Csor.00g048320 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g048320
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL30A
Location	Csor_Chr11: 4709194 .. 4711941 (+)
RNA-Seq Expression	Csor.00g048320
Synteny	Csor.00g048320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTTAAGCTTTAGGAGTTGTATTGGTACTGTTTCGACTCTGATATGAAACGTCTCAACGTTGAATTTTCATTAACAATGTCGTGCTTAATATTCTGAATCGTGCTTGATGCTTGAATGTTAATAGCATCTCGACATTACCCACTAGCATCTCAACACTATAAACACTTCCTCATCCATTTGAAGCATCTCAACCTTGATATTAGCTTCTCGATGCTGCTTCACCCAACACATGTTTTTTTAATATGAAAAACAATCTCGATACTACGATGAGGCGTTTGTGAGGCTACCGGTATTTTCAAAAAAAATAAAAAATAAAAAATGATGATGCTATCTCTATCAAGTTTTCATGCTCTCCTCTTGTCATGTCTCTCTCGTGCTCACCTCCATCTTCGATCTACACTTGGTTCAAGCCACCAACACATCTCAGTCTCTCAATCTCCTCACGACAATGTCACGAATAAGAAACCTTTACTCACTTTGAAATAAAATGAACACGACTCTCCACAATGATACGATATTGTCCAATTTGAGCGTAAGTTCTAATAACTTTGCTTTGGGCTTACCAAAAATATTCCTTGATTATAAACCCACAATCATTCCCTAAATTAGCAGATGTGGGACTTTGGTCATCCGGACCTACCAGAATTTTTGAACCCATAATTTTATTTAATTATAAATAAATATCTTTAACCGATTCTATTTTATTTTTAATAGAAGCTTAAAATTGATATTTAAATTTATTTATTTTTAAATAAAAGTGATAAATCTATAATATAACAGCGCGGCCCGTTCTTTTCAATATATTTATTTATTTATTGTATATATATATTTTTTAATCTTCAGCTGAAAACTATGCCCTAAACTTACAAATCTGAAGGGCCGCCGTCTGTTTCTCGTAGGAGACTTCAATTTCATCTTCGTGCCCTAATTTGTTCTTCAGCTGCGCTCGATTTGCTCCATCTTCAAGGTTTCCCTCACTTTTTCTCTCAACCATTCACATTCACATTCACGCAACACTTCCAAATCTTGGCCAGTGCATTTAGATAAACACTGAGCATCTTGCATCGATCTGTTCCCGCTTCACTATTTTGAGGTGATTTCCCCCAATTTCTGGCTTTTAATTTCGTATATCATATGGGATTCCATCAAGTTAAGGTTTATTGTTACGTTGTAGTCGCGTACTTCGTTTACTGGATTAATTTAGTTGTGTTGAGAACTTGTCATGACATGTTGAAATAATCTTTAATGGTTAACTCTTGTTCACTTTCTCAGGTACAGCGAGATTCTTGGACAGCCGGCCCCTGTCATTGGTTACTGTACAAATGAGGGGTAGGAGTTACACTCCATCGCCGCCGAGGGGTTATGGCAGGAGGGGCAGGAGCCCTAGCCCTAGGGGACGCTATGGTGGTGGACGTGGGAGAGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGTTTGTTCTTGATGAGTTTGTTTGTTTTTTTGCCCTCAAAAGTCCTATAGAAAGTCTTGAGAAGGAATGGAGGTCGTTTTATTTTGTTTTGCTTTGATAGGAGATAGATCTTAGTATCAAGAAAAAAAAATGGTGGAGAGGAAGGGGTAACAACGAGCCACTTTGTCCAGATAACGGAGTTGAAGAGGCTTTTCCCTGGAGTATTAGAACATTAGAATATTGATGAGAATTCGTATTTAGACAGCTTCGGAAAGAAGCAAAATGCCCTGGACCAGAGAACCTTGTTTAATCTCTTTCTTTGTCTTCTAAGAGCCTTCCATTTCTTCCTAGCTTACGTAGGGCGCATTCAATCTCCATCCACATGTGGTTAAGGGTGCCCCTAGGTTCGCTCACAATGTGTTTGGGTATTCACCAACCCTCAATTAGGCTTGCTGTGATGTGGCTCCGGATTTGTTTAACTTTAATTTTTATATCTCAACGAATCTTGTGGAAATCTACCATTTTTTTTTCAGCTGTAATTGTTATTCAAAATACTATTTATTTTTTGTGTCAATGTTTCTGTTTTGCATTAAGCAAAATAAGTTTTTCTTAACAGCCTTGGAGGGTTGTTTGGCCCCAAGCATGCGTGACACTTTAAAAACGTTGTTGCCACCTTACCACATTATGTTTGTGTGTTTGACCACTTTAAATTGTATTATTTCTTTAAGAAGACTAAAGCTAGTTATAGAAATATAGTAGATTTCCTTTCATTTTCTTCTCTCTCACTGCGCCCTTAGTGGAATCAGAAACTCTCCTGCATGGCCATAGTTTTATCCAAACTATTGACTCTTTTCAAGCTCACTTGGGTGCTAGGATGCAGTCTTGTAGTCAGTGGATGGGGGGTCTTTTATTCTGTAAGATATTTCAGTTTCACTCTTTCTTCCACTTATCATCTCTCTGTGGGACTTATATTCATGTAATTTTATGTGGTGGCATGTCCTTGTTCTGATTATCTAGCTTCTTTATATATCTTCACGTGATTTGTAATTAGGAATAGATTGCTGTATCACTATTCTGGAACTTTGTACTGCATATTATTTTTTTTAGAGAAATGCTTTTGCTCCATGCTGTTATTCTTCCTAGCTTACTGATCAAATTCTTAGTAAGAACATGATGAAATCTTGTATGCCACTCATTTATTTCTTTTAATGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACGTATACCTACCAAAGGACTATTATACTGGGTGA

mRNA sequence

ATGCGCTTAAGCTTTAGGAGTTGTATTGCATCTCGACATTACCCACTAGCATCTCAACACTATAAACACTTCCTCATCCATTTGAAGCATCTCAACCTTGATATTAGCTTCTCGATGCTGCTTCACCCAACACATATAAACACTGAGCATCTTGCATCGATCTGTTCCCGCTTCACTATTTTGAGGTACAGCGAGATTCTTGGACAGCCGGCCCCTGTCATTGGTTACTGTACAAATGAGGGGGGACGCTATGGTGGTGGACGTGGGAGAGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACGTATACCTACCAAAGGACTATTATACTGGGTGA

Coding sequence (CDS)

ATGCGCTTAAGCTTTAGGAGTTGTATTGCATCTCGACATTACCCACTAGCATCTCAACACTATAAACACTTCCTCATCCATTTGAAGCATCTCAACCTTGATATTAGCTTCTCGATGCTGCTTCACCCAACACATATAAACACTGAGCATCTTGCATCGATCTGTTCCCGCTTCACTATTTTGAGGTACAGCGAGATTCTTGGACAGCCGGCCCCTGTCATTGGTTACTGTACAAATGAGGGGGGACGCTATGGTGGTGGACGTGGGAGAGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACGTATACCTACCAAAGGACTATTATACTGGGTGA

Protein sequence

MRLSFRSCIASRHYPLASQHYKHFLIHLKHLNLDISFSMLLHPTHINTEHLASICSRFTILRYSEILGQPAPVIGYCTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDYYTG

Homology

[Close]

BLAST of Csor.00g048320 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-19
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GR+GG R  DLPTSLLVRNLRHDCR EDLRR F QFG +KD+Y
Sbjct: 8   PSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIY 67

Query: 130 LPKDYYTG 133
           LP+DYYTG
Sbjct: 68  LPRDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.1e-19
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QFG +KD+Y
Sbjct: 8   PSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIY 67

Query: 130 LPKDYYTG 133
           LP+DYYTG
Sbjct: 68  LPRDYYTG 74

[Close]

BLAST of Csor.00g048320 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.6e-12
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 70  PAPVIGYCTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDY 129
           P P  GY    GG  GGGR      SLLVRN+  DCRPE+LR  F +FG ++DVY+P+DY
Sbjct: 26  PPPRRGY---GGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDY 85

Query: 130 YTG 133
           Y+G
Sbjct: 86  YSG 85

[Close]

BLAST of Csor.00g048320 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 93  PTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDYYTG 133
           P+ LL+RNL  D RP DLR  F +FG +KD+YLP++YYTG
Sbjct: 46  PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTG 85

[Close]

BLAST of Csor.00g048320 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 94  TSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDYYT 132
           TSL VRN+  D R EDLRR+FG++G I DVY+P D+YT
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYT 47

[Close]

BLAST of Csor.00g048320 vs. NCBI nr
Match: KAG6588236.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277 bits (709), Expect = 3.33e-94
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRLSFRSCIASRHYPLASQHYKHFLIHLKHLNLDISFSMLLHPTHINTEHLASICSRFTI 60
           MRLSFRSCIASRHYPLASQHYKHFLIHLKHLNLDISFSMLLHPTHINTEHLASICSRFTI
Sbjct: 1   MRLSFRSCIASRHYPLASQHYKHFLIHLKHLNLDISFSMLLHPTHINTEHLASICSRFTI 60

Query: 61  LRYSEILGQPAPVIGYCTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAI 120
           LRYSEILGQPAPVIGYCTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAI
Sbjct: 61  LRYSEILGQPAPVIGYCTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAI 120

Query: 121 KDVYLPKDYYTG 132
           KDVYLPKDYYTG
Sbjct: 121 KDVYLPKDYYTG 132

[Close]

BLAST of Csor.00g048320 vs. NCBI nr
Match: KAG7022150.1 (Serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (287), Expect = 6.61e-30
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 67

Query: 130 LPKDYYTG 132
           LPKDYYTG
Sbjct: 68  LPKDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. NCBI nr
Match: XP_023531530.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo] >XP_023531531.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (287), Expect = 2.78e-28
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 67

Query: 130 LPKDYYTG 132
           LPKDYYTG
Sbjct: 68  LPKDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. NCBI nr
Match: XP_023006139.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima] >XP_023006146.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima] >XP_023006155.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima])

HSP 1 Score: 115 bits (287), Expect = 2.78e-28
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 67

Query: 130 LPKDYYTG 132
           LPKDYYTG
Sbjct: 68  LPKDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. NCBI nr
Match: XP_022927245.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata] >XP_022927254.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata] >XP_022927262.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata])

HSP 1 Score: 115 bits (287), Expect = 3.02e-28
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 67

Query: 130 LPKDYYTG 132
           LPKDYYTG
Sbjct: 68  LPKDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. ExPASy TrEMBL
Match: A0A6J1KZE4 (serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita maxima OX=3661 GN=LOC111498968 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 1.34e-28
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 67

Query: 130 LPKDYYTG 132
           LPKDYYTG
Sbjct: 68  LPKDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. ExPASy TrEMBL
Match: A0A6J1EGN8 (serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita moschata OX=3662 GN=LOC111434147 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 1.46e-28
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 67

Query: 130 LPKDYYTG 132
           LPKDYYTG
Sbjct: 68  LPKDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 1.16e-25
Identity = 53/69 (76.81%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGG-GRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDV 129
           P+P  GY       +  GRYGG GR RDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKD+
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDI 67

Query: 130 YLPKDYYTG 132
           YLPKDYYTG
Sbjct: 68  YLPKDYYTG 76

[Close]

BLAST of Csor.00g048320 vs. ExPASy TrEMBL
Match: A0A6J1DH06 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 1.25e-25
Identity = 53/69 (76.81%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGG-GRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDV 129
           P+P  GY       +  GRYGG GR RDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKD+
Sbjct: 8   PSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDI 67

Query: 130 YLPKDYYTG 132
           YLPKDYYTG
Sbjct: 68  YLPKDYYTG 76

[Close]

BLAST of Csor.00g048320 vs. ExPASy TrEMBL
Match: A0A2H5PZN5 (RRM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_180030 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.47e-25
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 82  GRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDYYTG 132
           GRYGGGRGRDLPTSLLVRNLRHDCRPED+RR F QFGAIKD+YLP+DYY+G
Sbjct: 30  GRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSG 80

[Close]

BLAST of Csor.00g048320 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-20
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GR+GG R  DLPTSLLVRNLRHDCR EDLRR F QFG +KD+Y
Sbjct: 8   PSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIY 67

Query: 130 LPKDYYTG 133
           LP+DYYTG
Sbjct: 68  LPRDYYTG 75

[Close]

BLAST of Csor.00g048320 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-20
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QFG +KD+Y
Sbjct: 8   PSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIY 67

Query: 130 LPKDYYTG 133
           LP+DYYTG
Sbjct: 68  LPRDYYTG 74

[Close]

BLAST of Csor.00g048320 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-20
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QFG +KD+Y
Sbjct: 8   PSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIY 67

Query: 130 LPKDYYTG 133
           LP+DYYTG
Sbjct: 68  LPRDYYTG 74

[Close]

BLAST of Csor.00g048320 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-20
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 70  PAPVIGY-----CTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVY 129
           P+P  GY       +  GRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QFG +KD+Y
Sbjct: 8   PSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIY 67

Query: 130 LPKDYYTG 133
           LP+DYYTG
Sbjct: 68  LPRDYYTG 74

[Close]

BLAST of Csor.00g048320 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 71.2 bits (173), Expect = 6.8e-13
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 70  PAPVIGYCTNEGGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDY 129
           P P  GY    GG  GGGR      SLLVRN+  DCRPE+LR  F +FG ++DVY+P+DY
Sbjct: 26  PPPRRGY---GGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDY 85

Query: 130 YTG 133
           Y+G
Sbjct: 86  YSG 85

The following BLAST results are available for this feature:

BLAST of Csor.00g048320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHP2	3.6e-19	64.71	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q9SEU4	8.1e-19	66.18	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	9.6e-12	53.97	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	1.7e-08	60.00	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	1.4e-07	63.16	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of Csor.00g048320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588236.1	3.33e-94	100.00	Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro...	[more]
KAG7022150.1	6.61e-30	80.88	Serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita argyrosperma su...	[more]
XP_023531530.1	2.78e-28	80.88	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pep...	[more]
XP_023006139.1	2.78e-28	80.88	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima] >XP_023...	[more]
XP_022927245.1	3.02e-28	80.88	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata] >XP_0...	[more]

BLAST of Csor.00g048320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZE4	1.34e-28	80.88	serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita maxima OX=366...	[more]
A0A6J1EGN8	1.46e-28	80.88	serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita moschata OX=3...	[more]
A0A6J1DIJ4	1.16e-25	76.81	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica ch...	[more]
A0A6J1DH06	1.25e-25	76.81	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica ch...	[more]
A0A2H5PZN5	1.47e-25	88.24	RRM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_180030 PE=4 SV=1	[more]

BLAST of Csor.00g048320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13570.1	2.6e-20	64.71	SC35-like splicing factor 30A	[more]
AT1G55310.1	5.8e-20	66.18	SC35-like splicing factor 33	[more]
AT1G55310.2	5.8e-20	66.18	SC35-like splicing factor 33	[more]
AT1G55310.3	5.8e-20	66.18	SC35-like splicing factor 33	[more]
AT3G55460.1	6.8e-13	53.97	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..132 e-value: 3.1E-8 score: 35.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 96..131 e-value: 2.0E-6 score: 27.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 94..132 score: 8.637593
None	No IPR available	PANTHER	PTHR23147:SF193	BNAA06G00410D PROTEIN	coord: 76..126
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 76..126
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 88..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g048320.m01	Csor.00g048320.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding