISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           EQ+LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKF+YSGTE
Sbjct: 61  EQELPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA
Sbjct: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240
           KQSLMSPRAAKEIA+AVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS
Sbjct: 181 KQSLMSPRAAKEIASAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240

Query: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300
           KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR
Sbjct: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300

Query: 301 PRIRPLISAGSQS 313
           P    LISAGSQS
Sbjct: 301 P----LISAGSQS 305

[Close]

BLAST of Csor.00g051240 vs. ExPASy TrEMBL
Match: A0A6J1KMD9 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111496573 PE=4 SV=1)

HSP 1 Score: 599 bits (1544), Expect = 6.85e-216
Identity = 299/313 (95.53%), Postives = 301/313 (96.17%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MITESMLLNP AHFSSWDSLDDPT AA AAAISSYLT+GHVSPLDSPTRAVMEFDSSFWE
Sbjct: 1   MITESMLLNPLAHFSSWDSLDDPTVAA-AAAISSYLTSGHVSPLDSPTRAVMEFDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAH GEKARRRDPRKF+YSGTE
Sbjct: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA
Sbjct: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240
           KQSLMSPRA KEI AAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS
Sbjct: 181 KQSLMSPRAGKEIDAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKS 240

Query: 241 KKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300
           KK PAVSGF SSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR
Sbjct: 241 KKIPAVSGFVSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIR 300

Query: 301 PRIRPLISAGSQS 313
           P    LISAGSQS
Sbjct: 301 P----LISAGSQS 308

[Close]

BLAST of Csor.00g051240 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 2.75e-178
Identity = 248/315 (78.73%), Postives = 270/315 (85.71%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MI ESMLLNP+AH S+WDSLDDP+AA     ISSY +AGHVSPLDSPT A+M+FDSS WE
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAA-----ISSYFSAGHVSPLDSPTAALMDFDSSLWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           + DLPA VD F+CD FRMYEFKVRSCARGRSHDWTKCPYAH GEKARRRDPRKF+YSG E
Sbjct: 61  DPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CP LRHGCCKKGDACE+AHGTFEIWLHPDRYRTQPCRDG  CRRRVCFFAHT EQLRIP 
Sbjct: 121 CPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPG 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQLD 240
           KQS+ SPRA +    AV+SPTSIL+SP  DSPP+SPISPV +GGESFSRLV LMH+L+LD
Sbjct: 181 KQSVRSPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLD 240

Query: 241 KSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDR 300
           + K NP VS F  + RRNSG FDLWDR  EEEPAMERVESGRNLRAQMYAKLMRENSVDR
Sbjct: 241 ELKTNPGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDR 300

Query: 301 IRPRIRPLISAGSQS 313
           +RP    LISAGSQ+
Sbjct: 301 VRP----LISAGSQN 306

[Close]

BLAST of Csor.00g051240 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 3.20e-177
Identity = 247/315 (78.41%), Postives = 269/315 (85.40%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MI ESMLLNP+AH S+WDSLDDP+AA     ISSY +AGHVSPLDSPT A+M+FDSS WE
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAA-----ISSYFSAGHVSPLDSPTAALMDFDSSLWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           + DLPA VD F+CD FRMYEFKVRSCARGRSHDWTKCPYAH GEKARRRDPRKF+YSG E
Sbjct: 61  DPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CP LRHGCCKKGDACE+AHGTFEIWLHPDRYRTQPCRDG  CRRRVCFFAHT EQLRIP 
Sbjct: 121 CPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPG 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQLD 240
           KQS+ SPRA +    AV+SPTSIL+SP  DSPP+SPISPV +GGES SRLV LMH+L+LD
Sbjct: 181 KQSVRSPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLD 240

Query: 241 KSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDR 300
           + K NP VS F  + RRNSG FDLWDR  EEEPAMERVESGRNLRAQMYAKLMRENSVDR
Sbjct: 241 EXKTNPGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDR 300

Query: 301 IRPRIRPLISAGSQS 313
           +RP    LISAGSQ+
Sbjct: 301 VRP----LISAGSQN 306

[Close]

BLAST of Csor.00g051240 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 495 bits (1274), Expect = 8.75e-175
Identity = 245/315 (77.78%), Postives = 265/315 (84.13%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MI ESM LNP+ H SSWDSLDDP     AAAI SY TAG+VSPLDSPT AVM++DSSFWE
Sbjct: 1   MINESMFLNPTPHISSWDSLDDP-----AAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWE 60

Query: 61  EQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTE 120
           +QDLPA VDAFTCD FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPRKF+YSGTE
Sbjct: 61  DQDLPAIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTE 120

Query: 121 CPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPA 180
           CP LRHGCC KGDACE+AHG FEIWLHPDRYRTQPCRDG  CRRRVCFFAH+ EQLRIP 
Sbjct: 121 CPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPG 180

Query: 181 KQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQLD 240
           KQS+ SPR  +  A AV+SPTSILIS   DSPPMSPISP+ TGGESFSRLV LMHNL  D
Sbjct: 181 KQSIRSPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFD 240

Query: 241 KSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDR 300
           + K NP +SGF  S RRNSG FD WDR  EEEPAMERVESGRNLRAQMYAKLMR+NSV+R
Sbjct: 241 ELKTNPGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVER 300

Query: 301 IRPRIRPLISAGSQS 313
           +RP    LI AGS++
Sbjct: 301 VRP----LILAGSRN 306

[Close]

BLAST of Csor.00g051240 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-69
Identity = 149/341 (43.70%), Postives = 186/341 (54.55%), Query Frame = 0


Query: 9   NPSAHFSSWDSLDDPTAA-------------ATAAAISSYLTAGHVSPLDSPTRAVMEFD 68
           NP+ H   W   +D T +                A +  YL +    P   P  +  +  
Sbjct: 11  NPTVHIPPWPLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLSGPD-- 70

Query: 69  SSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFS 128
                     + +DA+TCD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF 
Sbjct: 71  ----------SPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQ 188
           YSGT CP  R GCCK+GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q
Sbjct: 131 YSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQ 190

Query: 189 LRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSR------ 248
           +R+   QS     +   ++  +       ISP  +SPP+SP     +     SR      
Sbjct: 191 IRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNL 250

Query: 249 ---LVPLMHNLQLDKSKK------NPAVSGFDS---SPR---------------RNSGGF 302
              +V  + NLQL+K K       N  + G+ S   SPR                  G  
Sbjct: 251 GNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFM 310

[Close]

BLAST of Csor.00g051240 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 251.5 bits (641), Expect = 8.7e-67
Identity = 147/314 (46.82%), Postives = 185/314 (58.92%), Query Frame = 0


Query: 9   NPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSP------LDS---------PTRAVME 68
           +P+ H   WD ++DPTA  ++   S  L + +  P      LDS               +
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  FDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRK 128
            DSS  +E       D+F+ D+FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRK
Sbjct: 71  SDSSSGDESS--PLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRK 130

Query: 129 FSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTL 188
           F YSGT CP  R G C++GD+CEF+HG FE WLHP RYRTQPC+DG +CRRR+CFFAHT 
Sbjct: 131 FHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTT 190

Query: 189 EQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMH 248
           EQLR+      + P      +   TSPTSIL+SP   P S   P++    S   L+  M 
Sbjct: 191 EQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPPSESPPLS---PSTGELIASMR 250

Query: 249 NLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR----TFEEEPAMERVESGRNL 297
            +QL+    S  +P  S     F SS R        W R      EE PAME VESG+ L
Sbjct: 251 KMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFVESGKEL 310

[Close]

BLAST of Csor.00g051240 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 251.5 bits (641), Expect = 8.7e-67
Identity = 147/314 (46.82%), Postives = 185/314 (58.92%), Query Frame = 0


Query: 9   NPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSP------LDS---------PTRAVME 68
           +P+ H   WD ++DPTA  ++   S  L + +  P      LDS               +
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  FDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRK 128
            DSS  +E       D+F+ D+FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRK
Sbjct: 71  SDSSSGDESS--PLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRK 130

Query: 129 FSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTL 188
           F YSGT CP  R G C++GD+CEF+HG FE WLHP RYRTQPC+DG +CRRR+CFFAHT 
Sbjct: 131 FHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTT 190

Query: 189 EQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMH 248
           EQLR+      + P      +   TSPTSIL+SP   P S   P++    S   L+  M 
Sbjct: 191 EQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPPSESPPLS---PSTGELIASMR 250

Query: 249 NLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR----TFEEEPAMERVESGRNL 297
            +QL+    S  +P  S     F SS R        W R      EE PAME VESG+ L
Sbjct: 251 KMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFVESGKEL 310

[Close]

BLAST of Csor.00g051240 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 242.7 bits (618), Expect = 4.1e-64
Identity = 148/342 (43.27%), Postives = 189/342 (55.26%), Query Frame = 0


Query: 1   MITESMLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWE 60
           MI E+    P+     W  L++ T   T+   S  + +   S L++         S+  +
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELT---TSEFFSPVMNSPDCSMLEALAGLQRYLPSNEPD 61

Query: 61  EQDLP------AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKF 120
            +  P      + +DA++CD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK+
Sbjct: 62  PESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKY 121

Query: 121 SYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLE 180
            YSGT CP  R G CKKGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +
Sbjct: 122 HYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPD 181

Query: 181 QLRIPAKQS--------LMSPRAAKEIAAAVTSPTSILISPDSPPMSP-----ISPVT-- 240
           QLR    +S        + SP  A+    ++ SP S      SPPMSP      SP+T  
Sbjct: 182 QLRFLHTRSPDRVDSFDVSSPIRARAFQLSI-SPVS-----GSPPMSPRADSESSPMTQS 241

Query: 241 ----TGGESFSRLVPLMHNLQLDKSKKNPAVS---------------GFDSSPR--RNSG 300
                G  S + +VP   NLQ +  K  P  +               GF S P      G
Sbjct: 242 LSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPG 301

[Close]

BLAST of Csor.00g051240 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-46
Identity = 103/226 (45.58%), Postives = 134/226 (59.29%), Query Frame = 0


Query: 38  AGHVSPLDSPTR-AVMEFDSSFWEEQDLPAAVDA-FTCDDFRMYEFKVRSCARGRSHDWT 97
           +G  SPL SP +    EF   +  +  LP   ++ +  D+FRMY FKVR C+R  SHDWT
Sbjct: 222 SGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWT 281

Query: 98  KCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQP 157
           +CP+ H GE ARRRDPRKF YS   CP  R G C++GD CE+AHG FE WLHP +YRT+ 
Sbjct: 282 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRL 341

Query: 158 CRDGIACRRRVCFFAHTLEQLR---IPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPP- 217
           C+DG  C RRVCFFAHT E+LR        ++ SPR+  + AAA++      + P SP  
Sbjct: 342 CKDGTGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAALS------LLPGSPSG 401

Query: 218 ---MSPISPVTTG-GESFSRL------VPLMH----NLQLDKSKKN 244
              MSP+SP   G G S S +      VP +H    NLQ  + + +
Sbjct: 402 VSVMSPLSPSAAGNGMSHSNMAWPQPNVPALHLPGSNLQSSRLRSS 441

The following BLAST results are available for this feature:

BLAST of Csor.00g051240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	2.0e-68	43.70	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	1.2e-65	46.82	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	5.7e-63	43.27	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	6.5e-59	43.89	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	1.2e-55	38.42	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Csor.00g051240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585728.1	1.38e-230	100.00	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]
XP_023537964.1	9.64e-221	96.49	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022951066.1	1.38e-219	96.49	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
XP_023002826.1	1.41e-215	95.53	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]
KAG7020635.1	2.12e-197	98.18	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]

BLAST of Csor.00g051240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGI4	6.66e-220	96.49	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KMD9	6.85e-216	95.53	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V5C0	2.75e-178	78.73	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BBA7	3.20e-177	78.41	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A6J1K790	8.75e-175	77.78	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Csor.00g051240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.4e-69	43.70	CCCH-type zinc finger family protein	[more]
AT2G25900.1	8.7e-67	46.82	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	8.7e-67	46.82	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	4.1e-64	43.27	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	1.3e-46	45.58	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 115..141 e-value: 0.099 score: 21.7 coord: 150..173 e-value: 9.0 score: 8.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 115..142 score: 11.47874
None	No IPR available	GENE3D	4.10.1000.10		coord: 111..184 e-value: 5.5E-7 score: 31.3
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 8..302
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 8..302

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g051240.m01	Csor.00g051240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061157	mRNA destabilization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003727	single-stranded RNA binding