Csor.00g050980 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g050980
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 3573741 .. 3574187 (-)
RNA-Seq ExpressionCsor.00g050980
SyntenyCsor.00g050980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTATGGAGTTCTTTGTTTGGACGTGGAAGAAGCTGAAGGATCAATACTGTGACGAAACTCGTCTCTTCGAGATCTTATCGATGCTAGGAAGAGGTATGATCCTTATCGATCTTTGCGACCAGGTTGAGAATTATAGCTTATCCTATCAACACCTGATACTCATTACTCCAGGAATAAAGCAGCTGACTCCTCAAGTTAACTTGGATTACATCATTCCAGGATTAAACAAAAAACAGCATTGTAAATTTGTAGCAGTGTTTCTTTATTGTCGAGTCATGGAGATCGACATAGTCCATTCACTTGTATTTGTTGCATGTTATTGTGGCATTATCCGCTGGAATGTAACGCAAACTTATATAGTTTATACTAAATCCATGACTCGTTTGGTCTTTTATGCATCTGCTACAATTTCATTCAATCCTGTTAAGTTGGCTGTTTGA

mRNA sequence

ATGAAGCTTATGGAGTTCTTTGTTTGGACGTGGAAGAAGCTGAAGGATCAATACTGTGACGAAACTCGTCTCTTCGAGATCTTATCGATGCTAGGAAGAGGAATAAAGCAGCTGACTCCTCAAGTTAACTTGGATTACATCATTCCAGGATTAAACAAAAAACAGCATTGTAAATTTGTAGCAGTGTTTCTTTATTGTCGAGTCATGGAGATCGACATAGTCCATTCACTTGTATTTGTTGCATGTTATTGTGGCATTATCCGCTGGAATGTAACGCAAACTTATATAGTTTATACTAAATCCATGACTCGTTTGGTCTTTTATGCATCTGCTACAATTTCATTCAATCCTGTTAAGTTGGCTGTTTGA

Coding sequence (CDS)

ATGAAGCTTATGGAGTTCTTTGTTTGGACGTGGAAGAAGCTGAAGGATCAATACTGTGACGAAACTCGTCTCTTCGAGATCTTATCGATGCTAGGAAGAGGAATAAAGCAGCTGACTCCTCAAGTTAACTTGGATTACATCATTCCAGGATTAAACAAAAAACAGCATTGTAAATTTGTAGCAGTGTTTCTTTATTGTCGAGTCATGGAGATCGACATAGTCCATTCACTTGTATTTGTTGCATGTTATTGTGGCATTATCCGCTGGAATGTAACGCAAACTTATATAGTTTATACTAAATCCATGACTCGTTTGGTCTTTTATGCATCTGCTACAATTTCATTCAATCCTGTTAAGTTGGCTGTTTGA

Protein sequence

MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRGIKQLTPQVNLDYIIPGLNKKQHCKFVAVFLYCRVMEIDIVHSLVFVACYCGIIRWNVTQTYIVYTKSMTRLVFYASATISFNPVKLAV
Homology
[Close]
BLAST of Csor.00g050980 vs. NCBI nr
Match: KAG6585754.1 (hypothetical protein SDJN03_18487, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247 bits (630), Expect = 1.78e-82
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRGIKQLTPQVNLDYIIPGLNKKQHCKFV 60
           MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRGIKQLTPQVNLDYIIPGLNKKQHCKFV
Sbjct: 1   MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRGIKQLTPQVNLDYIIPGLNKKQHCKFV 60

Query: 61  AVFLYCRVMEIDIVHSLVFVACYCGIIRWNVTQTYIVYTKSMTRLVFYASATISFNPVKL 120
           AVFLYCRVMEIDIVHSLVFVACYCGIIRWNVTQTYIVYTKSMTRLVFYASATISFNPVKL
Sbjct: 61  AVFLYCRVMEIDIVHSLVFVACYCGIIRWNVTQTYIVYTKSMTRLVFYASATISFNPVKL 120

Query: 121 AV 122
           AV
Sbjct: 121 AV 122

[Close]
BLAST of Csor.00g050980 vs. NCBI nr
Match: KAG7020665.1 (hypothetical protein SDJN02_17351, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (372), Expect = 2.93e-43
Identity = 77/103 (74.76%), Postives = 77/103 (74.76%), Query Frame = 0 

Query: 1   MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRG-------------------------- 60
           MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRG                          
Sbjct: 1   MKLMEFFVWTWKKLKDQYCDETRLFEILSMLGRGMILIDLCDQVENYSLSYQHLILITPG 60

Query: 61  IKQLTPQVNLDYIIPGLNKKQHCKFVAVFLYCRVMEIDIVHSL 77
           IKQLTPQVNLDYIIPGLNKKQHCKFVAVFLYCRVMEIDIVHSL
Sbjct: 61  IKQLTPQVNLDYIIPGLNKKQHCKFVAVFLYCRVMEIDIVHSL 103

The following BLAST results are available for this feature:
BLAST of Csor.00g050980 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g050980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585754.11.78e-82100.00hypothetical protein SDJN03_18487, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020665.12.93e-4374.76hypothetical protein SDJN02_17351, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g050980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g050980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g050980.m01Csor.00g050980.m01mRNA