Csor.00g049800 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCTCGGTCTGTTTACTCTTCATCAGTGCCTTCGCTGCCACCACCTTGTCCAAAGTCTCCACCGGAGTACCCGGATTTGTATGGAAAGCGTCGGGAAATAGCCAAGATTCATATGCTTGAAAGAGAAATTGGTATTCTTGAGGTTTGTTCGAATTTGAGTTGATTGTTACTATCTTCATATTCTGACACTTATAGTTCAATTGCAAGCATTTCTCTTTTTTGTCATTAGCTTTGCTAAGTAGGCACGGAATTTTTCAGTTCTACATGCAGATCTGTTTGCTTGATTTTAGGAGCTAGTTTCTCATTGCAGTTCTAAAACAGATTCGATAAGCCTAGAACTTCCATTTCATGGCATGAAATTTCTCCCAGACCTTCATGGAAAAGCACCACCTGGGAAGTCTCTGGGATAGGAAAATCCAAGAAAAAATTTCGGCTTCTAAATTTCTTGGGCTGCCTTTTCCCCAAAGCCAGGGGAATGAAAGACACAAGAATTCAATCTCTATCCCACTAAAATCCATGGAATTTGAAAATTAATGGACTCGTTGTCTCTCCTTTCTGTTTACCAGATAAAAGCATATTTCTTCCGCACTAATTATCTCCTCCTGTTATGGGATCGTTTAGCTGGACAAATGCCACATGTTACACGAAAAATTGAAATTAAATACAATGTTCACACATGTCATGAGGCACAATTCCCGATTTCAAATTAGCAATGATTGTTTTATTATTAGCTCAATGCGTCGTTACATTTTTCTAGTTTTCTTGAAACAGGACGAACTAAAATCTGTTGAAAGTCTCCAACCCGTCTCTATATGCTGCAAAGAGTATGGTTCTTCTTAATAAGTTTCATCATCTTGTAATTTATTGAAGTTCTGATGTCTTTCTTCCGTTAATTGAACCCATCCAATCGGGAGACTGATCCATCCAGTCTTTTGCAGGATTAGCGACTTTGTTACGGTCAACTCAGATCCATTGACGCCTACGTAAGACTTCCTTTTTAATTAAACTAACCTGCATAATTTTAAGGTTGCATCAGTTATGAACAATGGCCCTTTTTTTTTCAAGCAGATGTAGGACAAAACATAAGCGATGCCGCTTCTGGAAGTGGTTATGGTTAGAACTTTCAACATATGAAATCTGATTTTAGCTCATCACTGATTACGTTTTTTTGTATAACATTTGTTACGATTGTATGCAGCGGATTTCCTTGCTTTAATTTGTCATGGCTGTGCTGCTGCTCTTGCACTGGATGCTCTGTCTCCCTTGAGGTGCCTCGCTGCTGTGTTTGCAAACCATGCAACTTCCCATCATGTTCAAACTGCTGTAATAAGCCGAAGTGTAGTTTCTTCTCCTGTCCCTCTTCATTTTGCTGTAGAAACATCTCGTGCCGTGGACGGTGTTGCATTTTGTCATTACCTTCGATCTCATGCTCCGATGGCTGCTGCTGCTGCAAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCTTCTGTACAAAATCCTGTTGTGACCCTTGCTCTTTATGTTGTTGGTTTTGACCCCTGCTCGCTTCTGATATAA ATGGCTGCTCGGTCTGTTTACTCTTCATCAGTGCCTTCGCTGCCACCACCTTGTCCAAAGTCTCCACCGGAGTACCCGGATTTGTATGGAAAGCGTCGGGAAATAGCCAAGATTCATATGCTTGAAAGAGAAATTGATGTAGGACAAAACATAAGCGATGCCGCTTCTGGAAGTGGTTATGCGGATTTCCTTGCTTTAATTTGTCATGGCTGTGCTGCTGCTCTTGCACTGGATGCTCTGTCTCCCTTGAGGTGCCTCGCTGCTGTGTTTGCAAACCATGCAACTTCCCATCATGTTCAAACTGCTGTAATAAGCCGAAGTGTAGTTTCTTCTCCTGTCCCTCTTCATTTTGCTGTAGAAACATCTCGTGCCGTGGACGGTGTTGCATTTTGTCATTACCTTCGATCTCATGCTCCGATGGCTGCTGCTGCTGCAAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCTTCTGTACAAAATCCTGTTGTGACCCTTGCTCTTTATGTTGTTGGTTTTGACCCCTGCTCGCTTCTGATATAA ATGGCTGCTCGGTCTGTTTACTCTTCATCAGTGCCTTCGCTGCCACCACCTTGTCCAAAGTCTCCACCGGAGTACCCGGATTTGTATGGAAAGCGTCGGGAAATAGCCAAGATTCATATGCTTGAAAGAGAAATTGATGTAGGACAAAACATAAGCGATGCCGCTTCTGGAAGTGGTTATGCGGATTTCCTTGCTTTAATTTGTCATGGCTGTGCTGCTGCTCTTGCACTGGATGCTCTGTCTCCCTTGAGGTGCCTCGCTGCTGTGTTTGCAAACCATGCAACTTCCCATCATGTTCAAACTGCTGTAATAAGCCGAAGTGTAGTTTCTTCTCCTGTCCCTCTTCATTTTGCTGTAGAAACATCTCGTGCCGTGGACGGTGTTGCATTTTGTCATTACCTTCGATCTCATGCTCCGATGGCTGCTGCTGCTGCAAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCTTCTGTACAAAATCCTGTTGTGACCCTTGCTCTTTATGTTGTTGGTTTTGACCCCTGCTCGCTTCTGATATAA MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIDVGQNISDAASGSGYADFLALICHGCAAALALDALSPLRCLAAVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHYLRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI Homology
BLAST of Csor.00g049800 vs. ExPASy Swiss-Prot
Match: Q6AWT8 (Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=3702 GN=GG3 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.7e-09 Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0
BLAST of Csor.00g049800 vs. NCBI nr
Match: KAG6588088.1 (hypothetical protein SDJN03_16653, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 361 bits (926), Expect = 1.85e-125 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of Csor.00g049800 vs. NCBI nr
Match: KAG7021974.1 (Guanine nucleotide-binding protein subunit gamma 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 337 bits (863), Expect = 3.86e-115 Identity = 187/235 (79.57%), Postives = 187/235 (79.57%), Query Frame = 0
BLAST of Csor.00g049800 vs. NCBI nr
Match: KAE8653458.1 (hypothetical protein Csa_007447 [Cucumis sativus]) HSP 1 Score: 134 bits (336), Expect = 4.82e-36 Identity = 88/160 (55.00%), Postives = 98/160 (61.25%), Query Frame = 0
BLAST of Csor.00g049800 vs. NCBI nr
Match: KAG7023705.1 (Guanine nucleotide-binding protein subunit gamma 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 101 bits (251), Expect = 8.37e-23 Identity = 81/193 (41.97%), Postives = 100/193 (51.81%), Query Frame = 0
BLAST of Csor.00g049800 vs. NCBI nr
Match: KAF3439696.1 (hypothetical protein FNV43_RR17974 [Rhamnella rubrinervis]) HSP 1 Score: 96.3 bits (238), Expect = 1.08e-20 Identity = 86/211 (40.76%), Postives = 106/211 (50.24%), Query Frame = 0
BLAST of Csor.00g049800 vs. ExPASy TrEMBL
Match: A0A2N9H5R9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37669 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 1.17e-22 Identity = 86/196 (43.88%), Postives = 108/196 (55.10%), Query Frame = 0
BLAST of Csor.00g049800 vs. ExPASy TrEMBL
Match: A0A6J1HWR3 (guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita maxima OX=3661 GN=LOC111467550 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 5.34e-21 Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0
BLAST of Csor.00g049800 vs. ExPASy TrEMBL
Match: A0A6J1F450 (guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita moschata OX=3662 GN=LOC111440055 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 5.34e-21 Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0
BLAST of Csor.00g049800 vs. ExPASy TrEMBL
Match: A0A1R3HA97 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20735 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.14e-20 Identity = 58/119 (48.74%), Postives = 68/119 (57.14%), Query Frame = 0
BLAST of Csor.00g049800 vs. ExPASy TrEMBL
Match: A0A6A6KFP2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_038356 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.18e-17 Identity = 61/143 (42.66%), Postives = 70/143 (48.95%), Query Frame = 0
BLAST of Csor.00g049800 vs. TAIR 10
Match: AT5G20635.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10 Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|