Csor.00g048150 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g048150
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 16899953 .. 16900767 (+)
RNA-Seq ExpressionCsor.00g048150
SyntenyCsor.00g048150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAACCCGACCACTCGTCTCCTTTGCCCGATACGTAGAACGAACCCTCAGTCTTCCCCTTCGTTCTCCGACGGTATTCTGATGTCGTACACGCACGATTTTGTGTCGGTTCGTCCACTTCTCGTTTGTATAATAGCACCACGGTACTCCTATGCTCCTAAATCCCCGAAATTTGCACTGAAACTTGAGATCCTCGTGATACAACCTCTGGAAATGTAGCGTAGTGAATCCTTTTAAAGAAGAAACAAAAATGTTCCTCTCGGGCTTGGAATCTTAAGAAATGTAGCCTAGTGAATCCTTTTAAAGAAGAAACATTTTGTAGTTTGTCGAGACCTGTACAGTGACAAAAACTTACTAATAAGTTTAGTATAATTTATTGATTAAGATTATACAAAATGGACCATCACCTTATATTATTTCAACCTAAGGTCCAATAATTGCAACAAGTTTAGTCACAACTATGTTAATTTGAAATGCTATCTTTTCCTCCCCTCAAGAAGGCTCCATTTTGCCACTTTCTTGGATGAAAAAATGTTTGTCCAATGTCGAAGGTATAGGCCGAAATTTGGGAATCACACACAACAGTGTGCGCAAGCTCCTAGTGCTATGATGCTTGGGTGTCTACACAACATTGTAAACTTCCTTGGTGCCACAGTTCCAAGAACTTCGTGCGAATGAGTGGCTCCTTCGTCTCAGCATCATGTTCGGTACATCTTCCTTCGATGTGCAGCGCCTACACTTCTCTGCTCGACTTCTCTTTGCTTTTACTTAGCCTTCGACCTCGGTTTGCACCGGTCGTGGTTGAGCTCTGA

mRNA sequence

ATGTTCAACCCGACCACTCGTCTCCTTTGCCCGATACGTAGAACGAACCCTCAGTCTTCCCCTTCGTTCTCCGACGGTATTCTGATGTCGTACACGCACGATTTTGTGTCGGTTCGTCCACTTCTCGTTTGTATAATAGCACCACGGTACTCCTATGCTCCTAAATCCCCGAAATTTGCACTGAAACTTGAGATCCTCGTGATACAACCTCTGGAAATTTCCAAGAACTTCGTGCGAATGAGTGGCTCCTTCGTCTCAGCATCATGTTCGGTACATCTTCCTTCGATGTGCAGCGCCTACACTTCTCTGCTCGACTTCTCTTTGCTTTTACTTAGCCTTCGACCTCGGTTTGCACCGGTCGTGGTTGAGCTCTGA

Coding sequence (CDS)

ATGTTCAACCCGACCACTCGTCTCCTTTGCCCGATACGTAGAACGAACCCTCAGTCTTCCCCTTCGTTCTCCGACGGTATTCTGATGTCGTACACGCACGATTTTGTGTCGGTTCGTCCACTTCTCGTTTGTATAATAGCACCACGGTACTCCTATGCTCCTAAATCCCCGAAATTTGCACTGAAACTTGAGATCCTCGTGATACAACCTCTGGAAATTTCCAAGAACTTCGTGCGAATGAGTGGCTCCTTCGTCTCAGCATCATGTTCGGTACATCTTCCTTCGATGTGCAGCGCCTACACTTCTCTGCTCGACTTCTCTTTGCTTTTACTTAGCCTTCGACCTCGGTTTGCACCGGTCGTGGTTGAGCTCTGA

Protein sequence

MFNPTTRLLCPIRRTNPQSSPSFSDGILMSYTHDFVSVRPLLVCIIAPRYSYAPKSPKFALKLEILVIQPLEISKNFVRMSGSFVSASCSVHLPSMCSAYTSLLDFSLLLLSLRPRFAPVVVEL
Homology
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BLAST of Csor.00g048150 vs. NCBI nr
Match: KAG6571424.1 (hypothetical protein SDJN03_30339, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (628), Expect = 4.16e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MFNPTTRLLCPIRRTNPQSSPSFSDGILMSYTHDFVSVRPLLVCIIAPRYSYAPKSPKFA 60
           MFNPTTRLLCPIRRTNPQSSPSFSDGILMSYTHDFVSVRPLLVCIIAPRYSYAPKSPKFA
Sbjct: 1   MFNPTTRLLCPIRRTNPQSSPSFSDGILMSYTHDFVSVRPLLVCIIAPRYSYAPKSPKFA 60

Query: 61  LKLEILVIQPLEISKNFVRMSGSFVSASCSVHLPSMCSAYTSLLDFSLLLLSLRPRFAPV 120
           LKLEILVIQPLEISKNFVRMSGSFVSASCSVHLPSMCSAYTSLLDFSLLLLSLRPRFAPV
Sbjct: 61  LKLEILVIQPLEISKNFVRMSGSFVSASCSVHLPSMCSAYTSLLDFSLLLLSLRPRFAPV 120

Query: 121 VVEL 124
           VVEL
Sbjct: 121 VVEL 124

The following BLAST results are available for this feature:
BLAST of Csor.00g048150 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g048150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571424.14.16e-82100.00hypothetical protein SDJN03_30339, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g048150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g048150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g048150.m01Csor.00g048150.m01mRNA