Csor.00g047070 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g047070
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr15: 4412618 .. 4412968 (-)
RNA-Seq ExpressionCsor.00g047070
SyntenyCsor.00g047070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTATCAGACCAATTTGCAGTGACCAAACTCTCCACTTTCACACCTCCAACAGTAATCTTACAATCAATTTTGTTTCTGTCTTGGAACAGTCTCACAATCCTTGTGTTATTTGCAGGCAGTGCAGCGGGGAATGTGATCTTCCATGATCTTCCCTCCTCTACCATTGATGCCTTTGTTATCTCAATTTTCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGATTGTATCACTCATTCGTTCTCGGCAAAGCTCGCTAG

mRNA sequence

ATGAGATTATCAGACCAATTTGCAGTGACCAAACTCTCCACTTTCACACCTCCAACAGTAATCTTACAATCAATTTTGTTTCTGTCTTGGAACAGTCTCACAATCCTTGTGTTATTTGCAGGCAGTGCAGCGGGGAATGTGATCTTCCATGATCTTCCCTCCTCTACCATTGATGCCTTTGTTATCTCAATTTTCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGATTGTATCACTCATTCGTTCTCGGCAAAGCTCGCTAG

Coding sequence (CDS)

ATGAGATTATCAGACCAATTTGCAGTGACCAAACTCTCCACTTTCACACCTCCAACAGTAATCTTACAATCAATTTTGTTTCTGTCTTGGAACAGTCTCACAATCCTTGTGTTATTTGCAGGCAGTGCAGCGGGGAATGTGATCTTCCATGATCTTCCCTCCTCTACCATTGATGCCTTTGTTATCTCAATTTTCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGATTGTATCACTCATTCGTTCTCGGCAAAGCTCGCTAG

Protein sequence

MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR
Homology
BLAST of Csor.00g047070 vs. NCBI nr
Match: KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (553), Expect = 6.35e-71
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAF 60
           MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAF
Sbjct: 1   MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAF 60

Query: 61  VISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR 116
           VISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR
Sbjct: 61  VISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR 116

BLAST of Csor.00g047070 vs. NCBI nr
Match: KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])

HSP 1 Score: 166 bits (420), Expect = 1.93e-50
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 0

Query: 1   MRLSDQFAVTKLST-FTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDA 60
           M+LS+Q A+ KL T FT PT+IL+SILFLS NSLTIL+LFAGSA G VIFH  PSS IDA
Sbjct: 12  MKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFPSSAIDA 71

Query: 61  FVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR 116
           F+ISI FAFSGALSALLVPQRH LA FCALYSLAS+ASALLLLIWGLYH+ +LGKA+
Sbjct: 72  FIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGKAQ 128

BLAST of Csor.00g047070 vs. NCBI nr
Match: KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.07e-32
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 0

Query: 41  GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALL 100
           GSA G V+FH L SS IDAFVISI FAFSGALSALLVPQRHNLA FCA+YSL SMASALL
Sbjct: 4   GSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALL 63

Query: 101 LLIWGLYHSFVLGKAR 116
           LLIWGLYH+ +LGKA 
Sbjct: 64  LLIWGLYHTLILGKAH 79

BLAST of Csor.00g047070 vs. NCBI nr
Match: KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 3.85e-27
Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 0

Query: 1   MRLSDQFAVTKLSTFTPP-TVILQSILFLSWNSLTILVLFAGSAAGN---VIFHDL--PS 60
           M  SDQ A      F PP T++L+ IL+LS N+L+IL++ +G + G    +IF  L  PS
Sbjct: 4   MMKSDQNA------FVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSNPS 63

Query: 61  STIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGK 114
           S  DAFV+SI FAF GAL ALL+P + NLATF  LYS+ASMASALLLLIWGLY+SFV G+
Sbjct: 64  SAFDAFVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYSFVHGR 117

BLAST of Csor.00g047070 vs. NCBI nr
Match: KGN49807.1 (hypothetical protein Csa_004664 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 2.41e-13
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 19  TVILQSILFLSWNSLTILVLFAGSAA---GNVIFHDL--PSSTIDAFVISIFFAFSGALS 78
           T +L SILF+S+N+LTIL+  +  +      VIF+ L  PS   DAFV+SI F+FS AL 
Sbjct: 16  TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75

Query: 79  ALLVPQRHNLATFCALYSLASMASALLLLIWGLYH 108
           ALL+P +  LA + A YS+A MA AL LLI GLY+
Sbjct: 76  ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

BLAST of Csor.00g047070 vs. ExPASy TrEMBL
Match: A0A0A0KLQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 9.35e-51
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 0

Query: 1   MRLSDQFAVTKLST-FTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDA 60
           M+LS+Q A+ KL T FT PT+IL+SILFLS NSLTIL+LFAGSA G VIFH  PSS IDA
Sbjct: 12  MKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFPSSAIDA 71

Query: 61  FVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR 116
           F+ISI FAFSGALSALLVPQRH LA FCALYSLAS+ASALLLLIWGLYH+ +LGKA+
Sbjct: 72  FIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGKAQ 128

BLAST of Csor.00g047070 vs. ExPASy TrEMBL
Match: A0A5A7U2V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00460 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 5.16e-33
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 0

Query: 41  GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALL 100
           GSA G V+FH L SS IDAFVISI FAFSGALSALLVPQRHNLA FCA+YSL SMASALL
Sbjct: 4   GSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALL 63

Query: 101 LLIWGLYHSFVLGKAR 116
           LLIWGLYH+ +LGKA 
Sbjct: 64  LLIWGLYHTLILGKAH 79

BLAST of Csor.00g047070 vs. ExPASy TrEMBL
Match: A0A0A0KN11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.16e-13
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 19  TVILQSILFLSWNSLTILVLFAGSAA---GNVIFHDL--PSSTIDAFVISIFFAFSGALS 78
           T +L SILF+S+N+LTIL+  +  +      VIF+ L  PS   DAFV+SI F+FS AL 
Sbjct: 16  TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75

Query: 79  ALLVPQRHNLATFCALYSLASMASALLLLIWGLYH 108
           ALL+P +  LA + A YS+A MA AL LLI GLY+
Sbjct: 76  ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

BLAST of Csor.00g047070 vs. ExPASy TrEMBL
Match: A0A061E956 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.03e-12
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 12  LSTFTPPTVILQSILFLSWNSLTILVLFA-----GSAAGNVIFHDLPSSTIDAFVISIFF 71
           LS+    T IL+SILF+S+   TIL+L       GS    ++F   P+ T  AF I I F
Sbjct: 26  LSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA-TFHAFTICIIF 85

Query: 72  AFSGALSALLVPQRHNLATFCALYSLASMASALLLLIW 104
           AFSGA  AL+ P    +A+ C  YS+ASMASA+ LLIW
Sbjct: 86  AFSGAFCALMTPNSPRIASLCGCYSIASMASAIGLLIW 122

BLAST of Csor.00g047070 vs. ExPASy TrEMBL
Match: A0A5B7B2W8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.77e-10
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 20  VILQSILFLSWNSLTILVLFA-----GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSA 79
           +IL+SILF S+ +  IL+        G+    +IF  LPS+   AF+I I FAFSGA   
Sbjct: 40  IILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSA-FHAFLICIIFAFSGAYCG 99

Query: 80  LL-VPQRHNLATFCALYSLASMASALLLLIW 104
           L+ +P +  LATFC   S+ASMASA+ LLIW
Sbjct: 100 LMMIPHKPRLATFCGYCSMASMASAVALLIW 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6579131.16.35e-71100.00hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49809.11.93e-5077.78hypothetical protein Csa_004648 [Cucumis sativus][more]
KAA0050243.11.07e-3281.58hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816... [more]
KAG6601931.13.85e-2757.50hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49807.12.41e-1351.58hypothetical protein Csa_004664 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KLQ99.35e-5177.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1[more]
A0A5A7U2V85.16e-3381.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KN111.16e-1351.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1[more]
A0A061E9562.03e-1246.94Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1[more]
A0A5B7B2W84.77e-1047.25Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g047070.m01Csor.00g047070.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane