Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTTTTCTCAAACCTTGTTGGAGTTCAAAGGCAAGAGGAGGAGGACAAAGGCATGCTTTAGACAACGAAGAATTCATCAAAAAAGGCAACAATCTATTGAATTGGAAGATCCCAAAAGTTCCCACATCGAAAATCTACAAAACAAATCCATTCAATTTCTTGTCTGATCCATCCATCAAAACCAAACAAGTGGAAATGGCTTGTGGCAATGGCACCCAAGCCACCAGCTTAATCCTTGAATCCCCCTTCATAGCTAGCCTCCGAAGCAAAAGATTCTACAGCATGTTCAACGTGGGGATGATCCAAATTGGAGCCAAAACTTTGACAAAAAAAATACCCTTAAACGCTACGATTACTCTATGCGTTTTCGACACTCGAACCGAAAAGTTCGAAGACTCGATTTTGGGAATGGTGGAAGCGAGATTATGTAATGGGCCATTGTATTTCAATGTTTTTCCCAACATTACAATGTCTTCGATTGATCCTAAGATGTTTGAGGCCTTGTGTTTGCTTGTCATTGTTAAGGGCTTTGAGCATCTTCCTGCAGGGACAAAGCCAATTCGTTTGACGTGGAGAACTTGTTACAAGCTGCAAAACAGTGCTTTGGCTGAGGCTTTGATTGAGAGCCGACATGGCAGAACTGTGTTTTTTCAGACAGATTTTGAGAACTCCGATGTTGCTGTTCCGAAGGTTTCAATATGGGATGATGTTCTTTGCAAAGTTTTGGATTTATTTCAGTCTGAGAAATAA
mRNA sequence
ATGGCTACTTTTCTCAAACCTTGTTGGAGTTCAAAGGCAAGAGGAGGAGGACAAAGGCATGCTTTAGACAACGAAGAATTCATCAAAAAAGGCAACAATCTATTGAATTGGAAGATCCCAAAAGTTCCCACATCGAAAATCTACAAAACAAATCCATTCAATTTCTTGTCTGATCCATCCATCAAAACCAAACAAGTGGAAATGGCTTGTGGCAATGGCACCCAAGCCACCAGCTTAATCCTTGAATCCCCCTTCATAGCTAGCCTCCGAAGCAAAAGATTCTACAGCATGTTCAACGTGGGGATGATCCAAATTGGAGCCAAAACTTTGACAAAAAAAATACCCTTAAACGCTACGATTACTCTATGCGTTTTCGACACTCGAACCGAAAAGTTCGAAGACTCGATTTTGGGAATGGTGGAAGCGAGATTATGGACAAAGCCAATTCGTTTGACGTGGAGAACTTGTTACAAGCTGCAAAACAGTGCTTTGGCTGAGGCTTTGATTGAGAGCCGACATGGCAGAACTGTGTTTTTTCAGACAGATTTTGAGAACTCCGATGTTGCTGTTCCGAAGGTTTCAATATGGGATGATGTTCTTTGCAAAGTTTTGGATTTATTTCAGTCTGAGAAATAA
Coding sequence (CDS)
ATGGCTACTTTTCTCAAACCTTGTTGGAGTTCAAAGGCAAGAGGAGGAGGACAAAGGCATGCTTTAGACAACGAAGAATTCATCAAAAAAGGCAACAATCTATTGAATTGGAAGATCCCAAAAGTTCCCACATCGAAAATCTACAAAACAAATCCATTCAATTTCTTGTCTGATCCATCCATCAAAACCAAACAAGTGGAAATGGCTTGTGGCAATGGCACCCAAGCCACCAGCTTAATCCTTGAATCCCCCTTCATAGCTAGCCTCCGAAGCAAAAGATTCTACAGCATGTTCAACGTGGGGATGATCCAAATTGGAGCCAAAACTTTGACAAAAAAAATACCCTTAAACGCTACGATTACTCTATGCGTTTTCGACACTCGAACCGAAAAGTTCGAAGACTCGATTTTGGGAATGGTGGAAGCGAGATTATGGACAAAGCCAATTCGTTTGACGTGGAGAACTTGTTACAAGCTGCAAAACAGTGCTTTGGCTGAGGCTTTGATTGAGAGCCGACATGGCAGAACTGTGTTTTTTCAGACAGATTTTGAGAACTCCGATGTTGCTGTTCCGAAGGTTTCAATATGGGATGATGTTCTTTGCAAAGTTTTGGATTTATTTCAGTCTGAGAAATAA
Protein sequence
MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPSIKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATITLCVFDTRTEKFEDSILGMVEARLWTKPIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDLFQSEK
Homology
BLAST of Csor.00g048740 vs. NCBI nr
Match:
KAG6588194.1 (hypothetical protein SDJN03_16759, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 433 bits (1113), Expect = 3.28e-153
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPS 60
MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPS
Sbjct: 1 MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPS 60
Query: 61 IKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATI 120
IKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATI
Sbjct: 61 IKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATI 120
Query: 121 TLCVFDTRTEKFEDSILGMVEARLWTKPIRLTWRTCYKLQNSALAEALIESRHGRTVFFQ 180
TLCVFDTRTEKFEDSILGMVEARLWTKPIRLTWRTCYKLQNSALAEALIESRHGRTVFFQ
Sbjct: 121 TLCVFDTRTEKFEDSILGMVEARLWTKPIRLTWRTCYKLQNSALAEALIESRHGRTVFFQ 180
Query: 181 TDFENSDVAVPKVSIWDDVLCKVLDLFQSEK 211
TDFENSDVAVPKVSIWDDVLCKVLDLFQSEK
Sbjct: 181 TDFENSDVAVPKVSIWDDVLCKVLDLFQSEK 211
BLAST of Csor.00g048740 vs. NCBI nr
Match:
XP_038880673.1 (uncharacterized protein LOC120072292 [Benincasa hispida])
HSP 1 Score: 268 bits (686), Expect = 4.21e-88
Identity = 132/216 (61.11%), Postives = 160/216 (74.07%), Query Frame = 0
Query: 1 MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPS 60
MAT KPC SS GG HALD+EE+IKKGNNLL WKIPKVPT+KIYK NPF F SDPS
Sbjct: 1 MATLFKPCCSSNFGGGS--HALDSEEYIKKGNNLLKWKIPKVPTTKIYKRNPFTFFSDPS 60
Query: 61 IKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATI 120
IKT++ +M+C NG+QA LI ++P +AS RFY+ NVGMIQIG K +T KIP NA+I
Sbjct: 61 IKTEEEKMSCENGSQAFRLIAKNPIMASFNDNRFYTTINVGMIQIGVKIMTTKIPSNASI 120
Query: 121 TLCVFDTRTEKFEDSILGMVEARLW-------TKPIRLTWRTCYKLQNSALAEALIESRH 180
LCVFD+R E FED+ILG+VE+ L T+PI L WRTCYKLQ SAL AL+ES
Sbjct: 121 ILCVFDSRNENFEDAILGLVESNLGFEQLPEGTRPISLMWRTCYKLQESALPNALLESPQ 180
Query: 181 GRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDLFQS 209
G+TV+FQTD +NS VAV KVS WD+V+CK+ ++
Sbjct: 181 GKTVYFQTDLQNSKVAVQKVSKWDEVVCKLRNIIMK 214
BLAST of Csor.00g048740 vs. NCBI nr
Match:
KGN66494.1 (hypothetical protein Csa_006902 [Cucumis sativus])
HSP 1 Score: 245 bits (626), Expect = 1.49e-78
Identity = 131/243 (53.91%), Postives = 155/243 (63.79%), Query Frame = 0
Query: 1 MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPS 60
M+TF CWSS GG H+LD+EE+IKKG NLL WKIPK+PT+KIYK+NPF F SDP
Sbjct: 1 MSTF---CWSSNFGGGS--HSLDSEEYIKKGKNLLKWKIPKIPTTKIYKSNPFIFFSDPF 60
Query: 61 IKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATI 120
IKTK+ M C NG+Q LI +P + + + KRFY+ N+GMIQIG KTLT KIP NA+I
Sbjct: 61 IKTKEETMPCENGSQVFRLISGNPMVDNFQEKRFYTRLNMGMIQIGVKTLTTKIPSNASI 120
Query: 121 TLCVFDTRTEKFEDSILGMVEARL------------------------------------ 180
LCVFDTR + FEDSILG+VE++L
Sbjct: 121 ILCVFDTRNDNFEDSILGLVESKLIDGPIFFNIFPNITMPIFHPKLLESFVLIAMVQGFE 180
Query: 181 ----WTKPIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVL 203
T PI L WRTCYKLQ SAL ALIES G+TVFFQT+FENS VA KVS WD+V+
Sbjct: 181 QLPQGTSPISLMWRTCYKLQASALPTALIESPQGKTVFFQTNFENSKVADQKVSQWDEVI 238
BLAST of Csor.00g048740 vs. NCBI nr
Match:
TYK18873.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 170 bits (430), Expect = 9.28e-50
Identity = 93/179 (51.96%), Postives = 108/179 (60.34%), Query Frame = 0
Query: 68 MACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATITLCVFDT 127
M C NG+QA LI ++P +AS + KRF +M N+GMIQIG KTLT KIP NA+I LCVFDT
Sbjct: 1 MPCENGSQAFRLIYDNPILASFQEKRFCTMLNMGMIQIGVKTLTTKIPSNASIILCVFDT 60
Query: 128 RTEKFEDSILGMVEARL----------------------------------------WTK 187
R + FEDSILG+VEA+L T
Sbjct: 61 RNDNFEDSILGLVEAKLSDGPMFFNIFPNITMSLFHPKLCESLVLIAMVQGFEQLPQGTS 120
Query: 188 PIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDL 206
PI L WRTCYKLQ SA ALIES G+TVFFQTDFENS VAV KVS WD+V+CK D+
Sbjct: 121 PISLMWRTCYKLQGSAFPTALIESPQGKTVFFQTDFENSKVAVQKVSEWDEVVCKEEDV 179
BLAST of Csor.00g048740 vs. NCBI nr
Match:
KAA0051217.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 167 bits (422), Expect = 1.51e-48
Identity = 92/179 (51.40%), Postives = 107/179 (59.78%), Query Frame = 0
Query: 68 MACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATITLCVFDT 127
M C NG+QA LI ++P +AS + KRF +M N+GMIQIG KTLT KI NA+I LCVFDT
Sbjct: 1 MPCENGSQAFRLIYDNPILASFQEKRFCTMLNMGMIQIGVKTLTTKISSNASIILCVFDT 60
Query: 128 RTEKFEDSILGMVEARL----------------------------------------WTK 187
R + FEDSILG+VEA+L T
Sbjct: 61 RNDNFEDSILGLVEAKLSDGPMFFNIFPNITMSLFHPKLCESLVLIAMVQGFEQLPQGTS 120
Query: 188 PIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDL 206
PI L WRTCYKLQ SA ALIES G+TVFFQTDFENS VAV KVS WD+V+CK D+
Sbjct: 121 PISLMWRTCYKLQGSAFPTALIESPQGKTVFFQTDFENSKVAVQKVSEWDEVVCKEEDV 179
BLAST of Csor.00g048740 vs. ExPASy TrEMBL
Match:
A0A0A0LZS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614640 PE=4 SV=1)
HSP 1 Score: 245 bits (626), Expect = 7.21e-79
Identity = 131/243 (53.91%), Postives = 155/243 (63.79%), Query Frame = 0
Query: 1 MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPS 60
M+TF CWSS GG H+LD+EE+IKKG NLL WKIPK+PT+KIYK+NPF F SDP
Sbjct: 1 MSTF---CWSSNFGGGS--HSLDSEEYIKKGKNLLKWKIPKIPTTKIYKSNPFIFFSDPF 60
Query: 61 IKTKQVEMACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATI 120
IKTK+ M C NG+Q LI +P + + + KRFY+ N+GMIQIG KTLT KIP NA+I
Sbjct: 61 IKTKEETMPCENGSQVFRLISGNPMVDNFQEKRFYTRLNMGMIQIGVKTLTTKIPSNASI 120
Query: 121 TLCVFDTRTEKFEDSILGMVEARL------------------------------------ 180
LCVFDTR + FEDSILG+VE++L
Sbjct: 121 ILCVFDTRNDNFEDSILGLVESKLIDGPIFFNIFPNITMPIFHPKLLESFVLIAMVQGFE 180
Query: 181 ----WTKPIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVL 203
T PI L WRTCYKLQ SAL ALIES G+TVFFQT+FENS VA KVS WD+V+
Sbjct: 181 QLPQGTSPISLMWRTCYKLQASALPTALIESPQGKTVFFQTNFENSKVADQKVSQWDEVI 238
BLAST of Csor.00g048740 vs. ExPASy TrEMBL
Match:
A0A5D3D5V1 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00750 PE=4 SV=1)
HSP 1 Score: 170 bits (430), Expect = 4.49e-50
Identity = 93/179 (51.96%), Postives = 108/179 (60.34%), Query Frame = 0
Query: 68 MACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATITLCVFDT 127
M C NG+QA LI ++P +AS + KRF +M N+GMIQIG KTLT KIP NA+I LCVFDT
Sbjct: 1 MPCENGSQAFRLIYDNPILASFQEKRFCTMLNMGMIQIGVKTLTTKIPSNASIILCVFDT 60
Query: 128 RTEKFEDSILGMVEARL----------------------------------------WTK 187
R + FEDSILG+VEA+L T
Sbjct: 61 RNDNFEDSILGLVEAKLSDGPMFFNIFPNITMSLFHPKLCESLVLIAMVQGFEQLPQGTS 120
Query: 188 PIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDL 206
PI L WRTCYKLQ SA ALIES G+TVFFQTDFENS VAV KVS WD+V+CK D+
Sbjct: 121 PISLMWRTCYKLQGSAFPTALIESPQGKTVFFQTDFENSKVAVQKVSEWDEVVCKEEDV 179
BLAST of Csor.00g048740 vs. ExPASy TrEMBL
Match:
A0A5A7U9X3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00180 PE=4 SV=1)
HSP 1 Score: 167 bits (422), Expect = 7.29e-49
Identity = 92/179 (51.40%), Postives = 107/179 (59.78%), Query Frame = 0
Query: 68 MACGNGTQATSLILESPFIASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATITLCVFDT 127
M C NG+QA LI ++P +AS + KRF +M N+GMIQIG KTLT KI NA+I LCVFDT
Sbjct: 1 MPCENGSQAFRLIYDNPILASFQEKRFCTMLNMGMIQIGVKTLTTKISSNASIILCVFDT 60
Query: 128 RTEKFEDSILGMVEARL----------------------------------------WTK 187
R + FEDSILG+VEA+L T
Sbjct: 61 RNDNFEDSILGLVEAKLSDGPMFFNIFPNITMSLFHPKLCESLVLIAMVQGFEQLPQGTS 120
Query: 188 PIRLTWRTCYKLQNSALAEALIESRHGRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDL 206
PI L WRTCYKLQ SA ALIES G+TVFFQTDFENS VAV KVS WD+V+CK D+
Sbjct: 121 PISLMWRTCYKLQGSAFPTALIESPQGKTVFFQTDFENSKVAVQKVSEWDEVVCKEEDV 179
BLAST of Csor.00g048740 vs. ExPASy TrEMBL
Match:
A0A0A0LXM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1)
HSP 1 Score: 143 bits (361), Expect = 1.71e-38
Identity = 94/249 (37.75%), Postives = 135/249 (54.22%), Query Frame = 0
Query: 1 MATFLKPCWSSKARGGGQRHALDNEEFIKKGNNLLNWKIPKVPTSKIY----KTNPFNFL 60
M+ F K C S G H+L+ EE+++KG +L+ WK+P+VP KIY K + F F
Sbjct: 1 MSLFFKSCSSKNFVGD---HSLEEEEYVEKGKSLVKWKMPRVPIHKIYEERRKNHFFIFP 60
Query: 61 S--DPSIKTKQVEMACGNGTQATSLILESPFIASLRSK-RFYSMFNVGMIQIGAKTLTKK 120
S DPSI+T + +++ GN + L ++P R + F++ N+G++QIG KTLTKK
Sbjct: 61 SKNDPSIRTTEGQISFGNEGGSFKLYGQTPSSYCRRRRISFFNTMNIGLVQIGVKTLTKK 120
Query: 121 IPLNATITLCVFDTRTEKFEDSILGMVEARLW---------------------------- 180
IP NA+I LC+ D R EK EDS+L +VE++L
Sbjct: 121 IPPNASIILCLRDNRIEKLEDSLLALVESKLGDGPFYFNVFPNINLSLFFSSITNVLSVH 180
Query: 181 ------------TKPIRLTWRTCYKL-QNSALAEALIESRHGRTVFFQTDF--ENSDVAV 199
+ PI +T RTCYKL QN +EALIES G+TVFFQ + ++ D V
Sbjct: 181 VLVKGLDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVV 240
BLAST of Csor.00g048740 vs. ExPASy TrEMBL
Match:
A0A2G9GSM0 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_19419 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 2.03e-18
Identity = 68/229 (29.69%), Postives = 103/229 (44.98%), Query Frame = 0
Query: 27 FIKKGNNLLNWKIPKVPTSKIYKTNPFNFLSDPSIKTKQVEMACGNGTQATSLILESPFI 86
F NL NWK+P+ TS+IY++ FNF SD IK ++ + +L I
Sbjct: 29 FENLNQNLQNWKLPETSTSQIYESKVFNFTSDYIIKMERFKELS---------MLSKKLI 88
Query: 87 ASLRSKRFYSMFNVGMIQIGAKTLTKKIPLNATITLCVFDTRTEKFEDSILGMVEARLWT 146
+ K Y ++GMIQIG K LT+ + LN + + + D R +FEDS+LG+VE+ L
Sbjct: 89 KQHKQK--YKHLHLGMIQIGLKPLTR-LGLNTSALILIRDRRHNQFEDSLLGIVESTLCD 148
Query: 147 KPI---------------------------------------RLTWRTCYKLQNSALAEA 206
P+ L +R CYK+ N+ +
Sbjct: 149 GPVYFKCFPNFTVSLADPNILQSLILNIKTEGFDMLKGTLNVALVYRLCYKVINTVVPRT 208
Query: 207 LIES-----RHGRTVFFQTDFENSDVAVPKVSIWDDVLCKVLDLFQSEK 211
I S + G T F TD E S++ VPK W+ V K+L+++ E+
Sbjct: 209 KISSTNVYDKRGETTLFITDLEKSNILVPKTIAWNQV--KLLEVWTLEQ 243
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6588194.1 | 3.28e-153 | 100.00 | hypothetical protein SDJN03_16759, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_038880673.1 | 4.21e-88 | 61.11 | uncharacterized protein LOC120072292 [Benincasa hispida] | [more] |
KGN66494.1 | 1.49e-78 | 53.91 | hypothetical protein Csa_006902 [Cucumis sativus] | [more] |
TYK18873.1 | 9.28e-50 | 51.96 | polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0051217.1 | 1.51e-48 | 51.40 | polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LZS0 | 7.21e-79 | 53.91 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614640 PE=4 SV=1 | [more] |
A0A5D3D5V1 | 4.49e-50 | 51.96 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00750 PE... | [more] |
A0A5A7U9X3 | 7.29e-49 | 51.40 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00180 P... | [more] |
A0A0A0LXM3 | 1.71e-38 | 37.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1 | [more] |
A0A2G9GSM0 | 2.03e-18 | 29.69 | Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_19419 P... | [more] |
Match Name | E-value | Identity | Description | |