Csor.00g047800 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g047800
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 16538074 .. 16540831 (-)
RNA-Seq ExpressionCsor.00g047800
SyntenyCsor.00g047800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCAAAGAAACCCTAGAAAATGAAGGAGGGGATCTCGGCGAGGAAGACGGTGAAAGAAAACGAAGGGAAACTAATGAAAATGAAGCGAATGGTCAACATTCATATATGAACAGCAATCATTTCGTTGCTCTTCCAATCACGCGCCGTTGAATTTTCGATCTGTTTATCTTTTTGGATGCGGCTTCGTGGGAAGATCGAGACTTGAAATTTCCAACGACTTCCTTCTCAAGTCGTCACTTTTTCATGATCATGAACTAAGATTTAAGGATTAAACACTAAATCGCTATTTAATCAAATATATACTCTGAATTTAACCAAATATATTGGTTCAGTTTCATTAGATTAGATCTTAATAAATGTTGCAAATTTTAATCTTTTCAAGAGAAGAATCATGAAAAAGACATGTTTAATGAGTTTAAGAAATTTTAAGTATAAGATTCTAGATTCCTATTCTAACCTAAGTCTAGTTGTGATGTCAATATATTACTCCACTATAGGGGTGGTAAAAATGTAAATACATGCAAGTCATGCTATGACTTAGGGATCTATCGTTAAAACATCCTAGGGGTTGAACGACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGATTTTCCTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCATCTGTTAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGGATATCACAATCCACCCCCCTTCAAGGCCCAACGTCCTCGCTGTCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCCAAAAAATCCACCCCCTTTGGGGCCCAGCGTCCTTACTAACACACCGTCTTGTGTCTACCCCCCTTCGGAGAACAACGAAAAGGCTGACACATTGTCCAGTGTCTGGCTCTGATACCATTTGTAACGACCTAGATCCACCGCTAGCAAATATTGTCCTCTCAAGGCTTTAAAACGCGTCTGCTAGGGGAAAGTTTCCACACGCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAAGGGTGGTCTCTAGTCTAAACTAAATTGGATGTGCAGTACTTCCCTACAGACGACCCACATGTACGAGCGTGAATCTCCAGGCGGTCGCACCCACCTAGACCCATCATAGTCGAGCTAGTTGTCTGTAACAACATTTGGAGGTCAACAAACCCTTGAGTGTCATGCGCGACATGATCACCATCATCATCGTAGCGTACGCGTCCATAATCATCATTGTAAAAAGGGAAGTATCCAGAGGTAACACATAAATGCATGAGGTCCCCATGATTTCTCGTCTTTAAAACATTTTTATGACACAACCCTAATTTCATCCTTATATTACTATAAGTAATATATGTGCATTAATCTTCATATTATCATCGTCATAACATTAACTAGGGTTGTATCCTAGGAAGATCATTCTCGTGATGCATTATGACATTCAATCATATTTTTCATCTTAACATGAAAATAACGCCATATTAAGGAAATAACATCATCTTACGTCATCATGTTAACATGTATTGCCATCATCATTTGTCGTCATAAACACATCATAATCATTGTAAAACATCATAAGACGTCATCATATAACTCATACACGTCATCCTACATCATATATCATAAATCATCATCAAGGCATCATAAACATAAAGCATAAAAGACACGTATATGTTTGACCTTAGTAAATCGTCATACATTAAACAATGTTTAGCTTATCCTATAGTAAAGTCACTTACTTGTTTGACCTTAGTCGGCCATTTCCCTTAATTCGAGTTTGCTAAGCTTTCGTTCCTTTGAACTGCTCCAAATGTCGCTGGGGTCGTTTCCTATTAGGTCGTTCATTGCCTTTCGTTAGTATTTCACAATTCTAATATAAATTCAACTTGAATTTGTGAAATAGAGCATTGTACCGACGTTAATTACCTTAATTAGGGTTAAAATCATGTTTGAGAGGGTTGAAATAGTTGAAAAAGATGTTTTTGTCCTTTACCGAGTCGAGGAGTCGATTTCTGAGTCGTGAAGTCGAGTCGTTTAAGCCGCTGAAAGTCAAGGGAGTGTCTGGTTGTAGGCGTGCCACGTGTCATTGTGGGAGAGGGATGCATCGCAATTTCCTTCTCGAGTCGAGGCGTGCGTTCGGGTTGGTAATTTGGGCAAATGGGTGCTGGGTTGCTGCAGGCGTGGTCGACGCAGTTAGTGGGCCTCGGGCTAAGTTGCTGCAGGTGGACCGATGTAGGGTCTACGATGCTGCAGTGGGTTGGATCGAGCTAACGGGTCGGTGCAGGTTAGATCTGAATCCGACCGATCCTTTCTTCTTCGCCTGATTTTTGCTATATTCCAACACCTTTTCTCTCTCCTTTATTTTCGTCTCTCGTCCTTTTTCCTCCTCTACCTCTCTGTTGGCCTCTCTTCTTCACTCCCACAAGGTTTCGCAACGTGTTGACACCTACAACAACCAGATCCGTGATGCTCCAAAAACCCGCAACTTGGATTTGAATTCCGATGAAGCACAACATCGTTAAAGTGTATAAGGCTTACCTCTCATGTATGTGCAATTGTCGTCGCTTCTTTTCGCACAGTGGATGGGTCATTTCGACATCAGGTTTGTGAGATCGACCTTGCCAGAAAACTTCTGACCTCCTTTCTCTCTTGCAGGTACTCTAGGAGCGTGGTTGAGAGTCGTGAGGGTGCTTGGCTTTCCGTGGGGGTTGCGGGGTCGTGA

mRNA sequence

ATGAAATCCAAAGAAACCCTAGAAAATGAAGGAGGGGATCTCGGCGAGGAAGACGGTGAAAGAAAACGAAGGGAAACTAATGAAAATGAAGCGAATGGCGTGGTCGACGCAGTTAGTGGGCCTCGGGCTAAGTTGCTGCAGGTGGACCGATGTAGGGTCTACGATGCTGCAGTGGGTTGGATCGAGCTAACGGGTCGGTGCAGGTACTCTAGGAGCGTGGTTGAGAGTCGTGAGGGTGCTTGGCTTTCCGTGGGGGTTGCGGGGTCGTGA

Coding sequence (CDS)

ATGAAATCCAAAGAAACCCTAGAAAATGAAGGAGGGGATCTCGGCGAGGAAGACGGTGAAAGAAAACGAAGGGAAACTAATGAAAATGAAGCGAATGGCGTGGTCGACGCAGTTAGTGGGCCTCGGGCTAAGTTGCTGCAGGTGGACCGATGTAGGGTCTACGATGCTGCAGTGGGTTGGATCGAGCTAACGGGTCGGTGCAGGTACTCTAGGAGCGTGGTTGAGAGTCGTGAGGGTGCTTGGCTTTCCGTGGGGGTTGCGGGGTCGTGA

Protein sequence

MKSKETLENEGGDLGEEDGERKRRETNENEANGVVDAVSGPRAKLLQVDRCRVYDAAVGWIELTGRCRYSRSVVESREGAWLSVGVAGS
Homology
[Close]
BLAST of Csor.00g047800 vs. NCBI nr
Match: KAG6571389.1 (hypothetical protein SDJN03_30304, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (435), Expect = 8.90e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MKSKETLENEGGDLGEEDGERKRRETNENEANGVVDAVSGPRAKLLQVDRCRVYDAAVGW 60
          MKSKETLENEGGDLGEEDGERKRRETNENEANGVVDAVSGPRAKLLQVDRCRVYDAAVGW
Sbjct: 1  MKSKETLENEGGDLGEEDGERKRRETNENEANGVVDAVSGPRAKLLQVDRCRVYDAAVGW 60

Query: 61 IELTGRCRYSRSVVESREGAWLSVGVAGS 89
          IELTGRCRYSRSVVESREGAWLSVGVAGS
Sbjct: 61 IELTGRCRYSRSVVESREGAWLSVGVAGS 89

The following BLAST results are available for this feature:
BLAST of Csor.00g047800 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g047800 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571389.18.90e-54100.00hypothetical protein SDJN03_30304, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g047800 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g047800 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g047800.m01Csor.00g047800.m01mRNA