Csor.00g048920 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g048920
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	pentatricopeptide repeat-containing protein At5g66520-like
Location	Csor_Chr11: 4296146 .. 4297059 (+)
RNA-Seq Expression	Csor.00g048920
Synteny	Csor.00g048920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronstop_codonterminal

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGATACGATTTCACCTCTAAGCTCTTCTTTTTGCTCGATTTCTGCAAATCAATCCACCAAATCAAACAAACCCATGCTCAACTGATCACTACTGGTCTTGTTCTACACCCAATTGCCACTAATAAACTCCTCAAACTTCTTTCCTTCTCAAGATTTGCTTCCATTTCTTATGCCCAAATGGTGTTCGATCATTTTCCCCAACCAGATCTCTTCCTCTATAACACCATCATCAAAGCCCACGCGCTTTCGGCCACTTCCTCTGCAGATTCCTTCACAAGGTTTCGTTCTCTGATCCGCGATGGAAGGTTAGTGCCCAATCAGTATTCTTTTGCATTTGCCTTCAAGGGGTGTGGCAATGCTGTTGGGGTTTTGGAAGGGGAGCAAGTTCGTGCTCATGCTGTTAAACTTGGTTTGGAGAATAATTTGTTTGTGATGAATGCGTTGATTGGGATGTATGTGAATTTGGGGGTTGTTGGGGATGCTAGAAAGGTGTTTGATTGGAGCACAATTAGAGATATGTACTCGTGGAATATCATGCTTAGTGGGTATGCGAAATTGGGGAAAATGGATGATGCTCGGGAACTGTTTGATGAAATGCCTGAAAGAGATGTTGTGTCGTGGACAACAATGATTGCTGGATGTGTCCAGGTAATTTGATAAGAACACAACTGCATTCAGTTTTTTTTTTTTAATCTTTTTAATTAAAAGGATAAGTTATAATTCTGTCTTTTCACTTCGGATTTCTGTCTTGACCAATTGAGATATGTTCATGTTGGAGTTTGTGGCTGTAAATTAGTCGTCAAACTAGATAAAATAGAACCACAGTATAGGAACTTGATGGTCACAATGTTTGGGATTTTAGCAAACCATTAACGTTCTATGATTTTAATTACTTCTTGGCACAGTAA

mRNA sequence

ATGATACGATACGATTTCACCTCTAAGCTCTTCTTTTTGCTCGATTTCTGCAAATCAATCCACCAAATCAAACAAACCCATGCTCAACTGATCACTACTGGTCTTGTTCTACACCCAATTGCCACTAATAAACTCCTCAAACTTCTTTCCTTCTCAAGATTTGCTTCCATTTCTTATGCCCAAATGGTGTTCGATCATTTTCCCCAACCAGATCTCTTCCTCTATAACACCATCATCAAAGCCCACGCGCTTTCGGCCACTTCCTCTGCAGATTCCTTCACAAGGTTTCGTTCTCTGATCCGCGATGGAAGGTTAGTGCCCAATCAGTATTCTTTTGCATTTGCCTTCAAGGGGTGTGGCAATGCTGTTGGGGTTTTGGAAGGGGAGCAAGTTCGTGCTCATGCTGTTAAACTTGGTTTGGAGAATAATTTGTTTGTGATGAATGCGTTGATTGGGATGTATGTGAATTTGGGGGTTGTTGGGGATGCTAGAAAGGTGTTTGATTGGAGCACAATTAGAGATATGTACTCGTGGAATATCATGCTTAGTGGGTATGCGAAATTGGGGAAAATGGATGATGCTCGGGAACTGTTTGATGAAATGCCTGAAAGAGATGTTGTGTCGTGGACAACAATGATTGCTGGATGTGTCCAGTAA

Coding sequence (CDS)

ATGATACGATACGATTTCACCTCTAAGCTCTTCTTTTTGCTCGATTTCTGCAAATCAATCCACCAAATCAAACAAACCCATGCTCAACTGATCACTACTGGTCTTGTTCTACACCCAATTGCCACTAATAAACTCCTCAAACTTCTTTCCTTCTCAAGATTTGCTTCCATTTCTTATGCCCAAATGGTGTTCGATCATTTTCCCCAACCAGATCTCTTCCTCTATAACACCATCATCAAAGCCCACGCGCTTTCGGCCACTTCCTCTGCAGATTCCTTCACAAGGTTTCGTTCTCTGATCCGCGATGGAAGGTTAGTGCCCAATCAGTATTCTTTTGCATTTGCCTTCAAGGGGTGTGGCAATGCTGTTGGGGTTTTGGAAGGGGAGCAAGTTCGTGCTCATGCTGTTAAACTTGGTTTGGAGAATAATTTGTTTGTGATGAATGCGTTGATTGGGATGTATGTGAATTTGGGGGTTGTTGGGGATGCTAGAAAGGTGTTTGATTGGAGCACAATTAGAGATATGTACTCGTGGAATATCATGCTTAGTGGGTATGCGAAATTGGGGAAAATGGATGATGCTCGGGAACTGTTTGATGAAATGCCTGAAAGAGATGTTGTGTCGTGGACAACAATGATTGCTGGATGTGTCCAGTAA

Protein sequence

MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ

Homology

[Close]

BLAST of Csor.00g048920 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-35
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 0


Query: 13  LLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFS-RFASISYAQMVFDHFPQPD 72
           LL  CK++  ++  HAQ+I  GL     A +KL++    S  F  + YA  VF    +P+
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPN 98

Query: 73  LFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQV 132
           L ++NT+ + HALS +    +   +  +I  G L+PN Y+F F  K C  +    EG+Q+
Sbjct: 99  LLIWNTMFRGHALS-SDPVSALKLYVCMISLG-LLPNSYTFPFVLKSCAKSKAFKEGQQI 158

Query: 133 RAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKM 192
             H +KLG + +L+V  +LI MYV  G + DA KVFD S  RD+ S+  ++ GYA  G +
Sbjct: 159 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 218

Query: 193 DDARELFDEMPERDVVSWTTMIAG 216
           ++A++LFDE+P +DVVSW  MI+G
Sbjct: 219 ENAQKLFDEIPVKDVVSWNAMISG 240

[Close]

BLAST of Csor.00g048920 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 3.6e-32
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 18  KSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFS-RFASISYAQMVFDHFPQPDLFLYN 77
           KS+ +I+Q HA ++ TGL     + +KL+   + +    ++SYA  + +    P+ F +N
Sbjct: 50  KSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHN 109

Query: 78  TIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVRAHAV 137
           ++I+A+A S+T    + T FR ++  G + P++YSF F  K C    G  EG Q+    +
Sbjct: 110 SVIRAYANSSTPEV-ALTVFREMLL-GPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 169

Query: 138 KLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKMDDARE 197
           K GL  ++FV N L+ +Y   G    ARKV D   +RD  SWN +LS Y + G +D+AR 
Sbjct: 170 KSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARA 229

Query: 198 LFDEMPERDVVSWTTMIAG 216
           LFDEM ER+V SW  MI+G
Sbjct: 230 LFDEMEERNVESWNFMISG 246

[Close]

BLAST of Csor.00g048920 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-32
Identity = 80/234 (34.19%), Postives = 122/234 (52.14%), Query Frame = 0


Query: 13  LLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHFPQPDL 72
           LL+ CK++  + Q H   I  G+      T KL+   + S   ++ YA+ +   FP+PD 
Sbjct: 11  LLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDA 70

Query: 73  FLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVR 132
           F++NT+++ ++  +    +S   F  ++R G + P+ +SFAF  K   N   +  G Q+ 
Sbjct: 71  FMFNTLVRGYS-ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMH 130

Query: 133 AHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFD---------WST------------ 192
             A+K GLE++LFV   LIGMY   G V  ARKVFD         W+             
Sbjct: 131 CQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVA 190

Query: 193 ----------IRDMYSWNIMLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAG 216
                     +R+  SWN+ML+GY K G+++ A+ +F EMP RD VSW+TMI G
Sbjct: 191 GAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243

[Close]

BLAST of Csor.00g048920 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-32
Identity = 74/207 (35.75%), Postives = 116/207 (56.04%), Query Frame = 0


Query: 8   SKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHF 67
           S+   L++ C S+ Q+KQTH  +I TG    P + +KL  + + S FAS+ YA+ VFD  
Sbjct: 31  SRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEI 90

Query: 68  PQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLE 127
           P+P+ F +NT+I+A+A S      S   F  ++ + +  PN+Y+F F  K       +  
Sbjct: 91  PKPNSFAWNTLIRAYA-SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 150

Query: 128 GEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAK 187
           G+ +   AVK  + +++FV N+LI  Y + G +  A KVF     +D+ SWN M++G+ +
Sbjct: 151 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 210

Query: 188 LGKMDDARELFDEMPERDV-VSWTTMI 214
            G  D A ELF +M   DV  S  TM+
Sbjct: 211 KGSPDKALELFKKMESEDVKASHVTMV 236

[Close]

BLAST of Csor.00g048920 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 76/206 (36.89%), Postives = 106/206 (51.46%), Query Frame = 0


Query: 14  LDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKL-LSFSRFASISYAQMVFDHFPQPDL 73
           L  C    ++KQ HA+++ TGL+    A  K L   +S +    + YAQ+VFD F +PD 
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80

Query: 74  FLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVR 133
           FL+N +I+  + S           R L        N Y+F    K C N     E  Q+ 
Sbjct: 81  FLWNLMIRGFSCSDEPERSLLLYQRMLCSSA--PHNAYTFPSLLKACSNLSAFEETTQIH 140

Query: 134 AHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKMD 193
           A   KLG EN+++ +N+LI  Y   G    A  +FD     D  SWN ++ GY K GKMD
Sbjct: 141 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 200

Query: 194 DARELFDEMPERDVVSWTTMIAGCVQ 219
            A  LF +M E++ +SWTTMI+G VQ
Sbjct: 201 IALTLFRKMAEKNAISWTTMISGYVQ 224

[Close]

BLAST of Csor.00g048920 vs. NCBI nr
Match: KAG6588176.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 437 bits (1125), Expect = 8.33e-155
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA
Sbjct: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
           QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG
Sbjct: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI
Sbjct: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ
Sbjct: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218

[Close]

BLAST of Csor.00g048920 vs. NCBI nr
Match: XP_022927711.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata] >XP_022927721.1 pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata])

HSP 1 Score: 437 bits (1125), Expect = 6.25e-149
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA
Sbjct: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
           QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG
Sbjct: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI
Sbjct: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ
Sbjct: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218

[Close]

BLAST of Csor.00g048920 vs. NCBI nr
Match: XP_023529533.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430 bits (1105), Expect = 6.62e-146
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA
Sbjct: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
           QMVFDHFPQPDLFLYNTIIKAHA+SATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG
Sbjct: 61  QMVFDHFPQPDLFLYNTIIKAHAISATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           NAVGVLEGEQVR HAVKLGLENNLFVMNALIGMYVNLG VG ARKVFDWSTIRDMYSWNI
Sbjct: 121 NAVGVLEGEQVRVHAVKLGLENNLFVMNALIGMYVNLGFVGYARKVFDWSTIRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ
Sbjct: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218

[Close]

BLAST of Csor.00g048920 vs. NCBI nr
Match: XP_022967088.1 (pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima])

HSP 1 Score: 429 bits (1104), Expect = 9.37e-146
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRF SISYA
Sbjct: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFGSISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
           QMVFDHFPQPDLFLYNTIIKAHA+SATSSADSFTRFRSLIRDG LVPNQYSFAFAFKGCG
Sbjct: 61  QMVFDHFPQPDLFLYNTIIKAHAISATSSADSFTRFRSLIRDGSLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           NAVGVLEGEQVR HAVKLGLENNLFVMNALIGMYVNLG VGDARKVFDWSTIRDMYSWNI
Sbjct: 121 NAVGVLEGEQVRVHAVKLGLENNLFVMNALIGMYVNLGFVGDARKVFDWSTIRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ
Sbjct: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218

[Close]

BLAST of Csor.00g048920 vs. NCBI nr
Match: XP_038878435.1 (pentatricopeptide repeat-containing protein At5g66520-like [Benincasa hispida])

HSP 1 Score: 383 bits (984), Expect = 1.24e-127
Identity = 191/218 (87.61%), Postives = 200/218 (91.74%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIR DFTSKLFFLLD CKSIHQIKQ HAQLITTGL++HPI TNKLLKL+S SRFA ISYA
Sbjct: 1   MIRCDFTSKLFFLLDSCKSIHQIKQVHAQLITTGLIVHPIPTNKLLKLISSSRFAPISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
            MVFDH PQPDLFLYNTIIKA ALS TSSADSFTRFRSLIR+ RLVPNQYSFAF FKGCG
Sbjct: 61  HMVFDHCPQPDLFLYNTIIKALALSTTSSADSFTRFRSLIREERLVPNQYSFAFVFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           N VGVLEGEQVR HAVKLGLENNLFVMNALIGMYVNLG V DARKVFDWS  RDMYSWNI
Sbjct: 121 NGVGVLEGEQVRVHAVKLGLENNLFVMNALIGMYVNLGFVVDARKVFDWSPNRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYA+LGKMD+AR+LFDEMPERDVVSWTTMI+GC+Q
Sbjct: 181 MLSGYARLGKMDEARQLFDEMPERDVVSWTTMISGCLQ 218

[Close]

BLAST of Csor.00g048920 vs. ExPASy TrEMBL
Match: A0A6J1EIF4 (pentatricopeptide repeat-containing protein At3g62890-like OS=Cucurbita moschata OX=3662 GN=LOC111434526 PE=3 SV=1)

HSP 1 Score: 437 bits (1125), Expect = 3.03e-149
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA
Sbjct: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
           QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG
Sbjct: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI
Sbjct: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ
Sbjct: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218

[Close]

BLAST of Csor.00g048920 vs. ExPASy TrEMBL
Match: A0A6J1HU41 (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita maxima OX=3661 GN=LOC111466592 PE=3 SV=1)

HSP 1 Score: 429 bits (1104), Expect = 4.54e-146
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRF SISYA
Sbjct: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFGSISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
           QMVFDHFPQPDLFLYNTIIKAHA+SATSSADSFTRFRSLIRDG LVPNQYSFAFAFKGCG
Sbjct: 61  QMVFDHFPQPDLFLYNTIIKAHAISATSSADSFTRFRSLIRDGSLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           NAVGVLEGEQVR HAVKLGLENNLFVMNALIGMYVNLG VGDARKVFDWSTIRDMYSWNI
Sbjct: 121 NAVGVLEGEQVRVHAVKLGLENNLFVMNALIGMYVNLGFVGDARKVFDWSTIRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ
Sbjct: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218

[Close]

BLAST of Csor.00g048920 vs. ExPASy TrEMBL
Match: A0A0A0LX83 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G612890 PE=3 SV=1)

HSP 1 Score: 342 bits (876), Expect = 8.99e-112
Identity = 174/218 (79.82%), Postives = 187/218 (85.78%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           M+R DF      LL  CKS  QIKQ HA+LITTGL+LHPI TNKLLK LS S FA ISYA
Sbjct: 1   MVRCDF------LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
            MVFDHFPQPDLFLYNTIIK  A S TSSADSFT+FRSLIR+ RLVPNQYSFAFAFKGCG
Sbjct: 61  HMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           + VGVLEGEQVR HA+KLGLENNLFV NALIGMYVNL  V DARKVFDWS  RDMYSWNI
Sbjct: 121 SGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYA+LGKMD+AR+LFDEMPE+DVVSWTTMI+GC+Q
Sbjct: 181 MLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQ 211

[Close]

BLAST of Csor.00g048920 vs. ExPASy TrEMBL
Match: A0A1S3BNM1 (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucumis melo OX=3656 GN=LOC103492046 PE=3 SV=1)

HSP 1 Score: 340 bits (871), Expect = 5.08e-111
Identity = 174/218 (79.82%), Postives = 186/218 (85.32%), Query Frame = 0


Query: 1   MIRYDFTSKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYA 60
           M+R DF      LL  CKS  QIKQ HAQLIT+GL+LHPI TNKLLK LS S FA ISYA
Sbjct: 1   MVRCDF------LLGSCKSFRQIKQVHAQLITSGLILHPIPTNKLLKQLS-SIFAPISYA 60

Query: 61  QMVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCG 120
            MVFDHFPQPDLFLYNTIIK  A S TSSADSFTRFRSLIR+ RLVPNQYSFAFAFK CG
Sbjct: 61  HMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTRFRSLIREERLVPNQYSFAFAFKACG 120

Query: 121 NAVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNI 180
           + VGVLEGEQVR HA+KLGLENNLFV NALIGMYVNL  V DARKVF+WS  RDMYSWNI
Sbjct: 121 SGVGVLEGEQVRVHALKLGLENNLFVTNALIGMYVNLDFVVDARKVFEWSPYRDMYSWNI 180

Query: 181 MLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           MLSGYA+LGKMD+AR+LFDEMPERDVVSWTTMI+GC+Q
Sbjct: 181 MLSGYARLGKMDEARQLFDEMPERDVVSWTTMISGCLQ 211

[Close]

BLAST of Csor.00g048920 vs. ExPASy TrEMBL
Match: A0A5A7UA76 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold773G00170 PE=3 SV=1)

HSP 1 Score: 278 bits (712), Expect = 8.62e-88
Identity = 134/157 (85.35%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 62  MVFDHFPQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGN 121
           MVFDHFPQPDLFLYNTIIK  A S TSSADSFTRFRSLIR+ RLVPNQYSFAFAFK CG+
Sbjct: 1   MVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTRFRSLIREERLVPNQYSFAFAFKACGS 60

Query: 122 AVGVLEGEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIM 181
            VGVLEGEQVR HA+KLGLENNLFV NALIGMYVNL  V DARKVF+WS  RDMYSWNIM
Sbjct: 61  GVGVLEGEQVRVHALKLGLENNLFVTNALIGMYVNLDFVVDARKVFEWSPYRDMYSWNIM 120

Query: 182 LSGYAKLGKMDDARELFDEMPERDVVSWTTMIAGCVQ 218
           LSGYA+LGKMD+AR+LFDEMPERDVVSWTTMI+GC+Q
Sbjct: 121 LSGYARLGKMDEARQLFDEMPERDVVSWTTMISGCLQ 157

[Close]

BLAST of Csor.00g048920 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-36
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 0


Query: 13  LLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFS-RFASISYAQMVFDHFPQPD 72
           LL  CK++  ++  HAQ+I  GL     A +KL++    S  F  + YA  VF    +P+
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPN 98

Query: 73  LFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQV 132
           L ++NT+ + HALS +    +   +  +I  G L+PN Y+F F  K C  +    EG+Q+
Sbjct: 99  LLIWNTMFRGHALS-SDPVSALKLYVCMISLG-LLPNSYTFPFVLKSCAKSKAFKEGQQI 158

Query: 133 RAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKM 192
             H +KLG + +L+V  +LI MYV  G + DA KVFD S  RD+ S+  ++ GYA  G +
Sbjct: 159 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 218

Query: 193 DDARELFDEMPERDVVSWTTMIAG 216
           ++A++LFDE+P +DVVSW  MI+G
Sbjct: 219 ENAQKLFDEIPVKDVVSWNAMISG 240

[Close]

BLAST of Csor.00g048920 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-33
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 18  KSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFS-RFASISYAQMVFDHFPQPDLFLYN 77
           KS+ +I+Q HA ++ TGL     + +KL+   + +    ++SYA  + +    P+ F +N
Sbjct: 50  KSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHN 109

Query: 78  TIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVRAHAV 137
           ++I+A+A S+T    + T FR ++  G + P++YSF F  K C    G  EG Q+    +
Sbjct: 110 SVIRAYANSSTPEV-ALTVFREMLL-GPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 169

Query: 138 KLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKMDDARE 197
           K GL  ++FV N L+ +Y   G    ARKV D   +RD  SWN +LS Y + G +D+AR 
Sbjct: 170 KSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARA 229

Query: 198 LFDEMPERDVVSWTTMIAG 216
           LFDEM ER+V SW  MI+G
Sbjct: 230 LFDEMEERNVESWNFMISG 246

[Close]

BLAST of Csor.00g048920 vs. TAIR 10
Match: AT1G74630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-33
Identity = 80/234 (34.19%), Postives = 122/234 (52.14%), Query Frame = 0


Query: 13  LLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHFPQPDL 72
           LL+ CK++  + Q H   I  G+      T KL+   + S   ++ YA+ +   FP+PD 
Sbjct: 11  LLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDA 70

Query: 73  FLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVR 132
           F++NT+++ ++  +    +S   F  ++R G + P+ +SFAF  K   N   +  G Q+ 
Sbjct: 71  FMFNTLVRGYS-ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMH 130

Query: 133 AHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFD---------WST------------ 192
             A+K GLE++LFV   LIGMY   G V  ARKVFD         W+             
Sbjct: 131 CQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVA 190

Query: 193 ----------IRDMYSWNIMLSGYAKLGKMDDARELFDEMPERDVVSWTTMIAG 216
                     +R+  SWN+ML+GY K G+++ A+ +F EMP RD VSW+TMI G
Sbjct: 191 GAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243

[Close]

BLAST of Csor.00g048920 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-33
Identity = 74/207 (35.75%), Postives = 116/207 (56.04%), Query Frame = 0


Query: 8   SKLFFLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHF 67
           S+   L++ C S+ Q+KQTH  +I TG    P + +KL  + + S FAS+ YA+ VFD  
Sbjct: 31  SRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEI 90

Query: 68  PQPDLFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLE 127
           P+P+ F +NT+I+A+A S      S   F  ++ + +  PN+Y+F F  K       +  
Sbjct: 91  PKPNSFAWNTLIRAYA-SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 150

Query: 128 GEQVRAHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAK 187
           G+ +   AVK  + +++FV N+LI  Y + G +  A KVF     +D+ SWN M++G+ +
Sbjct: 151 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 210

Query: 188 LGKMDDARELFDEMPERDV-VSWTTMI 214
            G  D A ELF +M   DV  S  TM+
Sbjct: 211 KGSPDKALELFKKMESEDVKASHVTMV 236

[Close]

BLAST of Csor.00g048920 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 76/206 (36.89%), Postives = 106/206 (51.46%), Query Frame = 0


Query: 14  LDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKL-LSFSRFASISYAQMVFDHFPQPDL 73
           L  C    ++KQ HA+++ TGL+    A  K L   +S +    + YAQ+VFD F +PD 
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80

Query: 74  FLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQVR 133
           FL+N +I+  + S           R L        N Y+F    K C N     E  Q+ 
Sbjct: 81  FLWNLMIRGFSCSDEPERSLLLYQRMLCSSA--PHNAYTFPSLLKACSNLSAFEETTQIH 140

Query: 134 AHAVKLGLENNLFVMNALIGMYVNLGVVGDARKVFDWSTIRDMYSWNIMLSGYAKLGKMD 193
           A   KLG EN+++ +N+LI  Y   G    A  +FD     D  SWN ++ GY K GKMD
Sbjct: 141 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 200

Query: 194 DARELFDEMPERDVVSWTTMIAGCVQ 219
            A  LF +M E++ +SWTTMI+G VQ
Sbjct: 201 IALTLFRKMAEKNAISWTTMISGYVQ 224

The following BLAST results are available for this feature:

BLAST of Csor.00g048920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	2.1e-35	39.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
O49399	3.6e-32	38.19	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX...	[more]
Q9CA54	6.2e-32	34.19	Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX...	[more]
O82380	6.2e-32	35.75	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9FJY7	1.7e-29	36.89	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]

BLAST of Csor.00g048920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588176.1	8.33e-155	100.00	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022927711.1	6.25e-149	100.00	pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata] ...	[more]
XP_023529533.1	6.62e-146	98.17	pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita pepo subsp...	[more]
XP_022967088.1	9.37e-146	97.71	pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima]	[more]
XP_038878435.1	1.24e-127	87.61	pentatricopeptide repeat-containing protein At5g66520-like [Benincasa hispida]	[more]

BLAST of Csor.00g048920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIF4	3.03e-149	100.00	pentatricopeptide repeat-containing protein At3g62890-like OS=Cucurbita moschata...	[more]
A0A6J1HU41	4.54e-146	97.71	pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita maxima O...	[more]
A0A0A0LX83	8.99e-112	79.82	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G6128...	[more]
A0A1S3BNM1	5.08e-111	79.82	pentatricopeptide repeat-containing protein At5g66520-like OS=Cucumis melo OX=36...	[more]
A0A5A7UA76	8.62e-88	85.35	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Csor.00g048920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	1.5e-36	39.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18840.1	2.6e-33	38.19	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G74630.1	4.4e-33	34.19	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	4.4e-33	35.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	1.2e-30	36.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 176..207 e-value: 3.9E-10 score: 37.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 176..205 e-value: 1.8E-10 score: 40.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 174..208 score: 13.241308
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 15..171 e-value: 1.8E-12 score: 49.3 coord: 172..218 e-value: 2.1E-11 score: 45.8
None	No IPR available	PANTHER	PTHR47928:SF65	TRANSCRIPT PROCESSING PROTEIN, PUTATIVE-RELATED	coord: 17..217
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 17..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g048920.m01	Csor.00g048920.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding